Wall clock time and date at job start Mon Mar 30 2020 03:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99668 * 2 1 4 4 H 1.48502 * 109.46885 * 240.00052 * 3 2 1 5 5 H 1.48494 * 109.47373 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47070 * 120.00077 * 3 2 1 7 7 C 1.37872 * 120.00376 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00129 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99829 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47028 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.28444 * 307.11764 * 10 9 7 12 12 C 1.54456 * 110.31971 * 184.99537 * 10 9 7 13 13 O 1.44833 * 102.90119 * 219.20317 * 12 10 9 14 14 C 1.44389 * 103.23133 * 36.61109 * 13 12 10 15 15 H 1.08999 * 110.10756 * 80.01704 * 14 13 12 16 16 C 1.53001 * 110.11228 * 201.60150 * 14 13 12 17 17 H 1.08999 * 109.45306 * 177.68347 * 16 14 13 18 18 C 1.53044 * 109.46137 * 297.65189 * 16 14 13 19 19 C 1.53121 * 109.27467 * 179.19741 * 18 16 14 20 20 C 1.53118 * 109.15998 * 302.34543 * 19 18 16 21 21 C 1.53034 * 109.28068 * 57.65604 * 20 19 18 22 22 N 1.46847 * 109.46201 * 57.70628 * 16 14 13 23 23 O 1.43782 * 106.22624 * 320.81222 * 14 13 12 24 24 H 0.96998 * 120.00467 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47300 * 60.00197 * 9 7 2 26 26 H 1.09005 * 109.47262 * 299.99981 * 9 7 2 27 27 H 1.09004 * 110.72214 * 100.84730 * 12 10 9 28 28 H 1.09001 * 110.88209 * 337.63065 * 12 10 9 29 29 H 1.08996 * 109.50067 * 59.25556 * 18 16 14 30 30 H 1.08999 * 109.53710 * 299.15841 * 18 16 14 31 31 H 1.09004 * 109.51709 * 182.44592 * 19 18 16 32 32 H 1.08992 * 109.57642 * 62.28071 * 19 18 16 33 33 H 1.09001 * 109.50624 * 297.71626 * 20 19 18 34 34 H 1.09002 * 109.53418 * 177.61821 * 20 19 18 35 35 H 1.09000 * 109.46341 * 180.80474 * 21 20 19 36 36 H 1.09003 * 109.45147 * 60.83100 * 21 20 19 37 37 H 1.00901 * 110.99839 * 54.14718 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9599 -3.5482 -0.8158 12 6 1.4973 -5.0074 -0.1267 13 8 2.2360 -5.8733 0.7690 14 6 2.5918 -4.9955 1.8587 15 1 1.7448 -4.8741 2.5340 16 6 3.7933 -5.5607 2.6188 17 1 4.0783 -4.8701 3.4126 18 6 3.4200 -6.9134 3.2295 19 6 4.6313 -7.4843 3.9720 20 6 5.8052 -7.6098 2.9969 21 6 6.1093 -6.2369 2.3930 22 7 4.9201 -5.7342 1.6933 23 8 2.9334 -3.7326 1.2622 24 1 -0.4851 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 1.5441 -5.3803 -1.1498 28 1 0.4619 -4.9082 0.1993 29 1 3.1217 -7.6003 2.4375 30 1 2.5935 -6.7824 3.9280 31 1 4.3832 -8.4676 4.3718 32 1 4.9063 -6.8176 4.7892 33 1 5.5444 -8.3076 2.2012 34 1 6.6833 -7.9760 3.5288 35 1 6.9354 -6.3255 1.6874 36 1 6.3833 -5.5433 3.1879 37 1 5.1237 -4.8743 1.2062 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260180008.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:52 Heat of formation + Delta-G solvation = -107.074788 kcal Electronic energy + Delta-G solvation = -18079.997252 eV Core-core repulsion = 15242.414220 eV Total energy + Delta-G solvation = -2837.583031 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.97465 -38.05148 -34.45390 -33.22666 -32.11028 -31.63979 -30.08548 -26.74938 -25.10559 -23.34519 -23.07509 -21.44098 -20.46502 -19.52217 -16.95321 -16.42421 -16.21158 -15.65965 -15.33134 -14.58385 -14.23551 -14.04990 -13.68162 -13.35901 -13.19790 -13.07142 -12.64736 -12.20811 -11.98402 -11.74676 -11.45077 -11.15050 -11.12884 -10.78402 -10.69461 -10.53310 -10.46283 -10.32914 -9.82402 -9.53384 -9.13041 -8.73897 -8.38916 -8.23534 -6.01406 -4.02415 3.34430 3.38189 3.41639 4.11656 4.26544 4.34469 4.46221 4.82075 4.90073 5.02318 5.28397 5.33142 5.35412 5.40508 5.47746 5.53563 5.61210 5.65244 5.73579 5.83860 5.89095 5.93412 5.96564 6.14809 6.17902 6.25105 6.43111 6.47309 6.81114 7.19846 7.36433 7.57675 7.60593 7.81631 7.96002 8.37625 9.01722 9.60761 11.10231 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036335 B = 0.005563 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.422367 B = 5032.471906 C = 5436.163023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.510 4.510 8 H 0.057 0.943 9 C 0.014 3.986 10 C 0.064 3.936 11 H 0.080 0.920 12 C 0.015 3.985 13 O -0.368 6.368 14 C 0.232 3.768 15 H 0.068 0.932 16 C 0.094 3.906 17 H 0.052 0.948 18 C -0.110 4.110 19 C -0.119 4.119 20 C -0.117 4.117 21 C 0.058 3.942 22 N -0.673 5.673 23 O -0.371 6.371 24 H 0.261 0.739 25 H 0.031 0.969 26 H 0.023 0.977 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.026 0.974 37 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.689 -13.674 5.371 16.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.548 4.548 8 H 0.076 0.924 9 C -0.023 4.023 10 C 0.007 3.993 11 H 0.098 0.902 12 C -0.062 4.062 13 O -0.288 6.288 14 C 0.136 3.864 15 H 0.085 0.915 16 C -0.016 4.016 17 H 0.069 0.931 18 C -0.148 4.148 19 C -0.157 4.157 20 C -0.155 4.155 21 C -0.072 4.072 22 N -0.307 5.307 23 O -0.292 6.292 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.041 0.959 27 H 0.115 0.885 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.044 0.956 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.520 -14.241 5.230 16.933 hybrid contribution 0.443 1.904 0.454 2.007 sum 7.963 -12.337 5.683 15.745 Atomic orbital electron populations 1.69940 1.06045 1.26783 1.51067 1.24998 0.94848 0.99275 0.95366 0.86616 0.79532 0.82971 0.78647 1.20224 1.21337 1.20273 1.21071 0.93108 0.90462 1.50172 0.92441 1.19455 0.93385 0.91524 0.97953 1.23815 0.94933 0.95325 0.85179 0.90196 1.24409 0.96356 0.90088 0.95345 1.89397 1.73140 1.32904 1.33393 1.24233 0.94395 0.78445 0.89334 0.91493 1.21610 0.90710 0.96215 0.93098 0.93051 1.21529 0.97384 0.96207 0.99644 1.21558 0.95576 1.00744 0.97799 1.21590 0.97756 0.97387 0.98777 1.21903 0.92748 0.95719 0.96790 1.60161 1.05092 1.36726 1.28703 1.88942 1.70743 1.34919 1.34550 0.92934 0.95125 0.95899 0.88530 0.91270 0.90203 0.91720 0.91879 0.92441 0.91130 0.92043 0.90966 0.95619 0.82738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.51 -14.48 9.00 -34.44 -0.31 -14.79 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.35 4.59 -27.88 -0.13 0.22 16 10 C 0.06 1.36 3.65 -25.97 -0.09 1.26 16 11 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 12 C 0.01 0.26 7.35 37.92 0.28 0.54 16 13 O -0.37 -6.58 10.82 -59.28 -0.64 -7.22 16 14 C 0.23 4.10 3.63 37.16 0.14 4.24 16 15 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 16 C 0.09 1.41 2.59 -67.72 -0.18 1.23 16 17 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 18 C -0.11 -1.39 5.26 -26.65 -0.14 -1.53 16 19 C -0.12 -1.26 6.00 -26.61 -0.16 -1.42 16 20 C -0.12 -1.23 6.09 -26.65 -0.16 -1.39 16 21 C 0.06 0.69 6.55 -3.83 -0.03 0.66 16 22 N -0.67 -9.89 6.35 -106.76 -0.68 -10.57 16 23 O -0.37 -7.83 10.14 -59.28 -0.60 -8.43 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.07 1.20 7.87 -51.93 -0.41 0.79 16 29 H 0.08 1.11 7.76 -51.93 -0.40 0.71 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.35 5.56 8.16 -39.29 -0.32 5.24 16 LS Contribution 297.33 15.07 4.48 4.48 Total: -1.00 -30.43 297.33 -8.77 -39.20 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.17 Total: 1.28 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -0.88 Total: -9.46 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.06 Total: -36.70 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -1.24 Total: -15.66 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.43 -8.77 -39.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260180008.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.876 kcal (2) G-P(sol) polarization free energy of solvation -30.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds