Wall clock time and date at job start Mon Mar 30 2020 03:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.62894 * 2 1 4 4 H 1.09000 * 110.62761 * 179.97438 * 3 2 1 5 5 C 1.55138 * 110.70473 * 303.10693 * 3 2 1 6 6 C 1.55117 * 101.55938 * 153.90572 * 5 3 2 7 7 N 1.47839 * 104.90649 * 323.15570 * 6 5 3 8 8 C 1.47450 * 108.56571 * 23.97274 * 7 6 5 9 9 O 1.43361 * 109.63279 * 239.75669 * 2 1 3 10 10 C 1.44194 * 107.28975 * 240.79129 * 9 2 1 11 11 C 1.54917 * 103.07549 * 21.43932 * 10 9 2 12 12 H 1.08997 * 110.98093 * 82.54677 * 11 10 9 13 13 C 1.53003 * 110.97667 * 206.33323 * 11 10 9 14 14 C 1.50693 * 109.47044 * 178.78682 * 13 11 10 15 15 H 1.08003 * 120.00265 * 359.97438 * 14 13 11 16 16 C 1.37880 * 120.00151 * 179.97438 * 14 13 11 17 17 N 1.31522 * 119.99529 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00258 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47080 * 60.00300 * 18 16 14 20 20 H 1.48501 * 109.46983 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47141 * 300.00113 * 18 16 14 22 22 O 1.43748 * 109.62841 * 120.38962 * 2 1 3 23 23 H 1.08998 * 109.46951 * 300.30993 * 1 2 3 24 24 H 1.09005 * 109.46741 * 60.30639 * 1 2 3 25 25 H 1.08996 * 109.47202 * 180.30876 * 1 2 3 26 26 H 1.09002 * 110.98653 * 272.12332 * 5 3 2 27 27 H 1.08996 * 110.99736 * 35.93989 * 5 3 2 28 28 H 1.08997 * 110.42619 * 204.23242 * 6 5 3 29 29 H 1.09000 * 110.21780 * 81.96644 * 6 5 3 30 30 H 1.00902 * 111.00658 * 146.24024 * 7 6 5 31 31 H 1.08998 * 109.88406 * 239.60526 * 8 7 6 32 32 H 1.08997 * 110.02249 * 118.49889 * 8 7 6 33 33 H 1.08996 * 110.69298 * 263.03989 * 10 9 2 34 34 H 1.09004 * 110.84457 * 139.89974 * 10 9 2 35 35 H 1.09001 * 109.46812 * 298.78592 * 13 11 10 36 36 H 1.09000 * 109.47168 * 58.78574 * 13 11 10 37 37 H 0.97002 * 119.99535 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 1 3.1339 1.4601 0.0005 5 6 1.4817 2.2240 -1.2156 6 6 1.5188 3.6829 -0.6898 7 7 1.1625 3.5805 0.7413 8 6 1.4847 2.2198 1.2092 9 8 2.0117 -0.6801 -1.1665 10 6 2.7885 -1.8079 -0.7149 11 6 2.2652 -2.0401 0.7246 12 1 1.3457 -2.6253 0.7159 13 6 3.3310 -2.7111 1.5933 14 6 2.7980 -2.8936 2.9910 15 1 1.7991 -2.5635 3.2354 16 6 3.5854 -3.4819 3.9578 17 7 4.8020 -3.8834 3.6603 18 14 2.9250 -3.7074 5.6905 19 1 1.7099 -4.5599 5.6500 20 1 3.9594 -4.3588 6.5336 21 1 2.5810 -2.3821 6.2655 22 8 2.0129 -0.6849 1.1679 23 1 -0.3633 0.5186 0.8872 24 1 -0.3633 0.5091 -0.8928 25 1 -0.3633 -1.0276 0.0055 26 1 2.1239 2.1040 -2.0881 27 1 0.4602 1.9167 -1.4394 28 1 0.7902 4.2967 -1.2194 29 1 2.5200 4.0987 -0.8028 30 1 1.6508 4.2753 1.2862 31 1 0.5831 1.7320 1.5796 32 1 2.2334 2.2647 2.0000 33 1 3.8509 -1.5642 -0.7040 34 1 2.6016 -2.6822 -1.3384 35 1 3.5842 -3.6837 1.1712 36 1 4.2225 -2.0848 1.6233 37 1 5.3559 -4.2976 4.3404 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260253882.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:01 Heat of formation + Delta-G solvation = -114.277919 kcal Electronic energy + Delta-G solvation = -18324.104453 eV Core-core repulsion = 15486.209070 eV Total energy + Delta-G solvation = -2837.895383 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.75040 -39.19028 -36.18776 -35.27996 -33.76546 -31.64195 -30.25373 -29.02395 -28.33361 -25.18316 -24.04378 -22.62761 -22.01348 -20.51148 -18.66563 -17.97406 -17.79588 -17.52683 -16.66879 -16.55487 -15.73167 -15.27230 -14.75302 -14.52177 -14.32869 -14.02490 -13.94092 -13.67093 -13.29313 -13.13272 -13.09577 -12.94120 -12.70203 -12.50281 -12.37549 -12.19755 -12.14522 -11.70412 -11.61481 -11.19537 -10.94605 -10.61129 -10.45316 -9.41630 -8.22791 -6.31811 1.38933 1.41782 1.49703 2.39498 2.44608 2.95071 3.12655 3.27839 3.63545 3.74891 3.77928 3.82876 4.03801 4.08734 4.25301 4.31882 4.39037 4.46141 4.56088 4.66890 4.70576 4.78690 4.86934 4.91280 5.04326 5.06749 5.08282 5.14739 5.32304 5.38816 5.52915 5.73175 5.83333 6.14977 6.27987 6.43162 6.79261 7.35848 8.88875 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.030426 B = 0.006338 C = 0.005721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.037312 B = 4416.442025 C = 4893.153842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.251 3.749 3 C -0.112 4.112 4 H 0.065 0.935 5 C -0.113 4.113 6 C 0.047 3.953 7 N -0.685 5.685 8 C 0.057 3.943 9 O -0.387 6.387 10 C 0.028 3.972 11 C 0.063 3.937 12 H 0.074 0.926 13 C 0.035 3.965 14 C -0.532 4.532 15 H 0.054 0.946 16 C 0.004 3.996 17 N -0.931 5.931 18 Si 0.962 3.038 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.273 1.273 22 O -0.379 6.379 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.347 0.653 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.067 0.933 34 H 0.120 0.880 35 H 0.024 0.976 36 H -0.002 1.002 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.050 11.580 -9.540 16.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.174 3.826 3 C -0.132 4.132 4 H 0.083 0.917 5 C -0.151 4.151 6 C -0.082 4.082 7 N -0.315 5.315 8 C -0.072 4.072 9 O -0.308 6.308 10 C -0.048 4.048 11 C 0.006 3.994 12 H 0.092 0.908 13 C -0.002 4.002 14 C -0.570 4.570 15 H 0.073 0.927 16 C -0.194 4.194 17 N -0.571 5.571 18 Si 0.787 3.213 19 H -0.190 1.190 20 H -0.206 1.206 21 H -0.198 1.198 22 O -0.301 6.301 23 H 0.099 0.901 24 H 0.110 0.890 25 H 0.076 0.924 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.115 0.885 29 H 0.069 0.931 30 H 0.163 0.837 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.138 0.862 35 H 0.043 0.957 36 H 0.017 0.983 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.607 11.544 -9.566 16.812 hybrid contribution 1.240 -0.565 1.160 1.790 sum -6.367 10.979 -8.407 15.223 Atomic orbital electron populations 1.22435 0.92828 1.03031 1.04093 1.23420 0.93702 0.90368 0.75102 1.22636 1.00062 0.92641 0.97831 0.91655 1.22813 1.02266 0.93904 0.96110 1.22949 1.00274 0.96481 0.88474 1.61925 1.61499 1.03867 1.04248 1.22559 0.99709 0.89489 0.95469 1.88750 1.69707 1.42322 1.30018 1.24288 0.95991 0.89708 0.94810 1.23985 0.98992 0.83567 0.92880 0.90763 1.18975 0.92599 0.94507 0.94168 1.21399 1.00678 1.38836 0.96090 0.92745 1.25874 0.95081 0.95153 1.03314 1.70059 1.09558 1.41849 1.35667 0.85545 0.78289 0.78540 0.78966 1.18975 1.20552 1.19824 1.89353 1.85904 1.22796 1.31999 0.90130 0.89030 0.92385 0.89947 0.89624 0.88544 0.93092 0.83650 0.90553 0.93701 0.91446 0.86250 0.95745 0.98333 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.77 8.61 71.98 0.62 -4.15 16 2 C 0.25 8.45 0.84 30.60 0.03 8.48 16 3 C -0.11 -3.29 2.77 -9.61 -0.03 -3.32 16 4 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 5 C -0.11 -2.55 6.22 32.05 0.20 -2.36 16 6 C 0.05 0.90 7.57 86.85 0.66 1.56 16 7 N -0.69 -15.40 7.39 -504.04 -3.73 -19.13 16 8 C 0.06 1.60 6.78 86.65 0.59 2.19 16 9 O -0.39 -13.07 10.64 -126.22 -1.34 -14.41 16 10 C 0.03 0.98 7.54 72.64 0.55 1.53 16 11 C 0.06 2.66 3.42 31.25 0.11 2.77 16 12 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 13 C 0.03 1.81 4.77 29.85 0.14 1.95 16 14 C -0.53 -30.57 8.96 25.60 0.23 -30.34 16 15 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 16 C 0.00 0.21 5.46 84.65 0.46 0.68 16 17 N -0.93 -56.17 13.29 21.45 0.28 -55.88 16 18 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 19 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 21 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 22 O -0.38 -16.26 10.35 -126.22 -1.31 -17.57 16 23 H 0.08 2.26 6.00 -2.39 -0.01 2.24 16 24 H 0.09 2.20 6.09 -2.38 -0.01 2.18 16 25 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.09 1.87 5.76 -2.39 -0.01 1.85 16 28 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.35 6.65 8.91 -89.69 -0.80 5.85 16 31 H 0.08 2.28 5.61 -2.39 -0.01 2.27 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 2.40 8.03 -2.39 -0.02 2.38 16 34 H 0.12 3.48 8.14 -2.38 -0.02 3.46 16 35 H 0.02 1.30 8.14 -2.39 -0.02 1.29 16 36 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 37 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -64.70 293.36 -0.25 -64.96 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.26 Total: 16.24 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 3.55 Total: -21.01 kcal Atomic # 7 Polarization: -71.57 SS G_CDS: -3.44 Total: -75.01 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -2.65 Total: -31.98 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -64.70 -0.25 -64.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260253882.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.320 kcal (2) G-P(sol) polarization free energy of solvation -64.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds