Wall clock time and date at job start Mon Mar 30 2020 03:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 119.99901 * 2 1 4 4 H 1.48510 * 109.46902 * 269.99665 * 3 2 1 5 5 H 1.48495 * 109.47676 * 29.99528 * 3 2 1 6 6 H 1.48505 * 109.47307 * 150.00126 * 3 2 1 7 7 C 1.37879 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99894 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99837 * 180.02562 * 7 2 1 10 10 C 1.53008 * 109.46735 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.62110 * 303.37646 * 10 9 7 12 12 C 1.54916 * 110.84005 * 180.19712 * 10 9 7 13 13 O 1.44582 * 101.63567 * 205.89171 * 12 10 9 14 14 C 1.43751 * 104.92021 * 36.26581 * 13 12 10 15 15 H 1.09008 * 109.62952 * 95.32072 * 14 13 12 16 16 C 1.53004 * 109.63499 * 215.71162 * 14 13 12 17 17 H 1.08997 * 109.46420 * 58.88385 * 16 14 13 18 18 C 1.53039 * 109.45858 * 298.90860 * 16 14 13 19 19 C 1.53123 * 109.27546 * 180.80464 * 18 16 14 20 20 C 1.53120 * 109.21163 * 57.62218 * 19 18 16 21 21 C 1.53048 * 109.27450 * 302.43753 * 20 19 18 22 22 N 1.46842 * 109.46195 * 178.85412 * 16 14 13 23 23 O 1.43366 * 108.66933 * 335.51912 * 14 13 12 24 24 H 0.96998 * 120.00312 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46945 * 60.00352 * 9 7 2 26 26 H 1.08993 * 109.47082 * 299.99914 * 9 7 2 27 27 H 1.09000 * 110.97648 * 324.08141 * 12 10 9 28 28 H 1.09001 * 110.97847 * 87.82583 * 12 10 9 29 29 H 1.08999 * 109.50420 * 60.86660 * 18 16 14 30 30 H 1.09002 * 109.53427 * 300.76162 * 18 16 14 31 31 H 1.09002 * 109.52319 * 177.56011 * 19 18 16 32 32 H 1.08995 * 109.52318 * 297.68693 * 19 18 16 33 33 H 1.09000 * 109.50719 * 62.32149 * 20 19 18 34 34 H 1.09003 * 109.50116 * 182.43702 * 20 19 18 35 35 H 1.08999 * 109.41208 * 299.06816 * 21 20 19 36 36 H 1.08998 * 109.44995 * 179.12696 * 21 20 19 37 37 H 1.00910 * 111.00230 * 57.66338 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6366 0.0010 11 1 3.6200 -3.1858 0.8526 12 6 5.5702 -2.6736 0.0066 13 8 5.8335 -3.9533 -0.6126 14 6 4.8111 -4.0980 -1.6126 15 1 5.1924 -3.7632 -2.5774 16 6 4.3892 -5.5656 -1.7080 17 1 4.0203 -5.9012 -0.7388 18 6 5.5933 -6.4167 -2.1179 19 6 5.1618 -7.8814 -2.2316 20 6 4.0201 -7.9931 -3.2458 21 6 2.8622 -7.0951 -2.8040 22 7 3.3256 -5.7048 -2.7109 23 8 3.6838 -3.2963 -1.2358 24 1 -0.4850 0.8400 -0.0004 25 1 3.8744 -0.6800 0.8911 26 1 3.8751 -0.6804 -0.8888 27 1 5.9822 -1.8581 -0.5879 28 1 5.9576 -2.6458 1.0250 29 1 6.3765 -6.3254 -1.3653 30 1 5.9717 -6.0730 -3.0806 31 1 6.0059 -8.4850 -2.5653 32 1 4.8213 -8.2374 -1.2593 33 1 4.3724 -7.6748 -4.2269 34 1 3.6801 -9.0274 -3.2986 35 1 2.5006 -7.4234 -1.8295 36 1 2.0538 -7.1605 -3.5322 37 1 3.6302 -5.3642 -3.6107 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260180015.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:55 Heat of formation + Delta-G solvation = -100.901247 kcal Electronic energy + Delta-G solvation = -18043.204764 eV Core-core repulsion = 15205.889437 eV Total energy + Delta-G solvation = -2837.315327 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.12954 -38.37985 -34.63226 -33.20689 -32.05186 -31.55068 -30.43044 -27.20018 -24.91554 -23.44816 -22.84358 -21.42309 -20.49951 -20.29625 -16.93948 -16.65400 -16.24343 -15.71999 -15.07001 -14.75619 -14.41452 -14.20509 -14.05520 -13.33854 -13.18293 -12.79150 -12.63664 -12.33138 -12.10111 -11.89731 -11.68135 -11.45149 -11.33030 -11.18657 -10.84936 -10.57767 -10.47165 -10.12886 -9.77524 -9.57523 -9.24010 -8.86017 -8.49968 -8.14769 -5.97972 -3.95333 3.32744 3.39686 3.40419 3.68930 4.30177 4.47857 4.57729 4.70849 4.85494 4.94697 5.04148 5.17867 5.27418 5.34520 5.37047 5.44392 5.48548 5.57590 5.72146 5.73785 5.78369 5.91152 5.93272 5.95539 6.04097 6.10577 6.27303 6.33832 6.61997 6.97897 7.12109 7.22649 7.48510 7.71368 7.84061 8.59443 9.10787 9.62315 11.15709 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036403 B = 0.005813 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.986943 B = 4815.664542 C = 5392.344758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.508 4.508 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.069 3.931 11 H 0.076 0.924 12 C 0.015 3.985 13 O -0.388 6.388 14 C 0.236 3.764 15 H 0.070 0.930 16 C 0.081 3.919 17 H 0.089 0.911 18 C -0.148 4.148 19 C -0.118 4.118 20 C -0.160 4.160 21 C 0.060 3.940 22 N -0.664 5.664 23 O -0.342 6.342 24 H 0.262 0.738 25 H 0.032 0.968 26 H 0.021 0.979 27 H 0.071 0.929 28 H 0.102 0.898 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.068 -12.675 -4.446 18.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.546 4.546 8 H 0.095 0.905 9 C -0.049 4.049 10 C 0.012 3.988 11 H 0.094 0.906 12 C -0.061 4.061 13 O -0.309 6.309 14 C 0.140 3.860 15 H 0.087 0.913 16 C -0.030 4.030 17 H 0.107 0.893 18 C -0.188 4.188 19 C -0.155 4.155 20 C -0.199 4.199 21 C -0.069 4.069 22 N -0.294 5.294 23 O -0.262 6.262 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.039 0.961 27 H 0.090 0.910 28 H 0.120 0.880 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 11.366 -12.478 -4.065 17.361 hybrid contribution 1.221 0.568 -0.497 1.435 sum 12.587 -11.910 -4.562 17.919 Atomic orbital electron populations 1.69910 1.06224 1.26697 1.51265 1.25003 0.94738 0.98894 0.94833 0.86830 0.80230 0.83988 0.78483 1.20297 1.21363 1.19197 1.20985 0.88683 0.94801 1.50174 0.90474 1.19733 0.98653 0.89436 0.97097 1.23829 0.90849 0.96981 0.87116 0.90592 1.24566 0.97190 0.85315 0.99038 1.89030 1.50908 1.37984 1.52936 1.23868 0.79288 0.91196 0.91682 0.91320 1.21876 0.90072 0.93606 0.97447 0.89326 1.22182 0.99142 0.95388 1.02064 1.21541 0.98050 0.96384 0.99568 1.22317 0.97560 1.01011 0.99041 1.22016 0.96092 0.86743 1.02078 1.60355 1.38470 1.19518 1.11016 1.89155 1.35695 1.61244 1.40139 0.92794 0.95044 0.96110 0.91047 0.87974 0.90641 0.92125 0.92158 0.91842 0.92137 0.91623 0.90882 0.90526 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.32 13.96 55.43 0.77 -27.54 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.51 -14.81 9.51 -34.44 -0.33 -15.14 16 8 H 0.08 2.49 7.99 -52.49 -0.42 2.07 16 9 C -0.01 -0.29 3.83 -27.88 -0.11 -0.39 16 10 C 0.07 1.43 3.61 -25.72 -0.09 1.34 16 11 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 12 C 0.02 0.25 7.40 38.17 0.28 0.53 16 13 O -0.39 -6.45 10.73 -59.05 -0.63 -7.08 16 14 C 0.24 4.01 3.67 37.16 0.14 4.15 16 15 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 16 C 0.08 1.19 2.47 -67.72 -0.17 1.02 16 17 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 18 C -0.15 -1.75 5.21 -26.65 -0.14 -1.89 16 19 C -0.12 -1.20 6.00 -26.61 -0.16 -1.35 16 20 C -0.16 -1.54 6.08 -26.64 -0.16 -1.70 16 21 C 0.06 0.71 6.55 -3.83 -0.03 0.68 16 22 N -0.66 -9.60 6.37 -106.76 -0.68 -10.28 16 23 O -0.34 -7.39 10.61 -59.05 -0.63 -8.01 16 24 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 25 H 0.03 0.72 7.20 -51.93 -0.37 0.34 16 26 H 0.02 0.50 7.57 -51.93 -0.39 0.10 16 27 H 0.07 1.11 8.05 -51.93 -0.42 0.69 16 28 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 29 H 0.07 0.93 7.75 -51.93 -0.40 0.52 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.34 4.47 8.79 -39.29 -0.35 4.13 16 LS Contribution 294.92 15.07 4.44 4.44 Total: -1.00 -31.98 294.92 -8.42 -40.40 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.17 Total: 1.94 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -0.86 Total: -10.90 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.09 Total: -37.82 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -1.26 Total: -15.09 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.98 -8.42 -40.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260180015.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.501 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds