Wall clock time and date at job start Mon Mar 30 2020 03:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.62876 * 2 1 4 4 H 1.09005 * 110.63990 * 63.54370 * 3 2 1 5 5 C 1.54593 * 110.72218 * 300.39745 * 3 2 1 6 6 C 1.53999 * 105.13482 * 219.68048 * 5 3 2 7 7 N 1.47900 * 107.05751 * 358.77551 * 6 5 3 8 8 C 1.48527 * 105.82192 * 25.32728 * 7 6 5 9 9 O 1.43364 * 109.63223 * 239.76261 * 2 1 3 10 10 C 1.44203 * 107.28479 * 240.78713 * 9 2 1 11 11 C 1.54914 * 103.07497 * 21.43677 * 10 9 2 12 12 H 1.09002 * 110.97939 * 82.54520 * 11 10 9 13 13 C 1.53003 * 111.00866 * 206.31474 * 11 10 9 14 14 C 1.50694 * 109.47055 * 181.86330 * 13 11 10 15 15 H 1.08001 * 120.00321 * 0.02562 * 14 13 11 16 16 C 1.37878 * 120.00026 * 179.97438 * 14 13 11 17 17 N 1.31515 * 120.00244 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 119.99787 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47107 * 89.99427 * 18 16 14 20 20 H 1.48499 * 109.46727 * 209.99607 * 18 16 14 21 21 H 1.48500 * 109.46875 * 329.99359 * 18 16 14 22 22 O 1.43744 * 109.63208 * 120.39094 * 2 1 3 23 23 H 1.09007 * 109.47441 * 300.30760 * 1 2 3 24 24 H 1.09000 * 109.47225 * 60.30590 * 1 2 3 25 25 H 1.09005 * 109.47257 * 180.30654 * 1 2 3 26 26 H 1.08999 * 110.30867 * 338.59189 * 5 3 2 27 27 H 1.08997 * 110.31313 * 100.76501 * 5 3 2 28 28 H 1.09002 * 109.91475 * 118.13163 * 6 5 3 29 29 H 1.09000 * 109.91844 * 239.22238 * 6 5 3 30 30 H 1.00906 * 110.99545 * 264.81173 * 7 6 5 31 31 H 1.08997 * 110.66567 * 202.35704 * 8 7 6 32 32 H 1.09007 * 110.66705 * 79.22982 * 8 7 6 33 33 H 1.08996 * 110.69511 * 263.03554 * 10 9 2 34 34 H 1.09005 * 110.69115 * 139.83477 * 10 9 2 35 35 H 1.08998 * 109.47035 * 301.86969 * 13 11 10 36 36 H 1.09005 * 109.46758 * 61.86497 * 13 11 10 37 37 H 0.97005 * 119.99812 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0439 1.4412 0.0000 4 1 1.7449 1.9557 0.9133 5 6 1.5386 2.2022 -1.2472 6 6 2.7307 3.0641 -1.7026 7 7 3.8316 2.8227 -0.7450 8 6 3.5831 1.4744 -0.1738 9 8 2.0116 -0.6800 -1.1666 10 6 2.7885 -1.8078 -0.7150 11 6 2.2652 -2.0400 0.7245 12 1 1.3457 -2.6253 0.7158 13 6 3.3303 -2.7114 1.5938 14 6 2.7706 -2.9620 2.9702 15 1 1.7564 -2.6718 3.2019 16 6 3.5528 -3.5627 3.9337 17 7 3.0641 -3.7819 5.1349 18 14 5.3068 -4.0652 3.5329 19 1 6.2265 -2.9409 3.8412 20 1 5.6810 -5.2487 4.3481 21 1 5.4069 -4.4056 2.0910 22 8 2.0129 -0.6849 1.1679 23 1 -0.3634 0.5186 0.8873 24 1 -0.3634 0.5091 -0.8927 25 1 -0.3634 -1.0277 0.0055 26 1 1.2585 1.4991 -2.0316 27 1 0.6912 2.8361 -0.9860 28 1 3.0397 2.7700 -2.7057 29 1 2.4517 4.1178 -1.6943 30 1 3.8419 3.5258 -0.0213 31 1 4.0815 1.3669 0.7896 32 1 3.9089 0.6975 -0.8655 33 1 3.8508 -1.5641 -0.7041 34 1 2.5989 -2.6809 -1.3394 35 1 3.6231 -3.6593 1.1423 36 1 4.2014 -2.0604 1.6687 37 1 3.6146 -4.2042 5.8128 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260253893.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:04 Heat of formation + Delta-G solvation = -93.438706 kcal Electronic energy + Delta-G solvation = -18472.730716 eV Core-core repulsion = 15635.738989 eV Total energy + Delta-G solvation = -2836.991727 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.49758 -37.96981 -34.66081 -33.48635 -32.24596 -30.31935 -28.90324 -28.24463 -26.85135 -23.09093 -22.42720 -21.58401 -20.58005 -19.45017 -17.25473 -16.76115 -16.42800 -15.97288 -15.13318 -14.55275 -14.26473 -13.90350 -13.58540 -13.52515 -12.92076 -12.67991 -12.62413 -12.13072 -12.06424 -11.91772 -11.80748 -11.43013 -11.34683 -11.19544 -10.94012 -10.59919 -10.54960 -10.12352 -9.70830 -9.60217 -9.35923 -9.13207 -8.58552 -8.57141 -6.06662 -4.05063 3.28434 3.35825 3.36389 3.81797 4.09363 4.41126 4.44716 4.64666 4.89697 5.00483 5.12753 5.19112 5.26699 5.39602 5.44498 5.52120 5.59349 5.64579 5.69038 5.72745 5.86674 5.97080 5.99575 6.11325 6.15460 6.22540 6.28602 6.37716 6.52945 6.72608 6.94779 7.14618 7.34329 7.62015 7.72126 8.48880 8.98830 9.53567 11.06731 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032621 B = 0.006594 C = 0.006217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.131027 B = 4245.515432 C = 4503.033982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.260 3.740 3 C -0.124 4.124 4 H 0.087 0.913 5 C -0.141 4.141 6 C 0.044 3.956 7 N -0.677 5.677 8 C 0.053 3.947 9 O -0.383 6.383 10 C 0.017 3.983 11 C 0.069 3.931 12 H 0.076 0.924 13 C -0.007 4.007 14 C -0.514 4.514 15 H 0.075 0.925 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.266 1.266 22 O -0.349 6.349 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.334 0.666 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.034 0.966 36 H 0.024 0.976 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.025 10.068 -13.123 16.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.182 3.818 3 C -0.144 4.144 4 H 0.105 0.895 5 C -0.180 4.180 6 C -0.086 4.086 7 N -0.303 5.303 8 C -0.076 4.076 9 O -0.305 6.305 10 C -0.059 4.059 11 C 0.012 3.988 12 H 0.094 0.906 13 C -0.045 4.045 14 C -0.552 4.552 15 H 0.093 0.907 16 C -0.134 4.134 17 N -0.540 5.540 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.191 1.191 22 O -0.269 6.269 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.149 0.851 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.052 0.948 36 H 0.042 0.958 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.451 9.971 -13.439 16.796 hybrid contribution 0.004 -0.311 0.628 0.701 sum -1.448 9.660 -12.810 16.110 Atomic orbital electron populations 1.22363 0.94559 1.03170 1.02476 1.23037 0.92296 0.90181 0.76326 1.22985 0.98092 0.94455 0.98908 0.89492 1.22772 0.98578 0.98894 0.97741 1.22704 0.89398 0.98702 0.97773 1.62730 1.44425 1.04303 1.18817 1.23094 0.92873 0.91458 1.00163 1.88771 1.69549 1.42275 1.29873 1.24391 0.96288 0.88808 0.96402 1.23980 0.99875 0.83619 0.91300 0.90607 1.19638 0.93556 0.95141 0.96122 1.20961 1.01408 1.39213 0.93636 0.90716 1.24999 0.98175 0.95318 0.94878 1.69907 1.37012 1.43546 1.03488 0.86818 0.85473 0.78451 0.78777 1.20173 1.21266 1.19069 1.89408 1.85366 1.22505 1.29670 0.90975 0.91456 0.91778 0.90242 0.91633 0.90751 0.91937 0.85089 0.90264 0.89555 0.90974 0.88943 0.94775 0.95760 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 8.96 37.15 0.33 -2.09 16 2 C 0.26 4.25 0.72 -26.73 -0.02 4.23 16 3 C -0.12 -1.76 2.73 -88.76 -0.24 -2.01 16 4 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 5 C -0.14 -1.65 5.41 -25.37 -0.14 -1.78 16 6 C 0.04 0.49 7.52 -2.75 -0.02 0.47 16 7 N -0.68 -8.53 7.51 -110.09 -0.83 -9.36 16 8 C 0.05 0.78 6.80 -1.91 -0.01 0.77 16 9 O -0.38 -6.27 9.14 -59.04 -0.54 -6.81 16 10 C 0.02 0.29 7.25 38.17 0.28 0.56 16 11 C 0.07 1.38 3.39 -25.72 -0.09 1.30 16 12 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 13 C -0.01 -0.17 3.83 -27.88 -0.11 -0.28 16 14 C -0.51 -14.59 9.57 -34.44 -0.33 -14.92 16 15 H 0.07 2.32 7.99 -52.49 -0.42 1.90 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 18 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 22 O -0.35 -7.16 10.48 -59.04 -0.62 -7.78 16 23 H 0.07 1.01 8.14 -51.92 -0.42 0.58 16 24 H 0.07 0.83 7.06 -51.93 -0.37 0.46 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.08 0.99 6.97 -51.93 -0.36 0.63 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.33 3.68 8.92 -39.29 -0.35 3.33 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.09 1.38 6.50 -51.93 -0.34 1.04 16 33 H 0.07 1.15 7.65 -51.93 -0.40 0.76 16 34 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.03 0.77 7.20 -51.93 -0.37 0.39 16 36 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 292.40 15.07 4.41 4.41 Total: -1.00 -30.87 292.40 -7.89 -38.76 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.97 Total: 2.92 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -0.44 Total: -11.90 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: -0.05 Total: -36.32 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -1.16 Total: -14.59 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.87 -7.89 -38.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260253893.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.680 kcal (2) G-P(sol) polarization free energy of solvation -30.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds