Wall clock time and date at job start Mon Mar 30 2020 03:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47200 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47146 * 240.00235 * 3 2 1 6 6 H 1.48504 * 109.47083 * 120.00124 * 3 2 1 7 7 C 1.37871 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99869 * 341.81897 * 7 2 1 9 9 C 1.50696 * 120.00191 * 161.81524 * 7 2 1 10 10 H 1.09009 * 109.50351 * 54.41009 * 9 7 2 11 11 C 1.53093 * 109.50980 * 294.32229 * 9 7 2 12 12 O 1.43015 * 109.26106 * 183.21275 * 11 9 7 13 13 C 1.43017 * 113.73547 * 58.66935 * 12 11 9 14 14 C 1.53096 * 109.25953 * 301.32794 * 13 12 11 15 15 N 1.47011 * 109.50867 * 174.48960 * 9 7 2 16 16 C 1.46895 * 111.00574 * 302.33205 * 15 9 7 17 17 C 1.52999 * 109.47396 * 169.99418 * 16 15 9 18 18 H 1.09003 * 110.45739 * 54.30509 * 17 16 15 19 19 C 1.54515 * 110.51222 * 176.90431 * 17 16 15 20 20 C 1.54471 * 104.06167 * 118.64782 * 19 17 16 21 21 O 1.44420 * 104.80735 * 23.97825 * 20 19 17 22 22 C 1.44644 * 105.36778 * 319.56615 * 21 20 19 23 23 H 0.97004 * 119.99635 * 174.57274 * 1 2 3 24 24 H 1.09002 * 109.50436 * 303.14769 * 11 9 7 25 25 H 1.09003 * 109.50580 * 63.23417 * 11 9 7 26 26 H 1.09001 * 109.51025 * 61.26924 * 13 12 11 27 27 H 1.09005 * 109.50766 * 181.35447 * 13 12 11 28 28 H 1.09006 * 109.50515 * 176.78544 * 14 13 12 29 29 H 1.08998 * 109.51096 * 296.87022 * 14 13 12 30 30 H 1.08999 * 109.47175 * 289.99894 * 16 15 9 31 31 H 1.09006 * 109.47216 * 49.99668 * 16 15 9 32 32 H 1.09002 * 110.50957 * 237.29459 * 19 17 16 33 33 H 1.09003 * 110.50801 * 0.02562 * 19 17 16 34 34 H 1.09003 * 110.37098 * 142.81224 * 20 19 17 35 35 H 1.09005 * 110.37279 * 265.03523 * 20 19 17 36 36 H 1.08989 * 110.34269 * 281.58773 * 22 21 20 37 37 H 1.09001 * 110.50644 * 159.17667 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7464 0.0006 5 1 3.1028 1.6965 -1.2125 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 1.5050 -2.1061 0.2909 9 6 3.4551 -1.2264 -0.4078 10 1 4.0183 -0.5136 0.1947 11 6 3.5790 -0.8551 -1.8879 12 8 4.9481 -0.9602 -2.2876 13 6 5.5041 -2.2644 -2.1000 14 6 5.3998 -2.6500 -0.6220 15 7 3.9934 -2.5784 -0.1995 16 6 3.8418 -2.9956 1.2008 17 6 4.1781 -4.4826 1.3294 18 1 5.1675 -4.6862 0.9198 19 6 4.1013 -4.9293 2.8065 20 6 2.9942 -6.0065 2.8158 21 8 2.9549 -6.5071 1.4617 22 6 3.1101 -5.3426 0.6179 23 1 -0.4850 -0.8363 -0.0795 24 1 2.9720 -1.5350 -2.4857 25 1 3.2332 0.1679 -2.0366 26 1 4.9531 -2.9854 -2.7040 27 1 6.5512 -2.2608 -2.4027 28 1 5.7701 -3.6659 -0.4839 29 1 5.9953 -1.9610 -0.0232 30 1 4.5177 -2.4146 1.8283 31 1 2.8136 -2.8266 1.5210 32 1 5.0520 -5.3559 3.1264 33 1 3.8234 -4.0908 3.4451 34 1 3.2501 -6.8076 3.5093 35 1 2.0358 -5.5632 3.0863 36 1 2.1690 -4.7974 0.5477 37 1 3.4562 -5.6332 -0.3740 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260149840.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:20 Heat of formation + Delta-G solvation = -108.403552 kcal Electronic energy + Delta-G solvation = -18578.426347 eV Core-core repulsion = 15740.785696 eV Total energy + Delta-G solvation = -2837.640651 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.89102 -39.93547 -36.92943 -35.19591 -33.38629 -32.15422 -30.45166 -28.54124 -26.82839 -25.13697 -23.73886 -23.51705 -21.24888 -20.85276 -19.76793 -17.81260 -17.18971 -16.99435 -16.59362 -16.37439 -16.06522 -15.68920 -15.51708 -15.24490 -14.79190 -14.50183 -13.96023 -13.72396 -13.47509 -13.06142 -12.85881 -12.49902 -12.40317 -12.10486 -12.02104 -11.94636 -11.84777 -11.71160 -11.20086 -10.99681 -10.78924 -10.54921 -10.40926 -9.13910 -8.77890 -6.39347 1.42479 1.45655 1.66636 2.42229 2.90253 2.95139 3.04707 3.12741 3.70166 3.78954 3.94904 4.10171 4.15670 4.27894 4.29874 4.37393 4.43930 4.49003 4.53114 4.67391 4.74348 4.79953 4.83445 4.86474 4.89154 4.96112 4.97789 5.06498 5.20359 5.29062 5.61497 5.81695 5.97791 6.09996 6.28870 6.47768 6.65777 7.35171 8.59806 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.022164 B = 0.008851 C = 0.007097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.989385 B = 3162.726873 C = 3944.327197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 1.070 2.930 4 H -0.284 1.284 5 H -0.248 1.248 6 H -0.271 1.271 7 C -0.586 4.586 8 H 0.034 0.966 9 C 0.167 3.833 10 H -0.009 1.009 11 C 0.065 3.935 12 O -0.411 6.411 13 C 0.060 3.940 14 C 0.013 3.987 15 N -0.536 5.536 16 C 0.078 3.922 17 C -0.108 4.108 18 H 0.096 0.904 19 C -0.145 4.145 20 C 0.040 3.960 21 O -0.401 6.401 22 C 0.066 3.934 23 H 0.256 0.744 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.054 0.946 27 H 0.124 0.876 28 H 0.105 0.895 29 H 0.031 0.969 30 H 0.027 0.973 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.050 0.950 36 H 0.035 0.965 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.352 -7.964 2.461 14.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.211 4.211 3 Si 0.893 3.107 4 H -0.210 1.210 5 H -0.173 1.173 6 H -0.197 1.197 7 C -0.624 4.624 8 H 0.052 0.948 9 C 0.059 3.941 10 H 0.009 0.991 11 C -0.012 4.012 12 O -0.330 6.330 13 C -0.016 4.016 14 C -0.115 4.115 15 N -0.261 5.261 16 C -0.050 4.050 17 C -0.127 4.127 18 H 0.114 0.886 19 C -0.183 4.183 20 C -0.036 4.036 21 O -0.320 6.320 22 C -0.011 4.011 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.102 0.898 26 H 0.072 0.928 27 H 0.142 0.858 28 H 0.123 0.877 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.132 0.868 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.947 -6.726 2.092 13.869 hybrid contribution -0.326 -1.035 0.650 1.264 sum 11.622 -7.760 2.741 14.241 Atomic orbital electron populations 1.70951 1.08118 1.29793 1.47529 1.26894 0.96071 1.05527 0.92569 0.83733 0.75017 0.72976 0.79014 1.20980 1.17313 1.19678 1.21946 0.95571 0.95330 1.49531 0.94789 1.19963 0.94616 0.86558 0.92995 0.99136 1.23187 0.81277 1.01108 0.95587 1.87854 1.26995 1.32460 1.85673 1.22837 1.00043 0.84111 0.94620 1.22940 0.89122 1.02386 0.97066 1.62079 1.16830 1.25994 1.21177 1.21982 1.00626 0.94136 0.88235 1.22506 1.00204 0.93724 0.96227 0.88628 1.22974 1.00712 0.99127 0.95492 1.23556 0.97994 0.97660 0.84425 1.89072 1.94674 1.30661 1.17594 1.23284 0.97349 0.85476 0.94947 0.93483 0.94172 0.89775 0.92755 0.85808 0.87701 0.95039 0.95482 0.92428 0.88374 0.90407 0.86759 0.93204 0.94620 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.62 13.70 21.45 0.29 -56.33 16 2 C -0.01 -0.59 5.34 84.65 0.45 -0.13 16 3 Si 1.07 49.32 26.43 68.60 1.81 51.14 16 4 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.25 -10.45 5.56 99.48 0.55 -9.89 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.59 -32.08 7.91 25.60 0.20 -31.88 16 8 H 0.03 2.06 7.06 -2.91 -0.02 2.03 16 9 C 0.17 7.80 1.55 44.18 0.07 7.87 16 10 H -0.01 -0.42 6.79 -2.38 -0.02 -0.44 16 11 C 0.07 2.90 5.97 72.01 0.43 3.33 16 12 O -0.41 -16.09 10.83 -148.98 -1.61 -17.71 16 13 C 0.06 1.83 7.01 72.01 0.50 2.33 16 14 C 0.01 0.40 5.45 86.31 0.47 0.87 16 15 N -0.54 -21.03 4.38 -874.39 -3.83 -24.86 16 16 C 0.08 2.84 3.90 86.30 0.34 3.18 16 17 C -0.11 -3.06 3.05 -9.78 -0.03 -3.09 16 18 H 0.10 2.37 6.35 -2.39 -0.02 2.36 16 19 C -0.14 -3.39 6.74 31.61 0.21 -3.18 16 20 C 0.04 0.99 7.63 72.48 0.55 1.54 16 21 O -0.40 -12.44 11.65 -148.98 -1.74 -14.18 16 22 C 0.07 2.11 7.06 72.48 0.51 2.62 16 23 H 0.26 15.86 8.73 -92.71 -0.81 15.05 16 24 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.08 3.85 4.86 -2.39 -0.01 3.84 16 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.12 2.79 8.14 -2.38 -0.02 2.77 16 28 H 0.10 2.59 6.30 -2.38 -0.02 2.58 16 29 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.03 0.96 8.12 -2.39 -0.02 0.94 16 31 H 0.06 2.52 6.03 -2.38 -0.01 2.50 16 32 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.08 1.84 7.73 -2.39 -0.02 1.82 16 34 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.04 1.36 7.78 -2.39 -0.02 1.34 16 37 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -64.21 283.26 -0.50 -64.71 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.85 Total: 13.76 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: 3.71 Total: -16.53 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: -3.53 Total: -81.19 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -3.35 Total: -31.89 kcal Atomic # 14 Polarization: 49.32 SS G_CDS: 1.81 Total: 51.14 kcal Total: -64.21 -0.50 -64.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260149840.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.691 kcal (2) G-P(sol) polarization free energy of solvation -64.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds