Wall clock time and date at job start Mon Mar 30 2020 03:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00079 * 2 1 4 4 H 1.48495 * 109.47012 * 269.99892 * 3 2 1 5 5 H 1.48494 * 109.47094 * 30.00131 * 3 2 1 6 6 H 1.48503 * 109.46849 * 150.00136 * 3 2 1 7 7 C 1.37878 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99905 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00145 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46929 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.75555 * 303.28355 * 10 9 7 12 12 C 1.54915 * 110.69415 * 180.10976 * 10 9 7 13 13 O 1.44788 * 101.72171 * 206.04113 * 12 10 9 14 14 C 1.43750 * 104.81511 * 36.10619 * 13 12 10 15 15 H 1.08991 * 109.51107 * 95.49133 * 14 13 12 16 16 C 1.53000 * 109.62891 * 215.81029 * 14 13 12 17 17 C 1.52997 * 109.47060 * 294.36141 * 16 14 13 18 18 H 1.09009 * 110.37049 * 307.35288 * 17 16 14 19 19 C 1.54376 * 110.41253 * 185.00165 * 17 16 14 20 20 C 1.54263 * 105.05936 * 217.36567 * 19 17 16 21 21 C 1.54376 * 105.06409 * 0.02562 * 20 19 17 22 22 N 1.48560 * 104.59204 * 23.84944 * 21 20 19 23 23 O 1.43365 * 108.78965 * 335.68250 * 14 13 12 24 24 H 0.97005 * 119.99782 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47181 * 59.99996 * 9 7 2 26 26 H 1.09001 * 109.46732 * 300.00237 * 9 7 2 27 27 H 1.09001 * 110.97977 * 324.15425 * 12 10 9 28 28 H 1.09004 * 110.97555 * 87.89462 * 12 10 9 29 29 H 1.09002 * 109.47398 * 54.36310 * 16 14 13 30 30 H 1.09001 * 109.47194 * 174.36491 * 16 14 13 31 31 H 1.08998 * 110.32590 * 336.26327 * 19 17 16 32 32 H 1.09006 * 110.32366 * 98.47756 * 19 17 16 33 33 H 1.09004 * 110.32125 * 118.89924 * 20 19 17 34 34 H 1.09003 * 110.32829 * 241.10008 * 20 19 17 35 35 H 1.08993 * 110.41293 * 142.62883 * 21 20 19 36 36 H 1.09003 * 110.41297 * 264.95789 * 21 20 19 37 37 H 1.00904 * 111.00303 * 200.96551 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6366 0.0001 11 1 3.6231 -3.1870 0.8524 12 6 5.5702 -2.6697 0.0023 13 8 5.8379 -3.9492 -0.6203 14 6 4.8113 -4.0957 -1.6157 15 1 5.1897 -3.7597 -2.5811 16 6 4.3930 -5.5643 -1.7105 17 6 5.5652 -6.3957 -2.2353 18 1 5.9490 -5.9680 -3.1617 19 6 5.1298 -7.8599 -2.4581 20 6 6.3472 -8.7086 -2.0369 21 6 7.4155 -7.6858 -1.5943 22 7 6.6410 -6.4766 -1.2135 23 8 3.6828 -3.2970 -1.2362 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6797 0.8894 26 1 3.8744 -0.6808 -0.8905 27 1 5.9789 -1.8530 -0.5928 28 1 5.9597 -2.6411 1.0199 29 1 4.1054 -5.9247 -0.7228 30 1 3.5473 -5.6580 -2.3918 31 1 4.2683 -8.0978 -1.8343 32 1 4.8957 -8.0295 -3.5092 33 1 6.0831 -9.3631 -1.2062 34 1 6.7104 -9.2948 -2.8810 35 1 7.9733 -8.0651 -0.7382 36 1 8.0921 -7.4619 -2.4190 37 1 7.2229 -5.6526 -1.2354 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260122505.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:13 Heat of formation + Delta-G solvation = -119.537986 kcal Electronic energy + Delta-G solvation = -17773.681757 eV Core-core repulsion = 14935.558281 eV Total energy + Delta-G solvation = -2838.123476 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.34515 -39.33583 -36.11863 -35.18700 -33.77429 -32.16714 -31.09549 -28.96363 -27.29708 -24.78780 -23.51343 -22.23500 -21.72977 -21.15743 -18.96020 -18.24180 -17.92901 -16.99279 -16.68496 -16.37842 -16.04006 -15.22234 -14.91862 -14.71864 -14.64445 -13.95411 -13.79731 -13.62648 -13.43887 -13.26008 -12.86705 -12.84183 -12.53507 -12.39253 -12.09837 -11.96582 -11.88584 -11.63558 -11.42257 -11.36817 -10.96840 -10.77523 -10.37566 -9.41336 -8.27510 -6.32282 1.37315 1.39871 1.50933 2.37090 2.57680 3.01080 3.12190 3.35334 3.72673 3.77222 3.87941 4.02827 4.09793 4.15934 4.19428 4.33610 4.39879 4.47377 4.64859 4.67925 4.73712 4.80195 4.83653 4.98367 4.99552 5.06560 5.09142 5.22098 5.26256 5.28853 5.40853 5.61334 5.95159 6.24119 6.32296 6.51321 6.74291 7.30131 8.90074 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.054056 B = 0.004834 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.853869 B = 5791.467216 C = 6136.185231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.956 3.044 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.236 1.236 7 C -0.525 4.525 8 H 0.023 0.977 9 C -0.009 4.009 10 C 0.068 3.932 11 H 0.062 0.938 12 C 0.027 3.973 13 O -0.371 6.371 14 C 0.224 3.776 15 H 0.081 0.919 16 C -0.113 4.113 17 C 0.074 3.926 18 H 0.055 0.945 19 C -0.122 4.122 20 C -0.121 4.121 21 C 0.032 3.968 22 N -0.668 5.668 23 O -0.400 6.400 24 H 0.266 0.734 25 H 0.052 0.948 26 H 0.027 0.973 27 H 0.085 0.915 28 H 0.129 0.871 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.046 0.954 37 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.527 -12.329 -4.548 21.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.159 1.159 7 C -0.563 4.563 8 H 0.041 0.959 9 C -0.046 4.046 10 C 0.011 3.989 11 H 0.080 0.920 12 C -0.050 4.050 13 O -0.291 6.291 14 C 0.129 3.871 15 H 0.098 0.902 16 C -0.151 4.151 17 C -0.036 4.036 18 H 0.073 0.927 19 C -0.160 4.160 20 C -0.159 4.159 21 C -0.097 4.097 22 N -0.299 5.299 23 O -0.322 6.322 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.103 0.897 28 H 0.147 0.853 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 16.976 -12.661 -4.046 21.560 hybrid contribution -0.103 1.141 -0.741 1.364 sum 16.873 -11.520 -4.787 20.984 Atomic orbital electron populations 1.70088 1.08546 1.28188 1.52709 1.26094 0.95704 1.03746 0.94057 0.85584 0.79786 0.77642 0.79167 1.19451 1.20960 1.15860 1.21281 0.91788 0.92930 1.50317 0.95881 1.19675 0.94799 0.92168 0.97993 1.23678 0.94526 0.94616 0.86108 0.92026 1.24537 0.93078 0.86254 1.01088 1.89154 1.49758 1.37498 1.52722 1.24202 0.78417 0.92474 0.92019 0.90200 1.21943 0.98432 0.92243 1.02500 1.22325 0.92101 0.95955 0.93195 0.92721 1.22357 0.98779 0.92832 1.02019 1.22294 0.94590 0.97480 1.01537 1.22972 0.95702 0.91372 0.99690 1.63647 1.12859 1.06284 1.47097 1.89003 1.39018 1.62953 1.41200 0.92507 0.93030 0.95496 0.89735 0.85310 0.91885 0.89736 0.91739 0.89966 0.91272 0.89796 0.90039 0.93571 0.84049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.38 13.96 21.45 0.30 -61.08 16 2 C 0.00 0.01 5.47 84.66 0.46 0.47 16 3 Si 0.96 43.90 27.47 68.60 1.88 45.79 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.24 -9.59 6.54 99.48 0.65 -8.94 16 7 C -0.53 -31.29 9.51 25.60 0.24 -31.05 16 8 H 0.02 1.55 7.99 -2.91 -0.02 1.53 16 9 C -0.01 -0.42 3.82 29.85 0.11 -0.31 16 10 C 0.07 2.77 3.62 31.25 0.11 2.88 16 11 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 12 C 0.03 0.80 7.40 72.64 0.54 1.34 16 13 O -0.37 -11.36 9.14 -126.22 -1.15 -12.52 16 14 C 0.22 7.35 4.01 71.98 0.29 7.63 16 15 H 0.08 2.39 8.14 -2.39 -0.02 2.38 16 16 C -0.11 -3.28 4.96 30.59 0.15 -3.12 16 17 C 0.07 1.70 3.12 45.05 0.14 1.84 16 18 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 19 C -0.12 -2.33 6.55 31.49 0.21 -2.12 16 20 C -0.12 -1.96 7.00 31.49 0.22 -1.74 16 21 C 0.03 0.56 7.47 86.45 0.65 1.21 16 22 N -0.67 -15.52 6.61 -478.94 -3.16 -18.69 16 23 O -0.40 -17.33 10.75 -126.22 -1.36 -18.69 16 24 H 0.27 15.87 8.31 -92.70 -0.77 15.10 16 25 H 0.05 2.21 7.20 -2.39 -0.02 2.19 16 26 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 27 H 0.08 2.32 8.04 -2.39 -0.02 2.30 16 28 H 0.13 3.18 8.14 -2.39 -0.02 3.16 16 29 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.06 1.35 7.86 -2.39 -0.02 1.33 16 32 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.34 8.00 7.49 -89.69 -0.67 7.33 16 Total: -1.00 -70.25 295.62 -0.05 -70.30 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.31 Total: 17.86 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: 3.12 Total: -22.97 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: -2.86 Total: -79.77 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -2.51 Total: -31.21 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.88 Total: 45.79 kcal Total: -70.25 -0.05 -70.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122505.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.236 kcal (2) G-P(sol) polarization free energy of solvation -70.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds