Wall clock time and date at job start Mon Mar 30 2020 03:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99668 * 2 1 4 4 H 1.48502 * 109.46885 * 240.00052 * 3 2 1 5 5 H 1.48494 * 109.47373 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47070 * 120.00077 * 3 2 1 7 7 C 1.37872 * 120.00376 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00129 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99829 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47028 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.28444 * 307.11764 * 10 9 7 12 12 C 1.54456 * 110.31971 * 184.99537 * 10 9 7 13 13 O 1.44833 * 102.90119 * 219.20317 * 12 10 9 14 14 C 1.44389 * 103.23133 * 36.61109 * 13 12 10 15 15 H 1.08999 * 110.10756 * 80.01704 * 14 13 12 16 16 C 1.53001 * 110.11228 * 201.60150 * 14 13 12 17 17 H 1.08999 * 109.45306 * 177.68347 * 16 14 13 18 18 C 1.53044 * 109.46137 * 297.65189 * 16 14 13 19 19 C 1.53121 * 109.27467 * 179.19741 * 18 16 14 20 20 C 1.53118 * 109.15998 * 302.34543 * 19 18 16 21 21 C 1.53034 * 109.28068 * 57.65604 * 20 19 18 22 22 N 1.46847 * 109.46201 * 57.70628 * 16 14 13 23 23 O 1.43782 * 106.22624 * 320.81222 * 14 13 12 24 24 H 0.96998 * 120.00467 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47300 * 60.00197 * 9 7 2 26 26 H 1.09005 * 109.47262 * 299.99981 * 9 7 2 27 27 H 1.09004 * 110.72214 * 100.84730 * 12 10 9 28 28 H 1.09001 * 110.88209 * 337.63065 * 12 10 9 29 29 H 1.08996 * 109.50067 * 59.25556 * 18 16 14 30 30 H 1.08999 * 109.53710 * 299.15841 * 18 16 14 31 31 H 1.09004 * 109.51709 * 182.44592 * 19 18 16 32 32 H 1.08992 * 109.57642 * 62.28071 * 19 18 16 33 33 H 1.09001 * 109.50624 * 297.71626 * 20 19 18 34 34 H 1.09002 * 109.53418 * 177.61821 * 20 19 18 35 35 H 1.09000 * 109.46341 * 180.80474 * 21 20 19 36 36 H 1.09003 * 109.45147 * 60.83100 * 21 20 19 37 37 H 1.00901 * 110.99839 * 54.14718 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9599 -3.5482 -0.8158 12 6 1.4973 -5.0074 -0.1267 13 8 2.2360 -5.8733 0.7690 14 6 2.5918 -4.9955 1.8587 15 1 1.7448 -4.8741 2.5340 16 6 3.7933 -5.5607 2.6188 17 1 4.0783 -4.8701 3.4126 18 6 3.4200 -6.9134 3.2295 19 6 4.6313 -7.4843 3.9720 20 6 5.8052 -7.6098 2.9969 21 6 6.1093 -6.2369 2.3930 22 7 4.9201 -5.7342 1.6933 23 8 2.9334 -3.7326 1.2622 24 1 -0.4851 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 1.5441 -5.3803 -1.1498 28 1 0.4619 -4.9082 0.1993 29 1 3.1217 -7.6003 2.4375 30 1 2.5935 -6.7824 3.9280 31 1 4.3832 -8.4676 4.3718 32 1 4.9063 -6.8176 4.7892 33 1 5.5444 -8.3076 2.2012 34 1 6.6833 -7.9760 3.5288 35 1 6.9354 -6.3255 1.6874 36 1 6.3833 -5.5433 3.1879 37 1 5.1237 -4.8743 1.2062 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260180008.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:52 Heat of formation + Delta-G solvation = -127.833615 kcal Electronic energy + Delta-G solvation = -18080.897422 eV Core-core repulsion = 15242.414220 eV Total energy + Delta-G solvation = -2838.483202 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.42602 -39.15191 -36.08768 -35.17183 -33.41939 -32.77691 -31.66904 -28.53599 -26.40285 -25.01278 -24.28742 -22.65821 -22.17057 -20.53273 -18.57373 -18.19885 -17.73241 -17.02707 -16.76063 -16.45814 -15.33210 -15.18503 -15.11539 -14.78329 -14.45266 -14.15849 -14.02739 -13.70211 -13.52919 -13.43965 -13.16039 -12.97468 -12.48678 -12.38312 -12.14016 -11.81971 -11.66494 -11.60637 -11.27227 -11.15495 -11.02662 -10.59598 -10.38462 -9.34917 -8.21458 -6.30418 1.39032 1.41791 1.49777 2.40264 2.66989 2.95980 3.13611 3.16886 3.78252 3.83534 3.93807 4.01736 4.06522 4.21459 4.28239 4.33904 4.43545 4.50585 4.61652 4.70009 4.76826 4.83825 4.86107 4.99932 5.09536 5.13582 5.23878 5.27304 5.33506 5.49314 5.54851 5.74547 6.11669 6.14683 6.25382 6.41218 6.81490 7.37226 8.90198 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036335 B = 0.005563 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.422367 B = 5032.471906 C = 5436.163023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.531 4.531 8 H 0.054 0.946 9 C 0.020 3.980 10 C 0.069 3.931 11 H 0.082 0.918 12 C 0.023 3.977 13 O -0.366 6.366 14 C 0.226 3.774 15 H 0.067 0.933 16 C 0.097 3.903 17 H 0.048 0.952 18 C -0.106 4.106 19 C -0.116 4.116 20 C -0.114 4.114 21 C 0.055 3.945 22 N -0.684 5.684 23 O -0.391 6.391 24 H 0.264 0.736 25 H 0.018 0.982 26 H -0.005 1.005 27 H 0.124 0.876 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.027 0.973 37 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.005 -14.410 5.855 17.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.072 0.928 9 C -0.017 4.017 10 C 0.012 3.988 11 H 0.099 0.901 12 C -0.054 4.054 13 O -0.286 6.286 14 C 0.130 3.870 15 H 0.084 0.916 16 C -0.013 4.013 17 H 0.066 0.934 18 C -0.144 4.144 19 C -0.154 4.154 20 C -0.152 4.152 21 C -0.074 4.074 22 N -0.316 5.316 23 O -0.313 6.313 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.013 0.987 27 H 0.142 0.858 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.046 0.954 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.846 -15.004 5.719 18.332 hybrid contribution 0.017 2.114 0.319 2.138 sum 8.863 -12.890 6.038 16.768 Atomic orbital electron populations 1.70057 1.07566 1.27852 1.51781 1.25880 0.95750 1.03062 0.94816 0.85543 0.78328 0.78410 0.79018 1.19033 1.20609 1.19848 1.21440 0.93213 0.92010 1.50227 0.92790 1.19307 0.93734 0.92764 0.95924 1.23574 0.94268 0.95445 0.85522 0.90052 1.24374 0.95855 0.88267 0.96871 1.89398 1.73135 1.32706 1.33391 1.24489 0.95853 0.77446 0.89182 0.91607 1.21618 0.89823 0.97319 0.92588 0.93423 1.21522 0.98861 0.94452 0.99546 1.21565 0.94474 1.01694 0.97634 1.21596 0.98722 0.96204 0.98690 1.22040 0.91917 0.96460 0.97011 1.60225 1.06152 1.36099 1.29141 1.88910 1.70724 1.36991 1.34655 0.92713 0.96342 0.98657 0.85795 0.91083 0.91426 0.90816 0.90011 0.91876 0.91843 0.89694 0.89958 0.95425 0.83907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.46 13.29 21.45 0.28 -56.18 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.96 44.90 29.54 68.60 2.03 46.92 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.53 -30.60 9.00 25.60 0.23 -30.37 16 8 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 9 C 0.02 1.04 4.59 29.85 0.14 1.18 16 10 C 0.07 2.93 3.65 31.09 0.11 3.05 16 11 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 12 C 0.02 0.79 7.35 72.48 0.53 1.33 16 13 O -0.37 -12.78 10.82 -125.99 -1.36 -14.14 16 14 C 0.23 7.95 3.63 71.98 0.26 8.21 16 15 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 16 C 0.10 2.83 2.59 44.94 0.12 2.95 16 17 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 18 C -0.11 -2.51 5.26 30.65 0.16 -2.35 16 19 C -0.12 -2.15 6.00 30.67 0.18 -1.96 16 20 C -0.11 -2.11 6.09 30.65 0.19 -1.92 16 21 C 0.05 1.20 6.55 86.32 0.57 1.76 16 22 N -0.68 -19.47 6.35 -491.67 -3.12 -22.60 16 23 O -0.39 -16.73 10.14 -125.99 -1.28 -18.01 16 24 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 25 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.00 -0.28 8.14 -2.38 -0.02 -0.30 16 27 H 0.12 3.61 8.14 -2.39 -0.02 3.59 16 28 H 0.07 2.44 7.87 -2.39 -0.02 2.42 16 29 H 0.07 1.78 7.76 -2.39 -0.02 1.76 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.34 10.73 8.16 -89.69 -0.73 10.00 16 Total: -1.00 -64.88 297.33 -0.19 -65.07 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.31 Total: 16.45 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: 2.95 Total: -17.52 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -2.84 Total: -78.78 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -2.64 Total: -32.15 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -64.88 -0.19 -65.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260180008.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.759 kcal (2) G-P(sol) polarization free energy of solvation -64.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds