Wall clock time and date at job start Mon Mar 30 2020 03:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00184 * 2 1 4 4 H 1.48494 * 109.47380 * 270.00271 * 3 2 1 5 5 H 1.48499 * 109.47149 * 30.00258 * 3 2 1 6 6 H 1.48509 * 109.47124 * 149.99961 * 3 2 1 7 7 C 1.37878 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00036 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00241 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47386 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.86135 * 308.81633 * 10 9 7 12 12 C 1.54912 * 110.97955 * 185.00091 * 10 9 7 13 13 O 1.44185 * 103.07929 * 206.29574 * 12 10 9 14 14 C 1.43372 * 107.29110 * 21.43630 * 13 12 10 15 15 H 1.08999 * 109.63059 * 240.94358 * 14 13 12 16 16 C 1.52991 * 109.63560 * 120.54820 * 14 13 12 17 17 H 1.09000 * 109.46782 * 186.43388 * 16 14 13 18 18 C 1.53039 * 109.46220 * 66.45341 * 16 14 13 19 19 C 1.53123 * 109.31189 * 180.79769 * 18 16 14 20 20 C 1.53203 * 109.11533 * 57.63615 * 19 18 16 21 21 C 1.53030 * 109.30370 * 302.37368 * 20 19 18 22 22 N 1.46846 * 109.52435 * 59.17688 * 21 20 19 23 23 O 1.43751 * 108.78714 * 0.67132 * 14 13 12 24 24 H 0.97003 * 119.99634 * 359.97438 * 1 2 3 25 25 H 1.09012 * 109.46828 * 59.99821 * 9 7 2 26 26 H 1.09005 * 109.47122 * 300.00616 * 9 7 2 27 27 H 1.09004 * 110.69858 * 87.89669 * 12 10 9 28 28 H 1.09004 * 110.69627 * 324.69512 * 12 10 9 29 29 H 1.09002 * 109.50563 * 300.76102 * 18 16 14 30 30 H 1.09003 * 109.50107 * 60.84083 * 18 16 14 31 31 H 1.08994 * 109.52349 * 177.58253 * 19 18 16 32 32 H 1.08997 * 109.52263 * 297.77214 * 19 18 16 33 33 H 1.08997 * 109.49417 * 182.41991 * 20 19 18 34 34 H 1.09007 * 109.52297 * 62.34418 * 20 19 18 35 35 H 1.09004 * 109.46094 * 299.16423 * 21 20 19 36 36 H 1.08994 * 109.46717 * 179.19390 * 21 20 19 37 37 H 1.00903 * 110.99902 * 174.16633 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 1 3.5493 -3.2152 0.7929 12 6 5.5649 -2.6792 0.1245 13 8 5.9094 -3.9283 -0.5079 14 6 4.8208 -4.2836 -1.3706 15 1 4.3975 -5.2364 -1.0527 16 6 5.3230 -4.3994 -2.8111 17 1 4.4764 -4.5565 -3.4794 18 6 6.2864 -5.5834 -2.9216 19 6 6.8023 -5.6839 -4.3598 20 6 7.4812 -4.3650 -4.7426 21 6 6.4833 -3.2163 -4.5793 22 7 6.0203 -3.1628 -3.1868 23 8 3.8140 -3.2606 -1.2909 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6804 0.8889 26 1 3.8745 -0.6800 -0.8911 27 1 5.8664 -2.6818 1.1720 28 1 6.0178 -1.8413 -0.4056 29 1 7.1264 -5.4336 -2.2433 30 1 5.7645 -6.5031 -2.6570 31 1 7.5216 -6.4996 -4.4325 32 1 5.9669 -5.8725 -5.0340 33 1 7.8129 -4.4143 -5.7797 34 1 8.3404 -4.1958 -4.0935 35 1 5.6312 -3.3789 -5.2394 36 1 6.9679 -2.2748 -4.8373 37 1 5.4346 -2.3559 -3.0313 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260180019.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:57 Heat of formation + Delta-G solvation = -124.627923 kcal Electronic energy + Delta-G solvation = -18210.789112 eV Core-core repulsion = 15372.444919 eV Total energy + Delta-G solvation = -2838.344192 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.48970 -39.10179 -36.10130 -35.18037 -33.51329 -32.85772 -31.92834 -28.86753 -26.27121 -24.80730 -24.26852 -22.64172 -22.10436 -20.49738 -19.09899 -18.20749 -17.70251 -17.12249 -16.62565 -16.22180 -15.65260 -15.24159 -14.97052 -14.76835 -14.53410 -14.23352 -14.04299 -13.98314 -13.74364 -13.38297 -13.19474 -13.16107 -12.38292 -12.20099 -11.95720 -11.74276 -11.66416 -11.54819 -11.44705 -11.23876 -10.93951 -10.78568 -10.39977 -9.37530 -8.29129 -6.33981 1.37679 1.39212 1.50508 2.36018 2.55461 3.02208 3.10952 3.16761 3.69468 3.83990 3.92608 4.02981 4.10110 4.22967 4.27956 4.35354 4.39868 4.46625 4.62404 4.65907 4.78056 4.84372 4.86623 4.99491 5.02738 5.08821 5.12341 5.23485 5.26438 5.39476 5.48990 5.59556 6.10567 6.21251 6.25750 6.36707 6.71936 7.28887 8.88142 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.034572 B = 0.005995 C = 0.005724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.704726 B = 4669.786156 C = 4890.794705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.953 3.047 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.236 1.236 7 C -0.526 4.526 8 H 0.025 0.975 9 C -0.002 4.002 10 C 0.066 3.934 11 H 0.067 0.933 12 C 0.036 3.964 13 O -0.377 6.377 14 C 0.228 3.772 15 H 0.085 0.915 16 C 0.081 3.919 17 H 0.039 0.961 18 C -0.103 4.103 19 C -0.117 4.117 20 C -0.113 4.113 21 C 0.054 3.946 22 N -0.682 5.682 23 O -0.392 6.392 24 H 0.266 0.734 25 H 0.052 0.948 26 H 0.028 0.972 27 H 0.117 0.883 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.024 0.976 36 H 0.081 0.919 37 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.917 -8.062 -6.700 19.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.776 3.224 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.159 1.159 7 C -0.564 4.564 8 H 0.043 0.957 9 C -0.039 4.039 10 C 0.009 3.991 11 H 0.085 0.915 12 C -0.040 4.040 13 O -0.298 6.298 14 C 0.132 3.868 15 H 0.102 0.898 16 C -0.030 4.030 17 H 0.057 0.943 18 C -0.141 4.141 19 C -0.154 4.154 20 C -0.150 4.150 21 C -0.075 4.075 22 N -0.314 5.314 23 O -0.313 6.313 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.135 0.865 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.042 0.958 36 H 0.099 0.901 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 17.406 -8.243 -6.575 20.351 hybrid contribution -1.595 0.857 -0.329 1.840 sum 15.812 -7.385 -6.905 18.768 Atomic orbital electron populations 1.70080 1.08503 1.28200 1.52605 1.26043 0.95648 1.03639 0.94021 0.85619 0.79816 0.77829 0.79142 1.19556 1.21012 1.15895 1.21287 0.91681 0.92966 1.50481 0.95677 1.19532 0.94592 0.91618 0.98165 1.23897 0.94740 0.95869 0.84597 0.91481 1.24267 0.92919 0.86973 0.99847 1.88774 1.41615 1.39252 1.60144 1.24245 0.79170 0.91884 0.91470 0.89816 1.21891 0.95335 0.92615 0.93131 0.94290 1.21495 0.98690 0.95472 0.98405 1.21583 1.00492 0.98159 0.95203 1.21590 0.97920 0.93595 1.01935 1.22032 0.97640 1.00300 0.87539 1.60282 1.44146 1.03873 1.23053 1.89310 1.53509 1.50862 1.37582 0.92494 0.92950 0.95349 0.86474 0.90299 0.91230 0.90719 0.89957 0.92218 0.89922 0.91636 0.95815 0.90096 0.84344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.48 13.96 21.45 0.30 -60.18 16 2 C 0.00 0.17 5.47 84.66 0.46 0.64 16 3 Si 0.95 43.53 27.47 68.60 1.88 45.41 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.24 -9.59 6.54 99.48 0.65 -8.93 16 7 C -0.53 -30.63 9.62 25.60 0.25 -30.38 16 8 H 0.02 1.65 7.99 -2.91 -0.02 1.62 16 9 C 0.00 -0.08 3.82 29.85 0.11 0.03 16 10 C 0.07 2.62 3.41 31.25 0.11 2.73 16 11 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 12 C 0.04 1.13 7.54 72.64 0.55 1.68 16 13 O -0.38 -12.18 10.55 -126.22 -1.33 -13.51 16 14 C 0.23 7.52 3.70 71.98 0.27 7.79 16 15 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 16 C 0.08 2.31 2.53 44.93 0.11 2.43 16 17 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 18 C -0.10 -2.34 5.29 30.65 0.16 -2.17 16 19 C -0.12 -2.15 6.01 30.70 0.18 -1.96 16 20 C -0.11 -2.10 6.09 30.67 0.19 -1.91 16 21 C 0.05 1.22 6.55 86.32 0.57 1.79 16 22 N -0.68 -19.33 6.25 -491.69 -3.07 -22.41 16 23 O -0.39 -16.24 10.56 -126.22 -1.33 -17.57 16 24 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 25 H 0.05 2.22 7.20 -2.38 -0.02 2.20 16 26 H 0.03 1.28 7.57 -2.38 -0.02 1.26 16 27 H 0.12 3.04 8.14 -2.38 -0.02 3.02 16 28 H 0.08 2.41 8.04 -2.39 -0.02 2.39 16 29 H 0.07 1.73 7.86 -2.39 -0.02 1.71 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.02 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.34 10.82 8.36 -89.69 -0.75 10.07 16 Total: -1.00 -67.47 294.44 -0.36 -67.83 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.23 Total: 19.77 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 2.96 Total: -19.35 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -2.77 Total: -82.58 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -2.66 Total: -31.08 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.88 Total: 45.41 kcal Total: -67.47 -0.36 -67.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260180019.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.794 kcal (2) G-P(sol) polarization free energy of solvation -67.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds