Wall clock time and date at job start Mon Mar 30 2020 03:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99637 * 2 1 4 4 H 1.48505 * 109.46754 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47277 * 299.99688 * 3 2 1 6 6 H 1.48500 * 109.47310 * 60.00126 * 3 2 1 7 7 C 1.37869 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00299 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99830 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47159 * 179.97438 * 9 7 2 11 11 C 1.47962 * 110.99960 * 169.99757 * 10 9 7 12 12 C 1.53939 * 86.17995 * 222.42316 * 11 10 9 13 13 O 1.42901 * 113.73265 * 269.25725 * 12 11 10 14 14 C 1.42904 * 114.00234 * 208.10175 * 13 12 11 15 15 H 1.08998 * 109.47496 * 55.01901 * 14 13 12 16 16 C 1.53089 * 109.48309 * 175.05744 * 14 13 12 17 17 C 1.53165 * 109.16414 * 177.59160 * 16 14 13 18 18 C 1.53185 * 109.03815 * 303.01938 * 17 16 14 19 19 C 1.53092 * 109.16271 * 56.98092 * 18 17 16 20 20 O 1.42900 * 109.47819 * 295.00366 * 14 13 12 21 21 C 1.47963 * 110.99442 * 70.64116 * 10 9 7 22 22 H 0.97004 * 120.00636 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47462 * 60.00042 * 9 7 2 24 24 H 1.09000 * 109.47361 * 299.99539 * 9 7 2 25 25 H 1.08991 * 113.75516 * 108.10700 * 11 10 9 26 26 H 1.08998 * 113.86153 * 336.75073 * 11 10 9 27 27 H 1.09002 * 113.73278 * 138.08129 * 12 11 10 28 28 H 1.09003 * 109.52153 * 297.50033 * 16 14 13 29 29 H 1.09010 * 109.52078 * 57.68387 * 16 14 13 30 30 H 1.09006 * 109.54888 * 183.15250 * 17 16 14 31 31 H 1.08999 * 109.62129 * 62.93141 * 17 16 14 32 32 H 1.09000 * 109.51960 * 297.07896 * 18 17 16 33 33 H 1.09000 * 109.57435 * 176.91829 * 18 17 16 34 34 H 1.08997 * 109.48240 * 182.41221 * 19 18 17 35 35 H 1.08999 * 109.47860 * 62.37086 * 19 18 17 36 36 H 1.09003 * 113.76284 * 23.26689 * 21 10 9 37 37 H 1.09007 * 113.75909 * 251.89873 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5162 -4.9027 0.2405 12 6 2.6928 -5.2411 1.1737 13 8 3.7699 -5.9153 0.5199 14 6 4.5282 -6.7690 1.3792 15 1 3.8608 -7.4800 1.8662 16 6 5.5699 -7.5289 0.5540 17 6 6.4177 -8.3958 1.4897 18 6 7.0597 -7.5012 2.5547 19 6 5.9604 -6.7424 3.3027 20 8 5.1902 -5.9809 2.3705 21 6 2.8982 -3.7210 1.3038 22 1 -0.4851 0.8400 0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 1.4577 -5.5405 -0.6414 26 1 0.5614 -4.8020 0.7565 27 1 2.3908 -5.7242 2.1029 28 1 5.0652 -8.1644 -0.1737 29 1 6.2123 -6.8178 0.0344 30 1 7.1976 -8.8968 0.9161 31 1 5.7848 -9.1405 1.9723 32 1 7.7321 -6.7897 2.0756 33 1 7.6211 -8.1162 3.2581 34 1 6.4137 -6.0721 4.0330 35 1 5.3119 -7.4533 3.8148 36 1 2.3479 -3.2728 2.1311 37 1 3.9438 -3.4148 1.2716 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260156266.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:16 Heat of formation + Delta-G solvation = -87.373557 kcal Electronic energy + Delta-G solvation = -17683.465338 eV Core-core repulsion = 14846.736616 eV Total energy + Delta-G solvation = -2836.728722 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.13547 -40.07547 -37.17525 -34.95778 -34.63132 -31.59895 -30.56759 -27.33542 -26.78145 -25.61930 -24.20409 -23.56326 -21.34906 -20.70901 -18.68388 -18.36521 -17.49086 -17.11474 -16.79543 -16.06933 -15.92580 -15.54857 -15.22182 -15.05659 -14.28585 -14.12853 -14.04047 -13.70982 -13.61531 -13.19399 -12.96376 -12.74458 -12.41930 -12.34048 -12.12938 -12.05664 -11.89864 -11.41971 -11.36907 -11.23179 -10.73021 -10.66814 -10.41690 -9.47246 -8.25587 -6.36035 1.37332 1.38415 1.52752 2.25708 2.37899 2.92388 3.06937 3.34360 3.54763 3.81237 3.88496 3.94855 4.02987 4.03880 4.12419 4.39871 4.48967 4.52253 4.62686 4.69705 4.76443 4.82040 4.86748 4.89954 5.00277 5.04322 5.09597 5.11669 5.18116 5.37048 5.52100 5.77685 6.09064 6.15158 6.36498 6.44424 6.78890 7.33877 8.86428 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.038891 B = 0.004805 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.795079 B = 5825.809908 C = 6228.403160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.971 3.029 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.530 4.530 8 H 0.052 0.948 9 C 0.173 3.827 10 N -0.495 5.495 11 C -0.001 4.001 12 C 0.085 3.915 13 O -0.355 6.355 14 C 0.245 3.755 15 H 0.071 0.929 16 C -0.140 4.140 17 C -0.114 4.114 18 C -0.157 4.157 19 C 0.061 3.939 20 O -0.432 6.432 21 C 0.007 3.993 22 H 0.267 0.733 23 H 0.003 0.997 24 H -0.020 1.020 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.512 -18.830 7.520 23.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.795 3.205 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.071 0.929 9 C 0.046 3.954 10 N -0.219 5.219 11 C -0.130 4.130 12 C 0.027 3.973 13 O -0.274 6.274 14 C 0.150 3.850 15 H 0.088 0.912 16 C -0.178 4.178 17 C -0.151 4.151 18 C -0.195 4.195 19 C -0.015 4.015 20 O -0.354 6.354 21 C -0.122 4.122 22 H 0.075 0.925 23 H 0.021 0.979 24 H -0.003 1.003 25 H 0.113 0.887 26 H 0.100 0.900 27 H 0.115 0.885 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.755 -18.391 6.707 22.834 hybrid contribution -0.573 1.027 0.661 1.349 sum 11.182 -17.363 7.369 21.928 Atomic orbital electron populations 1.70074 1.07603 1.28008 1.51486 1.25905 0.95824 1.03175 0.94468 0.85319 0.78684 0.78417 0.78108 1.19312 1.19985 1.19767 1.21407 0.93254 0.91517 1.50681 0.92929 1.19909 0.91099 0.90305 0.94060 1.68526 1.20768 1.02074 1.30492 1.24236 0.95766 0.92995 1.00032 1.23343 0.87011 0.91604 0.95331 1.88074 1.43093 1.61774 1.34440 1.23372 0.90101 0.86198 0.85319 0.91215 1.22056 0.97453 0.99048 0.99215 1.21597 0.99488 0.97323 0.96687 1.22241 0.98446 0.99511 0.99278 1.22771 0.92427 0.95738 0.90549 1.87883 1.66511 1.37383 1.43633 1.24078 0.99994 0.96135 0.92027 0.92463 0.97919 1.00261 0.88741 0.90017 0.88523 0.89312 0.92034 0.89331 0.90000 0.92074 0.88074 0.88042 0.91512 0.91750 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.65 13.28 21.44 0.28 -57.36 16 2 C 0.00 0.27 5.46 84.65 0.46 0.73 16 3 Si 0.97 46.24 29.54 68.60 2.03 48.27 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.53 -32.30 8.84 25.60 0.23 -32.07 16 8 H 0.05 3.23 7.80 -2.91 -0.02 3.21 16 9 C 0.17 9.90 4.58 85.56 0.39 10.29 16 10 N -0.50 -24.16 6.25 -916.28 -5.73 -29.89 16 11 C 0.00 -0.05 7.80 86.41 0.67 0.62 16 12 C 0.09 2.96 4.18 31.24 0.13 3.10 16 13 O -0.36 -12.21 10.29 -126.21 -1.30 -13.51 16 14 C 0.25 6.32 3.08 72.01 0.22 6.54 16 15 H 0.07 1.48 8.08 -2.39 -0.02 1.46 16 16 C -0.14 -2.89 5.79 30.68 0.18 -2.71 16 17 C -0.11 -1.54 6.03 30.71 0.19 -1.35 16 18 C -0.16 -2.20 6.14 30.69 0.19 -2.01 16 19 C 0.06 1.07 6.84 72.01 0.49 1.57 16 20 O -0.43 -11.97 10.30 -126.21 -1.30 -13.27 16 21 C 0.01 0.30 7.30 86.41 0.63 0.94 16 22 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 23 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 24 H -0.02 -1.20 7.69 -2.39 -0.02 -1.22 16 25 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 26 H 0.08 2.95 7.80 -2.39 -0.02 2.93 16 27 H 0.10 2.76 7.85 -2.39 -0.02 2.74 16 28 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 2.82 7.78 -2.39 -0.02 2.81 16 37 H 0.07 3.10 8.14 -2.38 -0.02 3.08 16 Total: -1.00 -72.04 301.89 -1.22 -73.26 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 1.02 Total: 6.86 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 3.78 Total: -14.36 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -5.45 Total: -87.25 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -2.60 Total: -26.78 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -72.04 -1.22 -73.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260156266.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.117 kcal (2) G-P(sol) polarization free energy of solvation -72.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds