Wall clock time and date at job start Mon Mar 30 2020 03:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.62590 * 2 1 4 4 H 1.08997 * 110.87745 * 305.82528 * 3 2 1 5 5 C 1.55400 * 111.02707 * 69.58985 * 3 2 1 6 6 C 1.54319 * 102.90269 * 153.63425 * 5 3 2 7 7 N 1.47447 * 107.36582 * 337.89344 * 6 5 3 8 8 C 1.47840 * 108.57191 * 358.92703 * 7 6 5 9 9 O 1.43750 * 109.63367 * 239.60312 * 2 1 3 10 10 C 1.44781 * 104.81576 * 264.58329 * 9 2 1 11 11 C 1.54914 * 101.72423 * 323.89855 * 10 9 2 12 12 H 1.09001 * 110.69391 * 277.16236 * 11 10 9 13 13 C 1.53002 * 110.69416 * 154.13102 * 11 10 9 14 14 C 1.50696 * 109.46614 * 175.00051 * 13 11 10 15 15 H 1.08002 * 120.00479 * 0.02562 * 14 13 11 16 16 C 1.37883 * 119.99679 * 179.97438 * 14 13 11 17 17 N 1.31510 * 119.99719 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99826 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47271 * 60.00134 * 18 16 14 20 20 H 1.48500 * 109.46729 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47464 * 299.99853 * 18 16 14 22 22 O 1.43366 * 109.50636 * 120.31406 * 2 1 3 23 23 H 1.09007 * 109.46765 * 54.90658 * 1 2 3 24 24 H 1.09001 * 109.47022 * 174.90364 * 1 2 3 25 25 H 1.08994 * 109.47477 * 294.90458 * 1 2 3 26 26 H 1.09001 * 110.67990 * 35.33228 * 5 3 2 27 27 H 1.08998 * 110.84380 * 272.01435 * 5 3 2 28 28 H 1.08995 * 109.88916 * 218.41243 * 6 5 3 29 29 H 1.09000 * 109.88808 * 97.37831 * 6 5 3 30 30 H 1.00906 * 110.99867 * 121.20070 * 7 6 5 31 31 H 1.09002 * 110.37433 * 142.92307 * 8 7 6 32 32 H 1.08992 * 110.37784 * 265.15885 * 8 7 6 33 33 H 1.09006 * 110.97722 * 82.00902 * 10 9 2 34 34 H 1.09001 * 110.97603 * 205.78748 * 10 9 2 35 35 H 1.08996 * 109.46901 * 294.99738 * 13 11 10 36 36 H 1.08994 * 109.47209 * 55.00325 * 13 11 10 37 37 H 0.97011 * 119.99569 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 1 1.6129 2.0072 -0.8257 5 6 1.7547 2.1362 1.3595 6 6 2.8617 3.2083 1.4406 7 7 3.9579 2.7770 0.5540 8 6 3.5918 1.4782 -0.0500 9 8 2.0130 -0.6851 -1.1678 10 6 2.2618 -2.0409 -0.7252 11 6 2.7837 -1.8111 0.7151 12 1 3.8466 -1.5697 0.7058 13 6 2.5176 -3.0386 1.5889 14 6 3.1429 -2.8349 2.9448 15 1 3.6764 -1.9213 3.1618 16 6 3.0331 -3.8147 3.9088 17 7 2.3822 -4.9266 3.6450 18 14 3.8088 -3.5626 5.5893 19 1 3.2196 -2.3602 6.2312 20 1 3.5494 -4.7534 6.4378 21 1 5.2737 -3.3737 5.4351 22 8 2.0087 -0.6821 1.1666 23 1 -0.3633 0.5909 -0.8409 24 1 -0.3633 -1.0236 -0.0913 25 1 -0.3634 0.4327 0.9320 26 1 1.8448 1.4263 2.1816 27 1 0.7684 2.6002 1.3558 28 1 3.2241 3.2903 2.4653 29 1 2.4716 4.1700 1.1073 30 1 4.1404 3.4684 -0.1581 31 1 3.9394 1.4281 -1.0819 32 1 4.0116 0.6575 0.5314 33 1 1.3411 -2.6243 -0.7183 34 1 3.0209 -2.5201 -1.3435 35 1 1.4425 -3.1779 1.7018 36 1 2.9509 -3.9208 1.1178 37 1 2.3047 -5.6157 4.3233 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260253888.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:03 Heat of formation + Delta-G solvation = -97.622540 kcal Electronic energy + Delta-G solvation = -18526.477673 eV Core-core repulsion = 15689.304522 eV Total energy + Delta-G solvation = -2837.173151 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.36643 -37.82356 -34.58671 -33.40119 -32.16571 -29.85031 -28.90941 -28.27869 -26.50905 -23.28816 -22.27764 -21.27126 -20.48593 -19.68651 -17.22674 -16.59586 -16.20255 -15.86099 -14.83900 -14.48308 -14.35803 -13.73104 -13.49882 -13.29386 -12.79176 -12.59249 -12.40535 -12.17300 -11.89071 -11.81782 -11.58681 -11.30051 -11.14780 -11.04852 -10.88810 -10.58189 -10.52522 -10.43032 -9.70013 -9.56241 -9.12948 -8.87250 -8.38460 -8.36335 -6.01313 -4.02212 3.36042 3.39368 3.43561 3.87303 4.24301 4.46402 4.49692 4.72020 4.94532 5.05642 5.25657 5.32746 5.36253 5.43609 5.53614 5.57985 5.62692 5.75219 5.78577 5.81928 5.97881 6.04987 6.05839 6.21194 6.29064 6.35725 6.42343 6.58070 6.77121 6.90242 7.40382 7.44887 7.59075 7.86165 7.96134 8.36553 9.01766 9.61123 11.10254 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.023968 B = 0.007543 C = 0.006432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.937163 B = 3711.005656 C = 4352.411269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.261 3.739 3 C -0.120 4.120 4 H 0.080 0.920 5 C -0.131 4.131 6 C 0.049 3.951 7 N -0.686 5.686 8 C 0.060 3.940 9 O -0.384 6.384 10 C 0.016 3.984 11 C 0.063 3.937 12 H 0.072 0.928 13 C 0.025 3.975 14 C -0.511 4.511 15 H 0.058 0.942 16 C 0.057 3.943 17 N -0.899 5.899 18 Si 0.894 3.106 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.276 1.276 22 O -0.354 6.354 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.047 0.953 30 H 0.332 0.668 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.027 0.973 36 H 0.033 0.967 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.808 12.146 -8.548 14.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.183 3.817 3 C -0.140 4.140 4 H 0.098 0.902 5 C -0.169 4.169 6 C -0.080 4.080 7 N -0.313 5.313 8 C -0.069 4.069 9 O -0.305 6.305 10 C -0.060 4.060 11 C 0.007 3.993 12 H 0.090 0.910 13 C -0.012 4.012 14 C -0.549 4.549 15 H 0.076 0.924 16 C -0.144 4.144 17 N -0.538 5.538 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.202 1.202 22 O -0.275 6.275 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.111 0.889 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.147 0.853 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.444 11.868 -7.936 14.349 hybrid contribution -0.410 0.155 0.226 0.493 sum -1.854 12.023 -7.710 14.402 Atomic orbital electron populations 1.22339 0.94718 1.03040 1.02394 1.22982 0.92251 0.90026 0.76413 1.23046 0.97970 0.94670 0.98360 0.90195 1.22820 0.98191 0.98108 0.97800 1.22603 0.90220 0.96659 0.98519 1.61720 1.41775 1.05016 1.22785 1.22835 0.92558 0.92669 0.98834 1.89111 1.86179 1.22642 1.32552 1.24560 1.01209 0.83797 0.96453 1.24080 0.94891 0.88493 0.91885 0.91004 1.19249 0.98272 0.89487 0.94228 1.21074 1.34098 1.02592 0.97142 0.92368 1.24989 0.95442 0.95185 0.98809 1.69943 1.42159 1.07164 1.34548 0.86619 0.79812 0.77479 0.83903 1.20183 1.21354 1.20197 1.89010 1.69784 1.41737 1.26978 0.91796 0.91741 0.90919 0.88913 0.91314 0.90688 0.93425 0.85284 0.91639 0.89524 0.91035 0.88187 0.95516 0.94914 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 9.01 37.16 0.33 -2.17 16 2 C 0.26 4.40 0.78 -26.73 -0.02 4.38 16 3 C -0.12 -1.74 2.65 -88.34 -0.23 -1.98 16 4 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 5 C -0.13 -1.81 5.81 -24.77 -0.14 -1.96 16 6 C 0.05 0.62 7.57 -2.83 -0.02 0.60 16 7 N -0.69 -9.23 7.39 -110.79 -0.82 -10.05 16 8 C 0.06 0.89 6.67 -2.30 -0.02 0.88 16 9 O -0.38 -6.58 10.65 -59.04 -0.63 -7.21 16 10 C 0.02 0.28 7.35 38.17 0.28 0.56 16 11 C 0.06 1.32 3.23 -25.72 -0.08 1.24 16 12 H 0.07 1.51 7.65 -51.93 -0.40 1.11 16 13 C 0.02 0.62 4.73 -27.88 -0.13 0.49 16 14 C -0.51 -14.45 9.04 -34.44 -0.31 -14.77 16 15 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 18 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 O -0.35 -7.32 8.73 -59.04 -0.52 -7.83 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.06 1.01 8.13 -51.93 -0.42 0.58 16 25 H 0.07 1.05 7.79 -51.93 -0.40 0.65 16 26 H 0.09 1.55 7.08 -51.93 -0.37 1.18 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.33 3.65 8.91 -39.29 -0.35 3.30 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.55 6.68 -51.93 -0.35 1.20 16 33 H 0.07 1.22 8.05 -51.93 -0.42 0.81 16 34 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 296.83 15.07 4.47 4.47 Total: -1.00 -30.38 296.83 -8.27 -38.65 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.05 Total: 2.28 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -0.44 Total: -11.21 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: -0.08 Total: -36.09 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -1.14 Total: -15.04 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.38 -8.27 -38.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260253888.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.974 kcal (2) G-P(sol) polarization free energy of solvation -30.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds