Wall clock time and date at job start Mon Mar 30 2020 03:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00109 * 2 1 4 4 H 1.48497 * 109.47042 * 270.00117 * 3 2 1 5 5 H 1.48497 * 109.46953 * 30.00245 * 3 2 1 6 6 H 1.48493 * 109.46969 * 149.99904 * 3 2 1 7 7 C 1.37880 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00137 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99842 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.46957 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.64807 * 303.28405 * 10 9 7 12 12 C 1.54456 * 110.87995 * 180.02562 * 10 9 7 13 13 O 1.43888 * 105.08287 * 219.77958 * 12 10 9 14 14 C 1.43785 * 107.10429 * 358.28643 * 13 12 10 15 15 H 1.08996 * 110.17135 * 265.88403 * 14 13 12 16 16 C 1.53006 * 110.11161 * 144.26187 * 14 13 12 17 17 H 1.08998 * 109.46289 * 308.24243 * 16 14 13 18 18 C 1.53042 * 109.45784 * 68.20799 * 16 14 13 19 19 C 1.53120 * 109.27488 * 179.19421 * 18 16 14 20 20 C 1.53118 * 109.16353 * 302.34955 * 19 18 16 21 21 C 1.53034 * 109.27810 * 57.64926 * 20 19 18 22 22 N 1.46842 * 109.52699 * 300.82305 * 21 20 19 23 23 O 1.44387 * 106.17008 * 25.09065 * 14 13 12 24 24 H 0.97007 * 119.99930 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47108 * 59.99512 * 9 7 2 26 26 H 1.09001 * 109.46869 * 299.99952 * 9 7 2 27 27 H 1.09005 * 110.31923 * 338.68350 * 12 10 9 28 28 H 1.08999 * 110.31893 * 100.77347 * 12 10 9 29 29 H 1.08999 * 109.50388 * 299.13126 * 18 16 14 30 30 H 1.08991 * 109.50195 * 59.25672 * 18 16 14 31 31 H 1.09002 * 109.52259 * 182.43842 * 19 18 16 32 32 H 1.09008 * 109.57529 * 62.27998 * 19 18 16 33 33 H 1.09008 * 109.49921 * 297.71602 * 20 19 18 34 34 H 1.08994 * 109.50545 * 177.59859 * 20 19 18 35 35 H 1.09004 * 109.46060 * 180.80553 * 21 20 19 36 36 H 1.08997 * 109.45286 * 60.83864 * 21 20 19 37 37 H 1.00902 * 111.00293 * 297.64634 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0023 11 1 3.6221 -3.1861 0.8502 12 6 5.5655 -2.6747 -0.0023 13 8 5.9136 -3.7505 -0.8921 14 6 4.6825 -4.3348 -1.3510 15 1 4.4122 -5.1835 -0.7228 16 6 4.8234 -4.7825 -2.8073 17 1 5.2061 -3.9559 -3.4059 18 6 5.7954 -5.9619 -2.8863 19 6 5.9178 -6.4193 -4.3425 20 6 4.5302 -6.7950 -4.8696 21 6 3.5949 -5.5915 -4.7329 22 7 3.5108 -5.1929 -3.3221 23 8 3.6818 -3.2995 -1.2444 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8745 -0.6801 -0.8912 27 1 5.9674 -1.7317 -0.3731 28 1 5.9392 -2.8758 1.0017 29 1 6.7738 -5.6524 -2.5187 30 1 5.4203 -6.7840 -2.2770 31 1 6.5756 -7.2867 -4.3978 32 1 6.3299 -5.6105 -4.9460 33 1 4.1351 -7.6303 -4.2913 34 1 4.6045 -7.0809 -5.9188 35 1 2.6021 -5.8601 -5.0942 36 1 3.9833 -4.7610 -5.3224 37 1 3.1172 -5.9328 -2.7601 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260180010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:53 Heat of formation + Delta-G solvation = -125.410231 kcal Electronic energy + Delta-G solvation = -18028.263128 eV Core-core repulsion = 15189.885012 eV Total energy + Delta-G solvation = -2838.378116 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.43898 -39.48672 -36.14914 -35.12986 -33.53919 -32.62117 -31.97869 -28.90640 -26.23840 -24.76180 -24.21551 -22.76302 -21.91171 -21.34420 -19.07439 -18.01395 -17.56711 -16.95143 -16.44287 -16.35845 -15.76419 -15.52554 -15.32849 -14.85342 -14.73267 -14.14379 -13.99263 -13.72261 -13.55813 -13.20507 -13.11070 -13.00730 -12.39503 -12.34719 -12.20276 -11.89935 -11.71822 -11.62685 -11.46193 -11.38392 -11.00248 -10.76453 -10.57327 -9.21960 -8.26446 -6.30537 1.37215 1.39633 1.50171 2.37401 2.45542 2.89567 3.10730 3.48306 3.68194 3.75465 3.88545 3.93544 4.02774 4.08639 4.16443 4.28138 4.39234 4.44644 4.56506 4.61561 4.74193 4.78332 4.90520 4.96991 5.05121 5.09445 5.10013 5.14681 5.23547 5.32591 5.38484 5.61270 6.03091 6.16524 6.29343 6.46470 6.75372 7.31489 8.90978 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032835 B = 0.005910 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.550334 B = 4736.586725 C = 5239.805691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.953 3.047 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.236 1.236 7 C -0.521 4.521 8 H 0.026 0.974 9 C -0.004 4.004 10 C 0.055 3.945 11 H 0.072 0.928 12 C 0.029 3.971 13 O -0.394 6.394 14 C 0.226 3.774 15 H 0.074 0.926 16 C 0.099 3.901 17 H 0.071 0.929 18 C -0.139 4.139 19 C -0.115 4.115 20 C -0.151 4.151 21 C 0.058 3.942 22 N -0.691 5.691 23 O -0.368 6.368 24 H 0.266 0.734 25 H 0.053 0.947 26 H 0.022 0.978 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.678 -12.212 -6.071 20.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.775 3.225 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.159 1.159 7 C -0.559 4.559 8 H 0.045 0.955 9 C -0.041 4.041 10 C -0.002 4.002 11 H 0.090 0.910 12 C -0.047 4.047 13 O -0.315 6.315 14 C 0.131 3.869 15 H 0.091 0.909 16 C -0.012 4.012 17 H 0.090 0.910 18 C -0.178 4.178 19 C -0.153 4.153 20 C -0.190 4.190 21 C -0.071 4.071 22 N -0.322 5.322 23 O -0.288 6.288 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.105 0.895 28 H 0.127 0.873 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 14.354 -11.467 -6.414 19.459 hybrid contribution -0.077 -0.049 0.307 0.320 sum 14.277 -11.516 -6.107 19.333 Atomic orbital electron populations 1.70083 1.08431 1.28098 1.52774 1.26040 0.95680 1.03574 0.94159 0.85631 0.79839 0.77986 0.79015 1.19827 1.20780 1.15936 1.21241 0.91541 0.93041 1.50106 0.95527 1.19580 0.94915 0.91788 0.97822 1.23800 0.93410 0.95898 0.87097 0.91006 1.24160 0.93889 0.91174 0.95491 1.88738 1.29465 1.48876 1.64460 1.24416 0.76074 0.90463 0.95971 0.90884 1.21507 0.89788 0.97803 0.92066 0.91044 1.22112 1.00035 0.97234 0.98466 1.21547 0.97523 1.01623 0.94577 1.22232 0.95736 0.98411 1.02664 1.22069 1.00205 0.96653 0.88129 1.60327 1.22682 1.44816 1.04334 1.89715 1.50740 1.47390 1.41001 0.92545 0.92895 0.96012 0.89463 0.87256 0.90813 0.91097 0.90100 0.92093 0.91368 0.89814 0.89876 0.91790 0.83761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.58 13.96 21.45 0.30 -61.28 16 2 C 0.00 0.10 5.47 84.66 0.46 0.56 16 3 Si 0.95 44.65 27.47 68.60 1.88 46.54 16 4 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.24 -9.85 6.54 99.48 0.65 -9.19 16 7 C -0.52 -31.18 9.51 25.60 0.24 -30.94 16 8 H 0.03 1.79 7.99 -2.91 -0.02 1.77 16 9 C 0.00 -0.18 3.72 29.85 0.11 -0.07 16 10 C 0.06 2.26 3.35 31.09 0.10 2.36 16 11 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 12 C 0.03 0.92 7.66 72.48 0.56 1.48 16 13 O -0.39 -12.81 10.99 -125.98 -1.38 -14.20 16 14 C 0.23 7.60 3.50 71.98 0.25 7.85 16 15 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 16 C 0.10 2.87 2.49 44.94 0.11 2.98 16 17 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 18 C -0.14 -2.98 5.28 30.65 0.16 -2.82 16 19 C -0.12 -2.01 6.00 30.67 0.18 -1.83 16 20 C -0.15 -2.53 6.08 30.65 0.19 -2.34 16 21 C 0.06 1.31 6.55 86.33 0.57 1.88 16 22 N -0.69 -19.97 6.29 -491.69 -3.10 -23.07 16 23 O -0.37 -16.26 10.85 -125.98 -1.37 -17.63 16 24 H 0.27 15.95 8.31 -92.70 -0.77 15.18 16 25 H 0.05 2.30 7.20 -2.39 -0.02 2.28 16 26 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 27 H 0.09 2.64 7.85 -2.38 -0.02 2.62 16 28 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 29 H 0.07 1.62 7.97 -2.39 -0.02 1.60 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.34 9.11 8.79 -89.69 -0.79 8.32 16 Total: -1.00 -71.33 295.17 -0.53 -71.86 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.20 Total: 18.66 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: 2.94 Total: -20.88 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -2.80 Total: -84.35 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -2.75 Total: -31.83 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.54 kcal Total: -71.33 -0.53 -71.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260180010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.550 kcal (2) G-P(sol) polarization free energy of solvation -71.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds