Wall clock time and date at job start Mon Mar 30 2020 03:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00109 * 2 1 4 4 H 1.48497 * 109.47042 * 270.00117 * 3 2 1 5 5 H 1.48497 * 109.46953 * 30.00245 * 3 2 1 6 6 H 1.48493 * 109.46969 * 149.99904 * 3 2 1 7 7 C 1.37880 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00137 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99842 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.46957 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.64807 * 303.28405 * 10 9 7 12 12 C 1.54456 * 110.87995 * 180.02562 * 10 9 7 13 13 O 1.43888 * 105.08287 * 219.77958 * 12 10 9 14 14 C 1.43785 * 107.10429 * 358.28643 * 13 12 10 15 15 H 1.08996 * 110.17135 * 265.88403 * 14 13 12 16 16 C 1.53006 * 110.11161 * 144.26187 * 14 13 12 17 17 H 1.08998 * 109.46289 * 308.24243 * 16 14 13 18 18 C 1.53042 * 109.45784 * 68.20799 * 16 14 13 19 19 C 1.53120 * 109.27488 * 179.19421 * 18 16 14 20 20 C 1.53118 * 109.16353 * 302.34955 * 19 18 16 21 21 C 1.53034 * 109.27810 * 57.64926 * 20 19 18 22 22 N 1.46842 * 109.52699 * 300.82305 * 21 20 19 23 23 O 1.44387 * 106.17008 * 25.09065 * 14 13 12 24 24 H 0.97007 * 119.99930 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47108 * 59.99512 * 9 7 2 26 26 H 1.09001 * 109.46869 * 299.99952 * 9 7 2 27 27 H 1.09005 * 110.31923 * 338.68350 * 12 10 9 28 28 H 1.08999 * 110.31893 * 100.77347 * 12 10 9 29 29 H 1.08999 * 109.50388 * 299.13126 * 18 16 14 30 30 H 1.08991 * 109.50195 * 59.25672 * 18 16 14 31 31 H 1.09002 * 109.52259 * 182.43842 * 19 18 16 32 32 H 1.09008 * 109.57529 * 62.27998 * 19 18 16 33 33 H 1.09008 * 109.49921 * 297.71602 * 20 19 18 34 34 H 1.08994 * 109.50545 * 177.59859 * 20 19 18 35 35 H 1.09004 * 109.46060 * 180.80553 * 21 20 19 36 36 H 1.08997 * 109.45286 * 60.83864 * 21 20 19 37 37 H 1.00902 * 111.00293 * 297.64634 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0023 11 1 3.6221 -3.1861 0.8502 12 6 5.5655 -2.6747 -0.0023 13 8 5.9136 -3.7505 -0.8921 14 6 4.6825 -4.3348 -1.3510 15 1 4.4122 -5.1835 -0.7228 16 6 4.8234 -4.7825 -2.8073 17 1 5.2061 -3.9559 -3.4059 18 6 5.7954 -5.9619 -2.8863 19 6 5.9178 -6.4193 -4.3425 20 6 4.5302 -6.7950 -4.8696 21 6 3.5949 -5.5915 -4.7329 22 7 3.5108 -5.1929 -3.3221 23 8 3.6818 -3.2995 -1.2444 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8745 -0.6801 -0.8912 27 1 5.9674 -1.7317 -0.3731 28 1 5.9392 -2.8758 1.0017 29 1 6.7738 -5.6524 -2.5187 30 1 5.4203 -6.7840 -2.2770 31 1 6.5756 -7.2867 -4.3978 32 1 6.3299 -5.6105 -4.9460 33 1 4.1351 -7.6303 -4.2913 34 1 4.6045 -7.0809 -5.9188 35 1 2.6021 -5.8601 -5.0942 36 1 3.9833 -4.7610 -5.3224 37 1 3.1172 -5.9328 -2.7601 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260180010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:54 Heat of formation + Delta-G solvation = -101.836841 kcal Electronic energy + Delta-G solvation = -18027.240909 eV Core-core repulsion = 15189.885012 eV Total energy + Delta-G solvation = -2837.355897 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.06482 -38.42232 -34.58638 -33.21297 -32.07844 -31.57819 -30.46423 -27.21568 -24.97470 -23.39148 -22.84052 -21.45148 -20.59473 -20.11627 -17.14872 -16.36512 -16.22671 -15.50045 -15.20029 -14.83169 -14.61089 -14.35411 -14.03185 -13.68313 -13.09121 -12.79301 -12.39917 -12.23124 -12.09513 -11.93972 -11.67920 -11.34878 -11.32338 -11.19514 -10.83307 -10.59849 -10.51537 -10.11437 -9.67232 -9.50557 -9.31361 -9.07475 -8.50450 -8.19090 -5.99078 -3.96563 3.33616 3.40379 3.41166 3.73093 4.20945 4.47765 4.58659 4.70010 4.84599 4.93331 5.03884 5.14077 5.25917 5.33893 5.35145 5.46613 5.49788 5.57443 5.62410 5.73489 5.81516 5.89318 5.92658 5.95948 6.03969 6.12881 6.23871 6.31722 6.65868 6.99332 7.09208 7.18068 7.46742 7.62229 7.78807 8.57302 9.07949 9.61321 11.14521 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032835 B = 0.005910 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.550334 B = 4736.586725 C = 5239.805691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.510 4.510 8 H 0.076 0.924 9 C -0.007 4.007 10 C 0.061 3.939 11 H 0.074 0.926 12 C 0.020 3.980 13 O -0.394 6.394 14 C 0.230 3.770 15 H 0.062 0.938 16 C 0.094 3.906 17 H 0.092 0.908 18 C -0.148 4.148 19 C -0.117 4.117 20 C -0.160 4.160 21 C 0.060 3.940 22 N -0.665 5.665 23 O -0.330 6.330 24 H 0.262 0.738 25 H 0.033 0.967 26 H 0.024 0.976 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.160 -12.033 -5.940 18.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.548 4.548 8 H 0.094 0.906 9 C -0.044 4.044 10 C 0.003 3.997 11 H 0.092 0.908 12 C -0.056 4.056 13 O -0.315 6.315 14 C 0.133 3.867 15 H 0.079 0.921 16 C -0.016 4.016 17 H 0.110 0.890 18 C -0.188 4.188 19 C -0.155 4.155 20 C -0.200 4.200 21 C -0.069 4.069 22 N -0.294 5.294 23 O -0.249 6.249 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.042 0.958 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 11.809 -11.260 -6.283 17.485 hybrid contribution 0.804 -0.019 0.286 0.853 sum 12.613 -11.279 -5.998 17.952 Atomic orbital electron populations 1.69912 1.06226 1.26740 1.51195 1.24991 0.94744 0.98930 0.94734 0.86821 0.80220 0.83908 0.78561 1.20226 1.21351 1.19163 1.20966 0.88662 0.94783 1.50390 0.90575 1.19653 0.98515 0.88965 0.97279 1.23870 0.90580 0.97991 0.87225 0.90820 1.24161 0.97097 0.90680 0.93700 1.88751 1.29718 1.48792 1.64263 1.24129 0.77087 0.91344 0.94100 0.92110 1.21590 0.88835 0.97176 0.94027 0.88982 1.22197 1.01262 0.98444 0.96891 1.21537 0.96932 1.01002 0.96028 1.22320 0.96698 0.99530 1.01420 1.22022 0.99144 0.95883 0.89891 1.60356 1.22362 1.43890 1.02815 1.89752 1.48708 1.45790 1.40628 0.92771 0.94938 0.95816 0.90185 0.90608 0.90618 0.92014 0.92057 0.91770 0.92078 0.91579 0.90457 0.90844 0.84221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.27 13.96 55.43 0.77 -27.50 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.51 -14.85 9.51 -34.44 -0.33 -15.18 16 8 H 0.08 2.43 7.99 -52.49 -0.42 2.01 16 9 C -0.01 -0.17 3.72 -27.88 -0.10 -0.27 16 10 C 0.06 1.26 3.35 -25.97 -0.09 1.17 16 11 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 12 C 0.02 0.34 7.66 37.92 0.29 0.63 16 13 O -0.39 -6.76 10.99 -59.28 -0.65 -7.42 16 14 C 0.23 3.92 3.50 37.16 0.13 4.05 16 15 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 16 C 0.09 1.39 2.49 -67.72 -0.17 1.22 16 17 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 18 C -0.15 -1.73 5.28 -26.65 -0.14 -1.87 16 19 C -0.12 -1.16 6.00 -26.61 -0.16 -1.32 16 20 C -0.16 -1.52 6.08 -26.65 -0.16 -1.68 16 21 C 0.06 0.70 6.55 -3.84 -0.03 0.67 16 22 N -0.66 -9.61 6.29 -106.76 -0.67 -10.28 16 23 O -0.33 -7.16 10.85 -59.28 -0.64 -7.81 16 24 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 25 H 0.03 0.75 7.20 -51.93 -0.37 0.37 16 26 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 27 H 0.08 1.32 7.85 -51.93 -0.41 0.92 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.08 0.91 7.97 -51.93 -0.41 0.49 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 33 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.34 4.51 8.79 -39.29 -0.35 4.17 16 LS Contribution 295.17 15.07 4.45 4.45 Total: -1.00 -32.08 295.17 -8.44 -40.52 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.17 Total: 1.57 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -0.85 Total: -10.69 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.10 Total: -37.78 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -1.29 Total: -15.22 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.08 -8.44 -40.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260180010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.319 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds