Wall clock time and date at job start Mon Mar 30 2020 03:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99868 * 2 1 4 4 H 1.48504 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47285 * 299.99514 * 3 2 1 6 6 H 1.48502 * 109.47352 * 59.99739 * 3 2 1 7 7 C 1.37881 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00097 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99794 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.54112 * 300.10734 * 9 7 2 11 11 C 1.53096 * 109.50838 * 60.21545 * 9 7 2 12 12 O 1.43010 * 109.25899 * 176.78427 * 11 9 7 13 13 C 1.43018 * 113.73800 * 301.32825 * 12 11 9 14 14 C 1.53102 * 109.25642 * 58.66960 * 13 12 11 15 15 N 1.47012 * 109.25891 * 303.15104 * 14 13 12 16 16 C 1.46895 * 110.99784 * 182.38908 * 15 14 13 17 17 C 1.53003 * 109.46945 * 75.66976 * 16 15 14 18 18 H 1.08998 * 110.43275 * 307.42343 * 17 16 15 19 19 C 1.54813 * 110.49121 * 70.11318 * 17 16 15 20 20 C 1.54993 * 102.08984 * 139.55824 * 19 17 16 21 21 O 1.44573 * 103.58639 * 323.05553 * 20 19 17 22 22 C 1.43745 * 106.87432 * 39.88345 * 21 20 19 23 23 H 0.97005 * 119.99875 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.50789 * 56.84575 * 11 9 7 25 25 H 1.09000 * 109.54093 * 296.74069 * 11 9 7 26 26 H 1.09000 * 109.50456 * 298.73848 * 13 12 11 27 27 H 1.09001 * 109.54733 * 178.62952 * 13 12 11 28 28 H 1.09003 * 109.50364 * 183.21690 * 14 13 12 29 29 H 1.09003 * 109.53687 * 63.11230 * 14 13 12 30 30 H 1.08997 * 109.47375 * 315.66618 * 16 15 14 31 31 H 1.09000 * 109.47274 * 195.66655 * 16 15 14 32 32 H 1.08998 * 110.90668 * 257.75957 * 19 17 16 33 33 H 1.09004 * 110.90283 * 21.35956 * 19 17 16 34 34 H 1.08996 * 110.61962 * 81.48332 * 20 19 17 35 35 H 1.09006 * 110.61486 * 204.47833 * 20 19 17 36 36 H 1.08996 * 109.87743 * 214.17426 * 22 21 20 37 37 H 1.08998 * 109.87571 * 93.16528 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6221 -2.5571 0.8890 11 6 0.3751 -2.5838 -1.2522 12 8 -0.2797 -3.8547 -1.2850 13 6 0.6204 -4.9662 -1.2861 14 6 1.4989 -4.9057 -0.0336 15 7 2.2057 -3.6171 0.0011 16 6 3.1048 -3.5410 1.1603 17 6 4.3505 -4.3891 0.8960 18 1 4.0675 -5.3995 0.6010 19 6 5.2333 -3.7311 -0.1923 20 6 6.6612 -3.9615 0.3647 21 8 6.4991 -3.7995 1.7922 22 6 5.2535 -4.4248 2.1443 23 1 -0.4850 0.8401 -0.0004 24 1 0.9977 -2.4720 -2.1399 25 1 -0.3717 -1.7901 -1.2292 26 1 1.2501 -4.9237 -2.1747 27 1 0.0516 -5.8961 -1.2872 28 1 2.2247 -5.7185 -0.0586 29 1 0.8745 -5.0025 0.8546 30 1 2.5902 -3.9169 2.0446 31 1 3.3991 -2.5044 1.3244 32 1 5.1047 -4.2312 -1.1522 33 1 5.0162 -2.6663 -0.2778 34 1 7.0063 -4.9687 0.1314 35 1 7.3521 -3.2167 -0.0305 36 1 4.7810 -3.8766 2.9593 37 1 5.4294 -5.4575 2.4452 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260149846.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:22 Heat of formation + Delta-G solvation = -108.225894 kcal Electronic energy + Delta-G solvation = -18536.230074 eV Core-core repulsion = 15698.597127 eV Total energy + Delta-G solvation = -2837.632947 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.73945 -39.83179 -36.80986 -35.13717 -33.18540 -31.66946 -30.50396 -28.41719 -27.20188 -24.75798 -24.03119 -23.35113 -21.28757 -20.89068 -18.62262 -17.74576 -17.08021 -16.88277 -16.68247 -16.27404 -15.85089 -15.73803 -15.42987 -15.15104 -14.61172 -14.23363 -13.99542 -13.68276 -13.24457 -12.90271 -12.62553 -12.46641 -12.40869 -12.11547 -12.09314 -12.03512 -11.85315 -11.69065 -11.19929 -10.97914 -10.72956 -10.54932 -10.23365 -9.05133 -8.20318 -6.31153 1.39177 1.41770 1.53294 2.37527 3.01754 3.05331 3.12874 3.32161 3.78181 3.85381 4.13446 4.18409 4.29975 4.36326 4.38658 4.43193 4.58689 4.61222 4.67373 4.76911 4.86623 4.87462 4.91663 4.96295 5.00150 5.08613 5.23827 5.31408 5.40441 5.51691 5.65328 5.97654 5.98641 6.24472 6.45996 6.64079 6.83525 7.38118 8.87492 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.017298 B = 0.010022 C = 0.006896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.266577 B = 2793.317975 C = 4059.274628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.013 3.987 3 Si 0.961 3.039 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.282 1.282 7 C -0.516 4.516 8 H 0.065 0.935 9 C 0.196 3.804 10 H -0.038 1.038 11 C 0.083 3.917 12 O -0.421 6.421 13 C 0.060 3.940 14 C 0.017 3.983 15 N -0.531 5.531 16 C 0.072 3.928 17 C -0.106 4.106 18 H 0.095 0.905 19 C -0.133 4.133 20 C 0.046 3.954 21 O -0.405 6.405 22 C 0.052 3.948 23 H 0.265 0.735 24 H 0.029 0.971 25 H 0.092 0.908 26 H 0.056 0.944 27 H 0.116 0.884 28 H 0.106 0.894 29 H 0.018 0.982 30 H 0.019 0.981 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.749 -10.374 -0.372 13.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.787 3.213 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.208 1.208 7 C -0.554 4.554 8 H 0.083 0.917 9 C 0.088 3.912 10 H -0.020 1.020 11 C 0.007 3.993 12 O -0.341 6.341 13 C -0.017 4.017 14 C -0.111 4.111 15 N -0.256 5.256 16 C -0.056 4.056 17 C -0.125 4.125 18 H 0.114 0.886 19 C -0.171 4.171 20 C -0.030 4.030 21 O -0.325 6.325 22 C -0.025 4.025 23 H 0.074 0.926 24 H 0.048 0.952 25 H 0.110 0.890 26 H 0.074 0.926 27 H 0.134 0.866 28 H 0.124 0.876 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.093 0.907 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.825 -10.132 -0.658 13.452 hybrid contribution -0.506 1.091 0.744 1.414 sum 8.319 -9.041 0.086 12.286 Atomic orbital electron populations 1.69990 1.07251 1.27679 1.51140 1.25758 0.95677 1.02615 0.94536 0.85445 0.79002 0.79238 0.77638 1.19076 1.20325 1.20810 1.21301 0.93333 0.90212 1.50575 0.91722 1.19569 0.89649 0.89560 0.92396 1.02012 1.22712 0.96375 0.83389 0.96858 1.87864 1.35294 1.15830 1.95114 1.22792 0.92280 0.89869 0.96725 1.22867 0.97195 0.93445 0.97584 1.62218 1.19973 1.01931 1.41465 1.22063 0.92933 1.00216 0.90412 1.22470 0.94505 1.00087 0.95408 0.88633 1.22970 0.93937 1.01080 0.99066 1.23768 0.97059 1.02294 0.79918 1.88851 1.39647 1.79403 1.24617 1.23242 0.83749 0.98455 0.97050 0.92566 0.95230 0.89016 0.92589 0.86580 0.87640 0.96365 0.96239 0.91839 0.89391 0.92826 0.90188 0.88516 0.90687 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.78 11.38 21.45 0.24 -52.54 16 2 C 0.01 0.73 5.30 84.65 0.45 1.18 16 3 Si 0.96 43.32 29.54 68.60 2.03 45.35 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.52 -27.88 7.66 25.60 0.20 -27.68 16 8 H 0.06 3.47 6.71 -2.91 -0.02 3.45 16 9 C 0.20 10.02 1.97 44.18 0.09 10.11 16 10 H -0.04 -2.22 8.14 -2.38 -0.02 -2.24 16 11 C 0.08 4.22 6.02 72.01 0.43 4.66 16 12 O -0.42 -19.11 10.83 -148.98 -1.61 -20.72 16 13 C 0.06 2.05 7.01 72.02 0.50 2.56 16 14 C 0.02 0.59 5.47 86.32 0.47 1.07 16 15 N -0.53 -21.82 4.35 -874.39 -3.80 -25.62 16 16 C 0.07 2.68 3.91 86.31 0.34 3.02 16 17 C -0.11 -2.99 3.12 -9.80 -0.03 -3.02 16 18 H 0.10 2.32 6.75 -2.39 -0.02 2.30 16 19 C -0.13 -3.76 6.60 31.89 0.21 -3.55 16 20 C 0.05 1.09 7.72 72.66 0.56 1.65 16 21 O -0.41 -11.97 11.54 -148.98 -1.72 -13.69 16 22 C 0.05 1.37 7.36 72.36 0.53 1.90 16 23 H 0.27 14.39 8.31 -92.70 -0.77 13.62 16 24 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.09 5.18 6.19 -2.39 -0.01 5.17 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 28 H 0.11 2.80 6.74 -2.39 -0.02 2.78 16 29 H 0.02 0.67 8.13 -2.39 -0.02 0.65 16 30 H 0.02 0.72 7.99 -2.39 -0.02 0.70 16 31 H 0.06 2.77 5.77 -2.39 -0.01 2.76 16 32 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.05 1.87 7.77 -2.39 -0.02 1.85 16 34 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.07 2.06 7.69 -2.39 -0.02 2.04 16 37 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -62.69 288.27 -0.07 -62.76 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 1.04 Total: 12.57 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 3.75 Total: -8.11 kcal Atomic # 7 Polarization: -74.60 SS G_CDS: -3.56 Total: -78.16 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -3.33 Total: -34.41 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -62.69 -0.07 -62.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260149846.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.467 kcal (2) G-P(sol) polarization free energy of solvation -62.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds