Wall clock time and date at job start Mon Mar 30 2020 03:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00042 * 2 1 4 4 H 1.48503 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47472 * 59.98937 * 3 2 1 6 6 H 1.48503 * 109.46963 * 299.99192 * 3 2 1 7 7 C 1.37877 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99376 * 173.13582 * 7 2 1 9 9 C 1.50696 * 120.00327 * 353.14127 * 7 2 1 10 10 H 1.09002 * 109.50342 * 331.52904 * 9 7 2 11 11 C 1.53097 * 109.50829 * 91.61442 * 9 7 2 12 12 O 1.43021 * 109.25581 * 176.73674 * 11 9 7 13 13 C 1.43009 * 113.77954 * 301.39999 * 12 11 9 14 14 C 1.53101 * 109.25837 * 58.64452 * 13 12 11 15 15 N 1.47011 * 109.50937 * 211.44397 * 9 7 2 16 16 C 1.46904 * 110.99835 * 57.66975 * 15 9 7 17 17 C 1.53004 * 109.46957 * 176.39804 * 16 15 9 18 18 H 1.09007 * 110.80082 * 304.95501 * 17 16 15 19 19 C 1.54801 * 110.90596 * 181.32646 * 17 16 15 20 20 C 1.54104 * 104.18715 * 220.91717 * 19 17 16 21 21 O 1.43742 * 107.29469 * 357.97383 * 20 19 17 22 22 C 1.44377 * 106.97497 * 26.50883 * 21 20 19 23 23 H 0.97003 * 119.99993 * 183.77908 * 1 2 3 24 24 H 1.09000 * 109.50806 * 296.71999 * 11 9 7 25 25 H 1.09000 * 109.50561 * 56.85010 * 11 9 7 26 26 H 1.08996 * 109.50866 * 298.71157 * 13 12 11 27 27 H 1.08999 * 109.51207 * 178.57852 * 13 12 11 28 28 H 1.09002 * 109.50999 * 183.21754 * 14 13 12 29 29 H 1.09000 * 109.54117 * 63.10625 * 14 13 12 30 30 H 1.09000 * 109.47019 * 296.39213 * 16 15 9 31 31 H 1.09000 * 109.47060 * 56.39795 * 16 15 9 32 32 H 1.09002 * 110.49086 * 339.59467 * 19 17 16 33 33 H 1.09007 * 110.49319 * 102.24742 * 19 17 16 34 34 H 1.09001 * 109.87540 * 117.39603 * 20 19 17 35 35 H 1.09002 * 109.88077 * 238.39350 * 20 19 17 36 36 H 1.09002 * 110.62042 * 201.43848 * 22 21 20 37 37 H 1.09008 * 110.61883 * 78.43889 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8903 2.3966 1.2123 6 1 1.8905 2.3963 -1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0787 -1.1974 -0.1113 9 6 1.2592 -2.4944 0.1570 10 1 0.3504 -2.3258 0.7348 11 6 0.8922 -3.0428 -1.2245 12 8 0.2528 -4.3131 -1.0732 13 6 1.0548 -5.2855 -0.3977 14 6 1.4225 -4.7593 0.9923 15 7 2.1113 -3.4678 0.8553 16 6 2.5325 -2.9541 2.1656 17 6 3.3407 -4.0271 2.8982 18 1 2.7742 -4.9555 2.9717 19 6 3.7740 -3.5317 4.2993 20 6 5.2227 -4.0359 4.4468 21 8 5.5380 -4.7831 3.2600 22 6 4.7047 -4.2642 2.2014 23 1 -0.4850 -0.8382 0.0554 24 1 0.2138 -2.3501 -1.7226 25 1 1.7966 -3.1601 -1.8215 26 1 1.9643 -5.4682 -0.9699 27 1 0.4938 -6.2147 -0.2983 28 1 2.0809 -5.4721 1.4889 29 1 0.5164 -4.6276 1.5837 30 1 3.1494 -2.0663 2.0265 31 1 1.6524 -2.6965 2.7548 32 1 3.7422 -2.4431 4.3458 33 1 3.1385 -3.9662 5.0711 34 1 5.9019 -3.1888 4.5429 35 1 5.3044 -4.6775 5.3242 36 1 4.6040 -4.9950 1.3989 37 1 5.1087 -3.3265 1.8195 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260149848.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:23 Heat of formation + Delta-G solvation = -112.754286 kcal Electronic energy + Delta-G solvation = -18530.702597 eV Core-core repulsion = 15692.873284 eV Total energy + Delta-G solvation = -2837.829313 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.92330 -39.93575 -36.98736 -35.39774 -33.27465 -31.69271 -30.46107 -28.38049 -26.93466 -25.10053 -24.22171 -23.28090 -21.65133 -20.90873 -19.04840 -17.74257 -17.13999 -16.87986 -16.62717 -16.42384 -16.01893 -15.72976 -15.59074 -15.25479 -14.78559 -14.57957 -13.90312 -13.53691 -13.42464 -13.11177 -12.70574 -12.53455 -12.37672 -12.20971 -12.04206 -11.92729 -11.88858 -11.73818 -11.24111 -10.83767 -10.81139 -10.63350 -10.25732 -9.17901 -8.66281 -6.39605 1.52891 1.59829 1.77318 2.51692 2.85661 2.98879 3.10677 3.20441 3.65810 3.78416 3.96163 4.06112 4.18343 4.24071 4.26211 4.35605 4.42541 4.49928 4.54121 4.67750 4.71939 4.80213 4.83127 4.85120 4.91599 4.95498 4.99016 5.09951 5.17500 5.31125 5.71527 5.90373 5.94613 6.25893 6.32303 6.40549 6.64322 7.41475 8.70059 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.018186 B = 0.009382 C = 0.006743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.293552 B = 2983.579991 C = 4151.564912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.026 4.026 3 Si 1.118 2.882 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.587 4.587 8 H 0.054 0.946 9 C 0.174 3.826 10 H -0.025 1.025 11 C 0.085 3.915 12 O -0.418 6.418 13 C 0.062 3.938 14 C 0.011 3.989 15 N -0.531 5.531 16 C 0.091 3.909 17 C -0.116 4.116 18 H 0.091 0.909 19 C -0.149 4.149 20 C 0.047 3.953 21 O -0.401 6.401 22 C 0.068 3.932 23 H 0.256 0.744 24 H 0.063 0.937 25 H 0.047 0.953 26 H 0.060 0.940 27 H 0.120 0.880 28 H 0.107 0.893 29 H 0.016 0.984 30 H 0.066 0.934 31 H 0.005 0.995 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.507 -8.729 6.761 13.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.225 4.225 3 Si 0.940 3.060 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.625 4.625 8 H 0.072 0.928 9 C 0.066 3.934 10 H -0.008 1.008 11 C 0.008 3.992 12 O -0.338 6.338 13 C -0.014 4.014 14 C -0.117 4.117 15 N -0.256 5.256 16 C -0.037 4.037 17 C -0.135 4.135 18 H 0.109 0.891 19 C -0.187 4.187 20 C -0.030 4.030 21 O -0.320 6.320 22 C -0.008 4.008 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.138 0.862 28 H 0.125 0.875 29 H 0.035 0.965 30 H 0.085 0.915 31 H 0.023 0.977 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.705 -7.388 6.338 12.414 hybrid contribution -0.974 -0.998 0.494 1.480 sum 6.730 -8.386 6.832 12.739 Atomic orbital electron populations 1.70887 1.07940 1.30276 1.47995 1.27243 0.96386 1.06314 0.92547 0.82915 0.74449 0.71288 0.77374 1.19363 1.20729 1.20683 1.21979 0.95151 0.91326 1.54090 0.92763 1.19866 0.90737 0.91429 0.91370 1.00765 1.22752 0.95729 0.82718 0.98005 1.87844 1.44375 1.22946 1.78621 1.22819 0.95830 0.91563 0.91214 1.22955 0.97144 0.93414 0.98175 1.62323 1.40764 1.03162 1.19345 1.21741 0.96914 0.97174 0.87898 1.22798 0.96865 0.98861 0.94936 0.89108 1.22973 0.97119 1.02090 0.96548 1.23271 0.94644 0.96328 0.88747 1.88803 1.63309 1.59932 1.20002 1.23409 0.87889 0.99165 0.90322 0.93335 0.91869 0.93502 0.92140 0.86250 0.87473 0.96531 0.91508 0.97720 0.90740 0.89021 0.91885 0.88010 0.88663 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.81 13.62 21.45 0.29 -55.52 16 2 C -0.03 -1.42 5.45 84.65 0.46 -0.96 16 3 Si 1.12 48.88 29.91 68.60 2.05 50.93 16 4 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 6 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.59 -31.53 7.08 25.60 0.18 -31.35 16 8 H 0.05 2.94 7.78 -2.91 -0.02 2.91 16 9 C 0.17 8.68 1.70 44.18 0.08 8.75 16 10 H -0.03 -1.45 6.67 -2.39 -0.02 -1.47 16 11 C 0.09 4.04 6.28 72.01 0.45 4.49 16 12 O -0.42 -17.91 10.82 -148.98 -1.61 -19.52 16 13 C 0.06 2.05 7.01 72.02 0.50 2.56 16 14 C 0.01 0.39 5.18 86.32 0.45 0.83 16 15 N -0.53 -21.78 4.50 -874.38 -3.94 -25.72 16 16 C 0.09 3.45 4.06 86.30 0.35 3.80 16 17 C -0.12 -3.32 2.68 -9.49 -0.03 -3.34 16 18 H 0.09 2.43 6.07 -2.38 -0.01 2.42 16 19 C -0.15 -3.53 6.60 31.58 0.21 -3.32 16 20 C 0.05 1.03 7.70 72.36 0.56 1.59 16 21 O -0.40 -11.31 11.52 -148.98 -1.72 -13.03 16 22 C 0.07 1.98 7.05 72.67 0.51 2.50 16 23 H 0.26 15.74 6.67 -92.71 -0.62 15.12 16 24 H 0.06 3.25 8.14 -2.39 -0.02 3.23 16 25 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 28 H 0.11 2.96 5.96 -2.39 -0.01 2.94 16 29 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 2.81 7.05 -2.39 -0.02 2.79 16 31 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.07 1.83 7.86 -2.39 -0.02 1.81 16 33 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 35 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.10 2.68 8.14 -2.39 -0.02 2.67 16 37 H 0.05 1.65 7.99 -2.38 -0.02 1.63 16 Total: -1.00 -63.30 289.95 -0.01 -63.31 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 1.19 Total: 13.99 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 3.72 Total: -14.45 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -3.64 Total: -81.24 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -3.33 Total: -32.55 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 2.05 Total: 50.93 kcal Total: -63.30 -0.01 -63.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260149848.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.440 kcal (2) G-P(sol) polarization free energy of solvation -63.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds