Wall clock time and date at job start Mon Mar 30 2020 03:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99868 * 2 1 4 4 H 1.48504 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47285 * 299.99514 * 3 2 1 6 6 H 1.48502 * 109.47352 * 59.99739 * 3 2 1 7 7 C 1.37881 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00097 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99794 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.54112 * 300.10734 * 9 7 2 11 11 C 1.53096 * 109.50838 * 60.21545 * 9 7 2 12 12 O 1.43010 * 109.25899 * 176.78427 * 11 9 7 13 13 C 1.43018 * 113.73800 * 301.32825 * 12 11 9 14 14 C 1.53102 * 109.25642 * 58.66960 * 13 12 11 15 15 N 1.47012 * 109.25891 * 303.15104 * 14 13 12 16 16 C 1.46895 * 110.99784 * 182.38908 * 15 14 13 17 17 C 1.53003 * 109.46945 * 75.66976 * 16 15 14 18 18 H 1.08998 * 110.43275 * 307.42343 * 17 16 15 19 19 C 1.54813 * 110.49121 * 70.11318 * 17 16 15 20 20 C 1.54993 * 102.08984 * 139.55824 * 19 17 16 21 21 O 1.44573 * 103.58639 * 323.05553 * 20 19 17 22 22 C 1.43745 * 106.87432 * 39.88345 * 21 20 19 23 23 H 0.97005 * 119.99875 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.50789 * 56.84575 * 11 9 7 25 25 H 1.09000 * 109.54093 * 296.74069 * 11 9 7 26 26 H 1.09000 * 109.50456 * 298.73848 * 13 12 11 27 27 H 1.09001 * 109.54733 * 178.62952 * 13 12 11 28 28 H 1.09003 * 109.50364 * 183.21690 * 14 13 12 29 29 H 1.09003 * 109.53687 * 63.11230 * 14 13 12 30 30 H 1.08997 * 109.47375 * 315.66618 * 16 15 14 31 31 H 1.09000 * 109.47274 * 195.66655 * 16 15 14 32 32 H 1.08998 * 110.90668 * 257.75957 * 19 17 16 33 33 H 1.09004 * 110.90283 * 21.35956 * 19 17 16 34 34 H 1.08996 * 110.61962 * 81.48332 * 20 19 17 35 35 H 1.09006 * 110.61486 * 204.47833 * 20 19 17 36 36 H 1.08996 * 109.87743 * 214.17426 * 22 21 20 37 37 H 1.08998 * 109.87571 * 93.16528 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6221 -2.5571 0.8890 11 6 0.3751 -2.5838 -1.2522 12 8 -0.2797 -3.8547 -1.2850 13 6 0.6204 -4.9662 -1.2861 14 6 1.4989 -4.9057 -0.0336 15 7 2.2057 -3.6171 0.0011 16 6 3.1048 -3.5410 1.1603 17 6 4.3505 -4.3891 0.8960 18 1 4.0675 -5.3995 0.6010 19 6 5.2333 -3.7311 -0.1923 20 6 6.6612 -3.9615 0.3647 21 8 6.4991 -3.7995 1.7922 22 6 5.2535 -4.4248 2.1443 23 1 -0.4850 0.8401 -0.0004 24 1 0.9977 -2.4720 -2.1399 25 1 -0.3717 -1.7901 -1.2292 26 1 1.2501 -4.9237 -2.1747 27 1 0.0516 -5.8961 -1.2872 28 1 2.2247 -5.7185 -0.0586 29 1 0.8745 -5.0025 0.8546 30 1 2.5902 -3.9169 2.0446 31 1 3.3991 -2.5044 1.3244 32 1 5.1047 -4.2312 -1.1522 33 1 5.0162 -2.6663 -0.2778 34 1 7.0063 -4.9687 0.1314 35 1 7.3521 -3.2167 -0.0305 36 1 4.7810 -3.8766 2.9593 37 1 5.4294 -5.4575 2.4452 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260149846.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:22 Heat of formation + Delta-G solvation = -88.043462 kcal Electronic energy + Delta-G solvation = -18535.354899 eV Core-core repulsion = 15698.597127 eV Total energy + Delta-G solvation = -2836.757771 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.36083 -38.31458 -35.17027 -33.20287 -31.79310 -29.87608 -29.32294 -26.82437 -25.27870 -23.21968 -22.31413 -22.21034 -19.87970 -19.22684 -16.70794 -16.29646 -15.77838 -15.27344 -15.08016 -14.73143 -14.46077 -14.14162 -13.64511 -13.57345 -13.05586 -12.72260 -12.52091 -12.13345 -11.67477 -11.14116 -11.03893 -10.88411 -10.83715 -10.67082 -10.58872 -10.50998 -10.36671 -10.00258 -9.66707 -9.37580 -9.11466 -8.71370 -8.39997 -7.32232 -6.15189 -4.19279 3.24274 3.32875 3.37073 4.17520 4.31284 4.61494 4.88478 5.01087 5.12941 5.19074 5.31537 5.38772 5.51985 5.66881 5.75472 5.84968 5.87145 5.90755 5.98373 6.07984 6.22861 6.27806 6.32560 6.44413 6.56798 6.65067 6.71368 6.89051 7.08229 7.26904 7.49065 7.66520 7.85542 8.14014 8.16852 8.49371 8.87856 9.46276 10.92830 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.017298 B = 0.010022 C = 0.006896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.266577 B = 2793.317975 C = 4059.274628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.507 4.507 8 H 0.068 0.932 9 C 0.188 3.812 10 H 0.007 0.993 11 C 0.069 3.931 12 O -0.404 6.404 13 C 0.068 3.932 14 C 0.018 3.982 15 N -0.530 5.530 16 C 0.069 3.931 17 C -0.115 4.115 18 H 0.074 0.926 19 C -0.133 4.133 20 C 0.042 3.958 21 O -0.383 6.383 22 C 0.051 3.949 23 H 0.264 0.736 24 H 0.033 0.967 25 H 0.122 0.878 26 H 0.046 0.954 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.028 0.972 30 H 0.021 0.979 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.098 -8.702 0.012 11.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.086 0.914 9 C 0.082 3.918 10 H 0.025 0.975 11 C -0.007 4.007 12 O -0.324 6.324 13 C -0.010 4.010 14 C -0.111 4.111 15 N -0.255 5.255 16 C -0.060 4.060 17 C -0.134 4.134 18 H 0.092 0.908 19 C -0.170 4.170 20 C -0.034 4.034 21 O -0.302 6.302 22 C -0.026 4.026 23 H 0.074 0.926 24 H 0.052 0.948 25 H 0.140 0.860 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.047 0.953 30 H 0.039 0.961 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.160 -8.437 -0.274 11.069 hybrid contribution 0.023 0.657 0.613 0.899 sum 7.184 -7.780 0.340 10.595 Atomic orbital electron populations 1.69859 1.05930 1.26937 1.50361 1.24990 0.94946 0.99424 0.94823 0.86414 0.80115 0.83170 0.77639 1.19568 1.20890 1.20998 1.21086 0.93411 0.89185 1.50894 0.91381 1.19840 0.89544 0.88158 0.94284 0.97491 1.23131 0.97510 0.82729 0.97297 1.87910 1.33863 1.15578 1.95014 1.22415 0.91996 0.90200 0.96359 1.22732 0.96443 0.93875 0.98013 1.62218 1.20785 1.01907 1.40627 1.22102 0.91718 1.01143 0.90993 1.22540 0.96263 1.00041 0.94565 0.90807 1.23023 0.92531 1.03075 0.98393 1.23649 0.98148 1.00370 0.81280 1.88872 1.39247 1.78805 1.23262 1.23193 0.84430 0.97090 0.97915 0.92616 0.94845 0.86010 0.93600 0.90431 0.91632 0.95348 0.96080 0.88623 0.90555 0.89536 0.92918 0.89451 0.89918 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.76 11.38 55.43 0.63 -24.13 16 2 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 3 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -13.31 7.66 -34.44 -0.26 -13.57 16 8 H 0.07 1.78 6.71 -52.49 -0.35 1.42 16 9 C 0.19 4.67 1.97 -68.75 -0.14 4.54 16 10 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 11 C 0.07 1.71 6.02 37.21 0.22 1.94 16 12 O -0.40 -9.20 10.83 -35.23 -0.38 -9.58 16 13 C 0.07 1.24 7.01 37.21 0.26 1.50 16 14 C 0.02 0.33 5.47 -3.71 -0.02 0.31 16 15 N -0.53 -10.99 4.35 -227.73 -0.99 -11.98 16 16 C 0.07 1.29 3.91 -3.83 -0.01 1.27 16 17 C -0.11 -1.75 3.12 -89.09 -0.28 -2.03 16 18 H 0.07 1.05 6.75 -51.93 -0.35 0.70 16 19 C -0.13 -2.00 6.60 -24.72 -0.16 -2.16 16 20 C 0.04 0.56 7.72 38.21 0.29 0.86 16 21 O -0.38 -6.06 11.54 -35.23 -0.41 -6.47 16 22 C 0.05 0.73 7.36 37.73 0.28 1.01 16 23 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 24 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.12 3.29 6.19 -51.93 -0.32 2.97 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.07 1.01 6.74 -51.93 -0.35 0.66 16 29 H 0.03 0.54 8.13 -51.93 -0.42 0.12 16 30 H 0.02 0.39 7.99 -51.93 -0.41 -0.02 16 31 H 0.10 2.03 5.77 -51.93 -0.30 1.73 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.09 1.52 7.77 -51.93 -0.40 1.11 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 1.18 7.69 -51.93 -0.40 0.78 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 288.27 15.07 4.34 4.34 Total: -1.00 -28.26 288.27 -7.57 -35.82 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.83 Total: 1.07 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 0.09 Total: -4.83 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: -0.36 Total: -36.10 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.79 Total: -16.05 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.26 -7.57 -35.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260149846.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.219 kcal (2) G-P(sol) polarization free energy of solvation -28.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds