Wall clock time and date at job start Mon Mar 30 2020 03:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.62590 * 2 1 4 4 H 1.08997 * 110.87745 * 305.82528 * 3 2 1 5 5 C 1.55400 * 111.02707 * 69.58985 * 3 2 1 6 6 C 1.54319 * 102.90269 * 153.63425 * 5 3 2 7 7 N 1.47447 * 107.36582 * 337.89344 * 6 5 3 8 8 C 1.47840 * 108.57191 * 358.92703 * 7 6 5 9 9 O 1.43750 * 109.63367 * 239.60312 * 2 1 3 10 10 C 1.44781 * 104.81576 * 264.58329 * 9 2 1 11 11 C 1.54914 * 101.72423 * 323.89855 * 10 9 2 12 12 H 1.09001 * 110.69391 * 277.16236 * 11 10 9 13 13 C 1.53002 * 110.69416 * 154.13102 * 11 10 9 14 14 C 1.50696 * 109.46614 * 175.00051 * 13 11 10 15 15 H 1.08002 * 120.00479 * 0.02562 * 14 13 11 16 16 C 1.37883 * 119.99679 * 179.97438 * 14 13 11 17 17 N 1.31510 * 119.99719 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99826 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47271 * 60.00134 * 18 16 14 20 20 H 1.48500 * 109.46729 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47464 * 299.99853 * 18 16 14 22 22 O 1.43366 * 109.50636 * 120.31406 * 2 1 3 23 23 H 1.09007 * 109.46765 * 54.90658 * 1 2 3 24 24 H 1.09001 * 109.47022 * 174.90364 * 1 2 3 25 25 H 1.08994 * 109.47477 * 294.90458 * 1 2 3 26 26 H 1.09001 * 110.67990 * 35.33228 * 5 3 2 27 27 H 1.08998 * 110.84380 * 272.01435 * 5 3 2 28 28 H 1.08995 * 109.88916 * 218.41243 * 6 5 3 29 29 H 1.09000 * 109.88808 * 97.37831 * 6 5 3 30 30 H 1.00906 * 110.99867 * 121.20070 * 7 6 5 31 31 H 1.09002 * 110.37433 * 142.92307 * 8 7 6 32 32 H 1.08992 * 110.37784 * 265.15885 * 8 7 6 33 33 H 1.09006 * 110.97722 * 82.00902 * 10 9 2 34 34 H 1.09001 * 110.97603 * 205.78748 * 10 9 2 35 35 H 1.08996 * 109.46901 * 294.99738 * 13 11 10 36 36 H 1.08994 * 109.47209 * 55.00325 * 13 11 10 37 37 H 0.97011 * 119.99569 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 1 1.6129 2.0072 -0.8257 5 6 1.7547 2.1362 1.3595 6 6 2.8617 3.2083 1.4406 7 7 3.9579 2.7770 0.5540 8 6 3.5918 1.4782 -0.0500 9 8 2.0130 -0.6851 -1.1678 10 6 2.2618 -2.0409 -0.7252 11 6 2.7837 -1.8111 0.7151 12 1 3.8466 -1.5697 0.7058 13 6 2.5176 -3.0386 1.5889 14 6 3.1429 -2.8349 2.9448 15 1 3.6764 -1.9213 3.1618 16 6 3.0331 -3.8147 3.9088 17 7 2.3822 -4.9266 3.6450 18 14 3.8088 -3.5626 5.5893 19 1 3.2196 -2.3602 6.2312 20 1 3.5494 -4.7534 6.4378 21 1 5.2737 -3.3737 5.4351 22 8 2.0087 -0.6821 1.1666 23 1 -0.3633 0.5909 -0.8409 24 1 -0.3633 -1.0236 -0.0913 25 1 -0.3634 0.4327 0.9320 26 1 1.8448 1.4263 2.1816 27 1 0.7684 2.6002 1.3558 28 1 3.2241 3.2903 2.4653 29 1 2.4716 4.1700 1.1073 30 1 4.1404 3.4684 -0.1581 31 1 3.9394 1.4281 -1.0819 32 1 4.0116 0.6575 0.5314 33 1 1.3411 -2.6243 -0.7183 34 1 3.0209 -2.5201 -1.3435 35 1 1.4425 -3.1779 1.7018 36 1 2.9509 -3.9208 1.1178 37 1 2.3047 -5.6157 4.3233 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260253888.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:02 Heat of formation + Delta-G solvation = -118.977886 kcal Electronic energy + Delta-G solvation = -18527.403710 eV Core-core repulsion = 15689.304522 eV Total energy + Delta-G solvation = -2838.099188 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.75857 -38.98707 -36.18422 -35.24466 -33.76977 -31.51669 -30.06435 -29.43320 -28.28470 -25.16791 -23.53415 -22.60715 -22.01377 -20.92141 -18.80906 -18.24024 -17.67687 -17.23294 -16.66088 -15.96775 -15.81918 -15.07577 -15.00154 -14.51166 -14.24584 -13.94230 -13.79496 -13.60972 -13.49632 -13.29618 -13.12278 -13.03436 -12.63453 -12.44425 -12.35851 -12.22103 -12.02235 -11.74202 -11.58379 -11.18377 -10.94541 -10.60021 -10.41949 -9.41879 -8.22213 -6.30696 1.38295 1.40953 1.49010 2.39801 2.49719 2.95974 3.13411 3.35362 3.54148 3.74955 3.82455 3.93766 4.05989 4.16690 4.33404 4.37334 4.45444 4.48424 4.54828 4.65841 4.70008 4.75617 4.85280 4.94859 5.03032 5.09011 5.11728 5.17688 5.32739 5.39793 5.57649 5.74371 5.84115 6.17658 6.35138 6.55235 6.80479 7.36728 8.89353 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.023968 B = 0.007543 C = 0.006432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.937163 B = 3711.005656 C = 4352.411269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.250 3.750 3 C -0.115 4.115 4 H 0.106 0.894 5 C -0.129 4.129 6 C 0.051 3.949 7 N -0.695 5.695 8 C 0.063 3.937 9 O -0.380 6.380 10 C 0.026 3.974 11 C 0.068 3.932 12 H 0.066 0.934 13 C 0.031 3.969 14 C -0.531 4.531 15 H 0.050 0.950 16 C 0.005 3.995 17 N -0.930 5.930 18 Si 0.959 3.041 19 H -0.273 1.273 20 H -0.279 1.279 21 H -0.267 1.267 22 O -0.379 6.379 23 H 0.092 0.908 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.349 0.651 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.126 0.874 35 H -0.001 1.001 36 H 0.021 0.979 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.842 13.945 -9.197 16.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.173 3.827 3 C -0.135 4.135 4 H 0.124 0.876 5 C -0.167 4.167 6 C -0.078 4.078 7 N -0.325 5.325 8 C -0.066 4.066 9 O -0.301 6.301 10 C -0.050 4.050 11 C 0.011 3.989 12 H 0.084 0.916 13 C -0.006 4.006 14 C -0.569 4.569 15 H 0.069 0.931 16 C -0.193 4.193 17 N -0.571 5.571 18 Si 0.784 3.216 19 H -0.198 1.198 20 H -0.204 1.204 21 H -0.192 1.192 22 O -0.301 6.301 23 H 0.111 0.889 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.111 0.889 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.166 0.834 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.144 0.856 35 H 0.018 0.982 36 H 0.039 0.961 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.476 13.687 -8.600 16.232 hybrid contribution -0.418 -0.379 0.416 0.701 sum -1.894 13.308 -8.184 15.737 Atomic orbital electron populations 1.22351 0.93276 1.02910 1.03761 1.23382 0.93372 0.90831 0.75107 1.23069 0.97648 0.93282 0.99537 0.87587 1.22780 1.00074 0.97760 0.96103 1.22613 0.89502 0.97603 0.98101 1.61588 1.42362 1.04980 1.23527 1.22664 0.92834 0.92343 0.98781 1.89102 1.86260 1.22275 1.32488 1.24478 1.01840 0.84269 0.94453 1.23756 0.94887 0.87088 0.93166 0.91581 1.19058 0.95968 0.91401 0.94132 1.21410 1.34301 1.02372 0.98795 0.93132 1.25841 0.95881 0.94855 1.02737 1.70051 1.43192 1.07925 1.35899 0.85591 0.79240 0.77631 0.79163 1.19828 1.20410 1.19188 1.88978 1.69896 1.41829 1.29366 0.88917 0.92983 0.90707 0.92613 0.88916 0.91669 0.90162 0.83368 0.90432 0.93280 0.90940 0.85622 0.98222 0.96066 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.70 9.01 71.98 0.65 -4.05 16 2 C 0.25 8.17 0.78 30.59 0.02 8.19 16 3 C -0.12 -3.11 2.65 -9.31 -0.02 -3.14 16 4 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 5 C -0.13 -3.37 5.81 31.87 0.19 -3.18 16 6 C 0.05 1.17 7.57 86.65 0.66 1.82 16 7 N -0.70 -17.40 7.39 -504.43 -3.73 -21.13 16 8 C 0.06 1.81 6.67 86.78 0.58 2.39 16 9 O -0.38 -12.45 10.65 -126.22 -1.34 -13.79 16 10 C 0.03 0.88 7.35 72.64 0.53 1.41 16 11 C 0.07 2.90 3.23 31.25 0.10 3.00 16 12 H 0.07 2.86 7.65 -2.39 -0.02 2.85 16 13 C 0.03 1.65 4.73 29.85 0.14 1.79 16 14 C -0.53 -30.89 9.04 25.60 0.23 -30.66 16 15 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 16 C 0.00 0.28 5.46 84.66 0.46 0.74 16 17 N -0.93 -56.44 13.29 21.45 0.28 -56.15 16 18 Si 0.96 45.42 29.54 68.60 2.03 47.45 16 19 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 22 O -0.38 -15.98 8.73 -126.22 -1.10 -17.08 16 23 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 24 H 0.05 1.59 8.13 -2.39 -0.02 1.57 16 25 H 0.07 2.07 7.79 -2.39 -0.02 2.05 16 26 H 0.06 1.88 7.08 -2.39 -0.02 1.86 16 27 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.35 6.69 8.91 -89.69 -0.80 5.89 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.05 1.78 6.68 -2.39 -0.02 1.76 16 33 H 0.07 2.46 8.05 -2.38 -0.02 2.44 16 34 H 0.13 3.61 8.14 -2.39 -0.02 3.59 16 35 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 36 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -66.21 296.83 -0.08 -66.29 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.25 Total: 16.09 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: 3.54 Total: -21.67 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -3.44 Total: -77.29 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -2.45 Total: -30.87 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -66.21 -0.08 -66.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260253888.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.688 kcal (2) G-P(sol) polarization free energy of solvation -66.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds