Wall clock time and date at job start Mon Mar 30 2020 03:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47200 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47146 * 240.00235 * 3 2 1 6 6 H 1.48504 * 109.47083 * 120.00124 * 3 2 1 7 7 C 1.37871 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99869 * 341.81897 * 7 2 1 9 9 C 1.50696 * 120.00191 * 161.81524 * 7 2 1 10 10 H 1.09009 * 109.50351 * 54.41009 * 9 7 2 11 11 C 1.53093 * 109.50980 * 294.32229 * 9 7 2 12 12 O 1.43015 * 109.26106 * 183.21275 * 11 9 7 13 13 C 1.43017 * 113.73547 * 58.66935 * 12 11 9 14 14 C 1.53096 * 109.25953 * 301.32794 * 13 12 11 15 15 N 1.47011 * 109.50867 * 174.48960 * 9 7 2 16 16 C 1.46895 * 111.00574 * 302.33205 * 15 9 7 17 17 C 1.52999 * 109.47396 * 169.99418 * 16 15 9 18 18 H 1.09003 * 110.45739 * 54.30509 * 17 16 15 19 19 C 1.54515 * 110.51222 * 176.90431 * 17 16 15 20 20 C 1.54471 * 104.06167 * 118.64782 * 19 17 16 21 21 O 1.44420 * 104.80735 * 23.97825 * 20 19 17 22 22 C 1.44644 * 105.36778 * 319.56615 * 21 20 19 23 23 H 0.97004 * 119.99635 * 174.57274 * 1 2 3 24 24 H 1.09002 * 109.50436 * 303.14769 * 11 9 7 25 25 H 1.09003 * 109.50580 * 63.23417 * 11 9 7 26 26 H 1.09001 * 109.51025 * 61.26924 * 13 12 11 27 27 H 1.09005 * 109.50766 * 181.35447 * 13 12 11 28 28 H 1.09006 * 109.50515 * 176.78544 * 14 13 12 29 29 H 1.08998 * 109.51096 * 296.87022 * 14 13 12 30 30 H 1.08999 * 109.47175 * 289.99894 * 16 15 9 31 31 H 1.09006 * 109.47216 * 49.99668 * 16 15 9 32 32 H 1.09002 * 110.50957 * 237.29459 * 19 17 16 33 33 H 1.09003 * 110.50801 * 0.02562 * 19 17 16 34 34 H 1.09003 * 110.37098 * 142.81224 * 20 19 17 35 35 H 1.09005 * 110.37279 * 265.03523 * 20 19 17 36 36 H 1.08989 * 110.34269 * 281.58773 * 22 21 20 37 37 H 1.09001 * 110.50644 * 159.17667 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7464 0.0006 5 1 3.1028 1.6965 -1.2125 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 1.5050 -2.1061 0.2909 9 6 3.4551 -1.2264 -0.4078 10 1 4.0183 -0.5136 0.1947 11 6 3.5790 -0.8551 -1.8879 12 8 4.9481 -0.9602 -2.2876 13 6 5.5041 -2.2644 -2.1000 14 6 5.3998 -2.6500 -0.6220 15 7 3.9934 -2.5784 -0.1995 16 6 3.8418 -2.9956 1.2008 17 6 4.1781 -4.4826 1.3294 18 1 5.1675 -4.6862 0.9198 19 6 4.1013 -4.9293 2.8065 20 6 2.9942 -6.0065 2.8158 21 8 2.9549 -6.5071 1.4617 22 6 3.1101 -5.3426 0.6179 23 1 -0.4850 -0.8363 -0.0795 24 1 2.9720 -1.5350 -2.4857 25 1 3.2332 0.1679 -2.0366 26 1 4.9531 -2.9854 -2.7040 27 1 6.5512 -2.2608 -2.4027 28 1 5.7701 -3.6659 -0.4839 29 1 5.9953 -1.9610 -0.0232 30 1 4.5177 -2.4146 1.8283 31 1 2.8136 -2.8266 1.5210 32 1 5.0520 -5.3559 3.1264 33 1 3.8234 -4.0908 3.4451 34 1 3.2501 -6.8076 3.5093 35 1 2.0358 -5.5632 3.0863 36 1 2.1690 -4.7974 0.5477 37 1 3.4562 -5.6332 -0.3740 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260149840.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:20 Heat of formation + Delta-G solvation = -86.483579 kcal Electronic energy + Delta-G solvation = -18577.475826 eV Core-core repulsion = 15740.785696 eV Total energy + Delta-G solvation = -2836.690130 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.48917 -38.50550 -35.37423 -33.23320 -31.99552 -30.42220 -29.24077 -27.02650 -24.98461 -23.65919 -22.32815 -22.05542 -19.88959 -19.22127 -17.70908 -16.46529 -15.79658 -15.46085 -15.19225 -15.01346 -14.43477 -14.19942 -13.87198 -13.59476 -13.33235 -13.08492 -12.50241 -11.96853 -11.90056 -11.36174 -11.32462 -11.09910 -10.95675 -10.91264 -10.61699 -10.35883 -10.23917 -10.01306 -9.67023 -9.51446 -9.18519 -8.65368 -8.43384 -7.52395 -6.57246 -4.19474 3.31311 3.37465 3.54001 4.19913 4.38737 4.44291 4.58503 4.91986 4.96272 5.11433 5.18071 5.31113 5.48649 5.50799 5.64764 5.73071 5.78808 5.83694 5.88616 6.00252 6.06260 6.10723 6.20074 6.24866 6.30198 6.33071 6.44306 6.59333 6.77260 6.99583 7.03604 7.42504 7.78863 7.86379 8.18970 8.31162 8.83629 9.47333 10.81301 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.022164 B = 0.008851 C = 0.007097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.989385 B = 3162.726873 C = 3944.327197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.036 3.964 3 Si 1.033 2.967 4 H -0.282 1.282 5 H -0.272 1.272 6 H -0.284 1.284 7 C -0.594 4.594 8 H 0.068 0.932 9 C 0.164 3.836 10 H 0.000 1.000 11 C 0.056 3.944 12 O -0.403 6.403 13 C 0.069 3.931 14 C 0.013 3.987 15 N -0.524 5.524 16 C 0.072 3.928 17 C -0.117 4.117 18 H 0.075 0.925 19 C -0.151 4.151 20 C 0.047 3.953 21 O -0.388 6.388 22 C 0.063 3.937 23 H 0.271 0.729 24 H 0.051 0.949 25 H 0.093 0.907 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.024 0.976 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.340 -7.350 2.317 12.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.171 4.171 3 Si 0.861 3.139 4 H -0.208 1.208 5 H -0.198 1.198 6 H -0.211 1.211 7 C -0.632 4.632 8 H 0.086 0.914 9 C 0.056 3.944 10 H 0.017 0.983 11 C -0.021 4.021 12 O -0.322 6.322 13 C -0.009 4.009 14 C -0.116 4.116 15 N -0.249 5.249 16 C -0.056 4.056 17 C -0.136 4.136 18 H 0.094 0.906 19 C -0.189 4.189 20 C -0.030 4.030 21 O -0.307 6.307 22 C -0.013 4.013 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.111 0.889 26 H 0.069 0.931 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.048 0.952 30 H 0.042 0.958 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.912 -6.081 1.945 10.963 hybrid contribution 0.599 -1.086 0.668 1.409 sum 9.511 -7.167 2.614 12.192 Atomic orbital electron populations 1.70838 1.06957 1.30667 1.44453 1.25670 0.96121 1.02125 0.93178 0.84212 0.75571 0.76594 0.77513 1.20789 1.19841 1.21051 1.21865 0.93755 0.96792 1.50796 0.91390 1.20161 0.96879 0.84684 0.92629 0.98265 1.23536 0.79951 1.01958 0.96615 1.87872 1.28544 1.30033 1.85780 1.22467 0.97969 0.85794 0.94640 1.22808 0.91367 1.00378 0.97056 1.62130 1.14373 1.28263 1.20102 1.22078 1.02763 0.91674 0.89057 1.22581 0.99959 0.96637 0.94468 0.90645 1.22965 0.99525 0.99215 0.97209 1.23336 0.98009 0.96456 0.85237 1.89084 1.94612 1.30689 1.16303 1.23419 0.98443 0.85299 0.94187 0.91913 0.93024 0.88887 0.93118 0.89886 0.90939 0.95162 0.95814 0.88684 0.91142 0.90370 0.89751 0.92365 0.91322 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.33 13.70 55.43 0.76 -25.57 16 2 C 0.04 0.98 5.34 -17.82 -0.10 0.89 16 3 Si 1.03 24.44 26.43 -169.99 -4.49 19.94 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.27 -6.06 5.56 56.52 0.31 -5.74 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.59 -15.76 7.91 -34.44 -0.27 -16.03 16 8 H 0.07 1.94 7.06 -52.48 -0.37 1.57 16 9 C 0.16 3.85 1.55 -68.76 -0.11 3.74 16 10 H 0.00 0.00 6.79 -51.92 -0.35 -0.36 16 11 C 0.06 1.26 5.97 37.21 0.22 1.48 16 12 O -0.40 -8.40 10.83 -35.23 -0.38 -8.78 16 13 C 0.07 1.16 7.01 37.21 0.26 1.42 16 14 C 0.01 0.22 5.45 -3.71 -0.02 0.20 16 15 N -0.52 -10.54 4.38 -227.73 -1.00 -11.53 16 16 C 0.07 1.33 3.90 -3.83 -0.01 1.32 16 17 C -0.12 -1.78 3.05 -89.05 -0.27 -2.05 16 18 H 0.08 1.09 6.35 -51.93 -0.33 0.76 16 19 C -0.15 -1.96 6.74 -25.16 -0.17 -2.13 16 20 C 0.05 0.62 7.63 37.93 0.29 0.91 16 21 O -0.39 -6.26 11.65 -35.23 -0.41 -6.67 16 22 C 0.06 1.02 7.06 37.93 0.27 1.29 16 23 H 0.27 7.94 8.73 -40.82 -0.36 7.58 16 24 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 25 H 0.09 2.17 4.86 -51.93 -0.25 1.92 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.07 1.06 6.30 -51.93 -0.33 0.74 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.44 8.12 -51.93 -0.42 0.01 16 31 H 0.09 1.99 6.03 -51.93 -0.31 1.68 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.99 7.73 -51.93 -0.40 0.59 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.25 7.78 -51.94 -0.40 0.84 16 37 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 283.26 15.07 4.27 4.27 Total: -1.00 -29.00 283.26 -6.96 -35.96 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.79 Total: 1.35 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: -0.24 Total: -37.10 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.79 Total: -15.46 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -4.49 Total: 19.94 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.00 -6.96 -35.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260149840.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.523 kcal (2) G-P(sol) polarization free energy of solvation -29.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds