Wall clock time and date at job start Mon Mar 30 2020 03:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00042 * 2 1 4 4 H 1.48503 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47472 * 59.98937 * 3 2 1 6 6 H 1.48503 * 109.46963 * 299.99192 * 3 2 1 7 7 C 1.37877 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99376 * 173.13582 * 7 2 1 9 9 C 1.50696 * 120.00327 * 353.14127 * 7 2 1 10 10 H 1.09002 * 109.50342 * 331.52904 * 9 7 2 11 11 C 1.53097 * 109.50829 * 91.61442 * 9 7 2 12 12 O 1.43021 * 109.25581 * 176.73674 * 11 9 7 13 13 C 1.43009 * 113.77954 * 301.39999 * 12 11 9 14 14 C 1.53101 * 109.25837 * 58.64452 * 13 12 11 15 15 N 1.47011 * 109.50937 * 211.44397 * 9 7 2 16 16 C 1.46904 * 110.99835 * 57.66975 * 15 9 7 17 17 C 1.53004 * 109.46957 * 176.39804 * 16 15 9 18 18 H 1.09007 * 110.80082 * 304.95501 * 17 16 15 19 19 C 1.54801 * 110.90596 * 181.32646 * 17 16 15 20 20 C 1.54104 * 104.18715 * 220.91717 * 19 17 16 21 21 O 1.43742 * 107.29469 * 357.97383 * 20 19 17 22 22 C 1.44377 * 106.97497 * 26.50883 * 21 20 19 23 23 H 0.97003 * 119.99993 * 183.77908 * 1 2 3 24 24 H 1.09000 * 109.50806 * 296.71999 * 11 9 7 25 25 H 1.09000 * 109.50561 * 56.85010 * 11 9 7 26 26 H 1.08996 * 109.50866 * 298.71157 * 13 12 11 27 27 H 1.08999 * 109.51207 * 178.57852 * 13 12 11 28 28 H 1.09002 * 109.50999 * 183.21754 * 14 13 12 29 29 H 1.09000 * 109.54117 * 63.10625 * 14 13 12 30 30 H 1.09000 * 109.47019 * 296.39213 * 16 15 9 31 31 H 1.09000 * 109.47060 * 56.39795 * 16 15 9 32 32 H 1.09002 * 110.49086 * 339.59467 * 19 17 16 33 33 H 1.09007 * 110.49319 * 102.24742 * 19 17 16 34 34 H 1.09001 * 109.87540 * 117.39603 * 20 19 17 35 35 H 1.09002 * 109.88077 * 238.39350 * 20 19 17 36 36 H 1.09002 * 110.62042 * 201.43848 * 22 21 20 37 37 H 1.09008 * 110.61883 * 78.43889 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8903 2.3966 1.2123 6 1 1.8905 2.3963 -1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0787 -1.1974 -0.1113 9 6 1.2592 -2.4944 0.1570 10 1 0.3504 -2.3258 0.7348 11 6 0.8922 -3.0428 -1.2245 12 8 0.2528 -4.3131 -1.0732 13 6 1.0548 -5.2855 -0.3977 14 6 1.4225 -4.7593 0.9923 15 7 2.1113 -3.4678 0.8553 16 6 2.5325 -2.9541 2.1656 17 6 3.3407 -4.0271 2.8982 18 1 2.7742 -4.9555 2.9717 19 6 3.7740 -3.5317 4.2993 20 6 5.2227 -4.0359 4.4468 21 8 5.5380 -4.7831 3.2600 22 6 4.7047 -4.2642 2.2014 23 1 -0.4850 -0.8382 0.0554 24 1 0.2138 -2.3501 -1.7226 25 1 1.7966 -3.1601 -1.8215 26 1 1.9643 -5.4682 -0.9699 27 1 0.4938 -6.2147 -0.2983 28 1 2.0809 -5.4721 1.4889 29 1 0.5164 -4.6276 1.5837 30 1 3.1494 -2.0663 2.0265 31 1 1.6524 -2.6965 2.7548 32 1 3.7422 -2.4431 4.3458 33 1 3.1385 -3.9662 5.0711 34 1 5.9019 -3.1888 4.5429 35 1 5.3044 -4.6775 5.3242 36 1 4.6040 -4.9950 1.3989 37 1 5.1087 -3.3265 1.8195 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260149848.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:24 Heat of formation + Delta-G solvation = -92.051026 kcal Electronic energy + Delta-G solvation = -18529.804836 eV Core-core repulsion = 15692.873284 eV Total energy + Delta-G solvation = -2836.931552 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.51807 -38.46947 -35.35955 -33.48140 -31.90977 -29.92557 -29.27297 -26.81723 -24.97543 -23.61000 -22.48044 -22.12655 -20.13446 -19.37458 -17.13464 -16.42515 -15.71512 -15.29775 -15.12878 -14.96714 -14.46071 -14.12548 -13.88523 -13.68803 -13.25208 -13.19297 -12.61117 -11.83848 -11.66170 -11.39209 -11.31201 -11.03584 -10.91490 -10.84284 -10.53192 -10.37096 -10.30128 -10.17448 -9.69497 -9.49635 -9.07484 -8.79137 -8.30210 -7.42043 -6.49924 -4.22764 3.37163 3.38979 3.53700 4.12409 4.38534 4.50747 4.67126 4.87296 4.94959 5.13677 5.25168 5.28818 5.47158 5.54679 5.69964 5.75026 5.80130 5.83327 5.87244 6.00980 6.09532 6.14071 6.20765 6.26882 6.37843 6.41442 6.53281 6.67793 6.87920 7.03514 7.10990 7.54815 7.85927 7.94228 8.24370 8.46104 8.73745 9.50687 10.87535 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.018186 B = 0.009382 C = 0.006743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.293552 B = 2983.579991 C = 4151.564912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.022 3.978 3 Si 1.074 2.926 4 H -0.287 1.287 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.588 4.588 8 H 0.060 0.940 9 C 0.170 3.830 10 H 0.014 0.986 11 C 0.072 3.928 12 O -0.405 6.405 13 C 0.070 3.930 14 C 0.011 3.989 15 N -0.529 5.529 16 C 0.084 3.916 17 C -0.124 4.124 18 H 0.080 0.920 19 C -0.152 4.152 20 C 0.050 3.950 21 O -0.389 6.389 22 C 0.064 3.936 23 H 0.271 0.729 24 H 0.087 0.913 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.028 0.972 30 H 0.089 0.911 31 H 0.024 0.976 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.054 -7.502 5.846 11.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.184 4.184 3 Si 0.902 3.098 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.627 4.627 8 H 0.078 0.922 9 C 0.063 3.937 10 H 0.031 0.969 11 C -0.004 4.004 12 O -0.325 6.325 13 C -0.008 4.008 14 C -0.118 4.118 15 N -0.255 5.255 16 C -0.044 4.044 17 C -0.143 4.143 18 H 0.098 0.902 19 C -0.191 4.191 20 C -0.027 4.027 21 O -0.308 6.308 22 C -0.012 4.012 23 H 0.083 0.917 24 H 0.105 0.895 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.107 0.893 31 H 0.042 0.958 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.237 -6.127 5.413 10.283 hybrid contribution -0.538 -1.271 0.735 1.564 sum 5.698 -7.398 6.148 11.181 Atomic orbital electron populations 1.70762 1.06916 1.31189 1.45385 1.25904 0.96417 1.02762 0.93275 0.83471 0.74593 0.74664 0.77091 1.21287 1.21331 1.21235 1.21796 0.95501 0.90222 1.55191 0.92164 1.20051 0.91988 0.90776 0.90862 0.96862 1.23127 0.96334 0.81936 0.99025 1.87870 1.43400 1.23253 1.77945 1.22447 0.94979 0.91424 0.91901 1.22837 0.97079 0.94358 0.97548 1.62384 1.41619 1.02894 1.18571 1.21822 0.97646 0.96390 0.88523 1.22908 0.97451 0.99928 0.94015 0.90180 1.22964 0.96321 1.02172 0.97610 1.23079 0.95118 0.95609 0.88942 1.88812 1.63244 1.59473 1.19303 1.23523 0.88014 0.99654 0.90011 0.91722 0.89517 0.93736 0.93296 0.90055 0.90879 0.95411 0.89281 0.95758 0.90297 0.90938 0.92695 0.90492 0.88943 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.25 13.62 55.43 0.75 -25.50 16 2 C 0.02 0.60 5.45 -17.82 -0.10 0.50 16 3 Si 1.07 24.20 29.91 -169.99 -5.08 19.11 16 4 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.59 -15.47 7.08 -34.44 -0.24 -15.72 16 8 H 0.06 1.61 7.78 -52.49 -0.41 1.21 16 9 C 0.17 4.14 1.70 -68.76 -0.12 4.02 16 10 H 0.01 0.37 6.67 -51.93 -0.35 0.03 16 11 C 0.07 1.68 6.28 37.21 0.23 1.92 16 12 O -0.41 -8.77 10.82 -35.23 -0.38 -9.15 16 13 C 0.07 1.24 7.01 37.21 0.26 1.50 16 14 C 0.01 0.19 5.18 -3.71 -0.02 0.17 16 15 N -0.53 -10.93 4.50 -227.72 -1.02 -11.95 16 16 C 0.08 1.60 4.06 -3.82 -0.02 1.59 16 17 C -0.12 -1.89 2.68 -88.61 -0.24 -2.13 16 18 H 0.08 1.19 6.07 -51.93 -0.32 0.88 16 19 C -0.15 -1.98 6.60 -25.21 -0.17 -2.15 16 20 C 0.05 0.62 7.70 37.73 0.29 0.91 16 21 O -0.39 -6.00 11.52 -35.23 -0.41 -6.40 16 22 C 0.06 0.99 7.05 38.21 0.27 1.26 16 23 H 0.27 7.93 6.67 -40.82 -0.27 7.65 16 24 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 25 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.07 1.13 5.96 -51.93 -0.31 0.82 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.09 1.84 7.05 -51.93 -0.37 1.48 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 1.03 7.86 -51.93 -0.41 0.62 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.07 1.06 7.99 -51.92 -0.41 0.65 16 LS Contribution 289.95 15.07 4.37 4.37 Total: -1.00 -28.88 289.95 -7.48 -36.36 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.86 Total: 1.30 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 0.16 Total: -8.14 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.27 Total: -37.45 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.79 Total: -15.56 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -5.08 Total: 19.11 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.88 -7.48 -36.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260149848.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.693 kcal (2) G-P(sol) polarization free energy of solvation -28.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds