Wall clock time and date at job start Mon Mar 30 2020 03:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00184 * 2 1 4 4 H 1.48494 * 109.47380 * 270.00271 * 3 2 1 5 5 H 1.48499 * 109.47149 * 30.00258 * 3 2 1 6 6 H 1.48509 * 109.47124 * 149.99961 * 3 2 1 7 7 C 1.37878 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00036 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00241 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47386 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.86135 * 308.81633 * 10 9 7 12 12 C 1.54912 * 110.97955 * 185.00091 * 10 9 7 13 13 O 1.44185 * 103.07929 * 206.29574 * 12 10 9 14 14 C 1.43372 * 107.29110 * 21.43630 * 13 12 10 15 15 H 1.08999 * 109.63059 * 240.94358 * 14 13 12 16 16 C 1.52991 * 109.63560 * 120.54820 * 14 13 12 17 17 H 1.09000 * 109.46782 * 186.43388 * 16 14 13 18 18 C 1.53039 * 109.46220 * 66.45341 * 16 14 13 19 19 C 1.53123 * 109.31189 * 180.79769 * 18 16 14 20 20 C 1.53203 * 109.11533 * 57.63615 * 19 18 16 21 21 C 1.53030 * 109.30370 * 302.37368 * 20 19 18 22 22 N 1.46846 * 109.52435 * 59.17688 * 21 20 19 23 23 O 1.43751 * 108.78714 * 0.67132 * 14 13 12 24 24 H 0.97003 * 119.99634 * 359.97438 * 1 2 3 25 25 H 1.09012 * 109.46828 * 59.99821 * 9 7 2 26 26 H 1.09005 * 109.47122 * 300.00616 * 9 7 2 27 27 H 1.09004 * 110.69858 * 87.89669 * 12 10 9 28 28 H 1.09004 * 110.69627 * 324.69512 * 12 10 9 29 29 H 1.09002 * 109.50563 * 300.76102 * 18 16 14 30 30 H 1.09003 * 109.50107 * 60.84083 * 18 16 14 31 31 H 1.08994 * 109.52349 * 177.58253 * 19 18 16 32 32 H 1.08997 * 109.52263 * 297.77214 * 19 18 16 33 33 H 1.08997 * 109.49417 * 182.41991 * 20 19 18 34 34 H 1.09007 * 109.52297 * 62.34418 * 20 19 18 35 35 H 1.09004 * 109.46094 * 299.16423 * 21 20 19 36 36 H 1.08994 * 109.46717 * 179.19390 * 21 20 19 37 37 H 1.00903 * 110.99902 * 174.16633 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 1 3.5493 -3.2152 0.7929 12 6 5.5649 -2.6792 0.1245 13 8 5.9094 -3.9283 -0.5079 14 6 4.8208 -4.2836 -1.3706 15 1 4.3975 -5.2364 -1.0527 16 6 5.3230 -4.3994 -2.8111 17 1 4.4764 -4.5565 -3.4794 18 6 6.2864 -5.5834 -2.9216 19 6 6.8023 -5.6839 -4.3598 20 6 7.4812 -4.3650 -4.7426 21 6 6.4833 -3.2163 -4.5793 22 7 6.0203 -3.1628 -3.1868 23 8 3.8140 -3.2606 -1.2909 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6804 0.8889 26 1 3.8745 -0.6800 -0.8911 27 1 5.8664 -2.6818 1.1720 28 1 6.0178 -1.8413 -0.4056 29 1 7.1264 -5.4336 -2.2433 30 1 5.7645 -6.5031 -2.6570 31 1 7.5216 -6.4996 -4.4325 32 1 5.9669 -5.8725 -5.0340 33 1 7.8129 -4.4143 -5.7797 34 1 8.3404 -4.1958 -4.0935 35 1 5.6312 -3.3789 -5.2394 36 1 6.9679 -2.2748 -4.8373 37 1 5.4346 -2.3559 -3.0313 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260180019.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:57 Heat of formation + Delta-G solvation = -102.736099 kcal Electronic energy + Delta-G solvation = -18209.839811 eV Core-core repulsion = 15372.444919 eV Total energy + Delta-G solvation = -2837.394892 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.11815 -38.02155 -34.57408 -33.27939 -32.09818 -31.72631 -30.44989 -27.20633 -25.02114 -23.36743 -22.97514 -21.39968 -20.50652 -19.46018 -17.23810 -16.60134 -16.40144 -15.82924 -15.10870 -14.62037 -14.37541 -13.89617 -13.82955 -13.55090 -13.06882 -13.00645 -12.80740 -12.51123 -12.19085 -11.86588 -11.74762 -11.39883 -11.17718 -10.80592 -10.76259 -10.54436 -10.37131 -10.10947 -9.67269 -9.56028 -9.23319 -9.06152 -8.57941 -8.25113 -6.06699 -4.05137 3.28346 3.35834 3.36861 3.93741 4.25980 4.37595 4.41406 4.80676 4.89330 4.99294 5.19279 5.25551 5.29505 5.37081 5.44665 5.54789 5.61673 5.64900 5.69938 5.77974 5.83496 5.89298 5.93005 6.10154 6.15179 6.16917 6.31845 6.41511 6.56098 6.97130 7.14625 7.18942 7.54774 7.64427 7.72184 8.48891 8.98583 9.53592 11.06750 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.034572 B = 0.005995 C = 0.005724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.704726 B = 4669.786156 C = 4890.794705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.516 4.516 8 H 0.074 0.926 9 C -0.007 4.007 10 C 0.069 3.931 11 H 0.077 0.923 12 C 0.024 3.976 13 O -0.377 6.377 14 C 0.232 3.768 15 H 0.077 0.923 16 C 0.080 3.920 17 H 0.050 0.950 18 C -0.108 4.108 19 C -0.119 4.119 20 C -0.116 4.116 21 C 0.058 3.942 22 N -0.675 5.675 23 O -0.363 6.363 24 H 0.263 0.737 25 H 0.035 0.965 26 H 0.024 0.976 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.027 0.973 36 H 0.072 0.928 37 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.159 -8.404 -6.280 17.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.554 4.554 8 H 0.092 0.908 9 C -0.044 4.044 10 C 0.012 3.988 11 H 0.094 0.906 12 C -0.053 4.053 13 O -0.298 6.298 14 C 0.136 3.864 15 H 0.094 0.906 16 C -0.031 4.031 17 H 0.067 0.933 18 C -0.146 4.146 19 C -0.157 4.157 20 C -0.154 4.154 21 C -0.071 4.071 22 N -0.308 5.308 23 O -0.283 6.283 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.108 0.892 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.090 0.910 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 14.617 -8.552 -6.153 18.018 hybrid contribution -0.657 1.065 -0.439 1.326 sum 13.960 -7.487 -6.592 17.158 Atomic orbital electron populations 1.69908 1.06282 1.26886 1.50921 1.25002 0.94755 0.99044 0.94591 0.86801 0.80284 0.83740 0.78575 1.20240 1.21302 1.19018 1.20996 0.88796 0.94709 1.50859 0.90782 1.19624 0.98246 0.89055 0.97451 1.24026 0.92205 0.97832 0.84730 0.90554 1.24308 0.95977 0.86830 0.98139 1.88784 1.41757 1.39136 1.60092 1.24006 0.79775 0.92615 0.90010 0.90583 1.21872 0.94950 0.91429 0.94838 0.93261 1.21509 0.99629 0.96269 0.97155 1.21571 0.99967 0.97487 0.96645 1.21594 0.98743 0.94399 1.00692 1.21895 0.97296 0.98926 0.89027 1.60199 1.44757 1.04494 1.21355 1.89337 1.51861 1.49664 1.37487 0.92680 0.94747 0.95734 0.89243 0.90868 0.90313 0.91838 0.91924 0.92461 0.92065 0.91177 0.95526 0.90969 0.82919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 7 C -0.52 -14.63 9.62 -34.44 -0.33 -14.96 16 8 H 0.07 2.30 7.99 -52.49 -0.42 1.89 16 9 C -0.01 -0.15 3.82 -27.88 -0.11 -0.26 16 10 C 0.07 1.38 3.41 -25.72 -0.09 1.30 16 11 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 12 C 0.02 0.40 7.54 38.17 0.29 0.69 16 13 O -0.38 -6.41 10.55 -59.04 -0.62 -7.03 16 14 C 0.23 3.90 3.70 37.15 0.14 4.03 16 15 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 16 C 0.08 1.17 2.53 -67.72 -0.17 1.00 16 17 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 18 C -0.11 -1.32 5.29 -26.65 -0.14 -1.46 16 19 C -0.12 -1.25 6.01 -26.56 -0.16 -1.41 16 20 C -0.12 -1.23 6.09 -26.61 -0.16 -1.40 16 21 C 0.06 0.71 6.55 -3.84 -0.03 0.68 16 22 N -0.67 -9.94 6.25 -106.76 -0.67 -10.60 16 23 O -0.36 -7.44 10.56 -59.04 -0.62 -8.07 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.03 0.77 7.20 -51.92 -0.37 0.40 16 26 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 27 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 28 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 29 H 0.08 1.06 7.86 -51.93 -0.41 0.65 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 35 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.35 5.69 8.36 -39.29 -0.33 5.36 16 LS Contribution 294.44 15.07 4.44 4.44 Total: -1.00 -30.62 294.44 -8.38 -39.00 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.16 Total: 2.49 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -0.86 Total: -9.94 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.11 Total: -37.59 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -1.25 Total: -15.10 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.62 -8.38 -39.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260180019.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.732 kcal (2) G-P(sol) polarization free energy of solvation -30.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds