Wall clock time and date at job start Mon Mar 30 2020 03:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.62876 * 2 1 4 4 H 1.09005 * 110.63990 * 63.54370 * 3 2 1 5 5 C 1.54593 * 110.72218 * 300.39745 * 3 2 1 6 6 C 1.53999 * 105.13482 * 219.68048 * 5 3 2 7 7 N 1.47900 * 107.05751 * 358.77551 * 6 5 3 8 8 C 1.48527 * 105.82192 * 25.32728 * 7 6 5 9 9 O 1.43364 * 109.63223 * 239.76261 * 2 1 3 10 10 C 1.44203 * 107.28479 * 240.78713 * 9 2 1 11 11 C 1.54914 * 103.07497 * 21.43677 * 10 9 2 12 12 H 1.09002 * 110.97939 * 82.54520 * 11 10 9 13 13 C 1.53003 * 111.00866 * 206.31474 * 11 10 9 14 14 C 1.50694 * 109.47055 * 181.86330 * 13 11 10 15 15 H 1.08001 * 120.00321 * 0.02562 * 14 13 11 16 16 C 1.37878 * 120.00026 * 179.97438 * 14 13 11 17 17 N 1.31515 * 120.00244 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 119.99787 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47107 * 89.99427 * 18 16 14 20 20 H 1.48499 * 109.46727 * 209.99607 * 18 16 14 21 21 H 1.48500 * 109.46875 * 329.99359 * 18 16 14 22 22 O 1.43744 * 109.63208 * 120.39094 * 2 1 3 23 23 H 1.09007 * 109.47441 * 300.30760 * 1 2 3 24 24 H 1.09000 * 109.47225 * 60.30590 * 1 2 3 25 25 H 1.09005 * 109.47257 * 180.30654 * 1 2 3 26 26 H 1.08999 * 110.30867 * 338.59189 * 5 3 2 27 27 H 1.08997 * 110.31313 * 100.76501 * 5 3 2 28 28 H 1.09002 * 109.91475 * 118.13163 * 6 5 3 29 29 H 1.09000 * 109.91844 * 239.22238 * 6 5 3 30 30 H 1.00906 * 110.99545 * 264.81173 * 7 6 5 31 31 H 1.08997 * 110.66567 * 202.35704 * 8 7 6 32 32 H 1.09007 * 110.66705 * 79.22982 * 8 7 6 33 33 H 1.08996 * 110.69511 * 263.03554 * 10 9 2 34 34 H 1.09005 * 110.69115 * 139.83477 * 10 9 2 35 35 H 1.08998 * 109.47035 * 301.86969 * 13 11 10 36 36 H 1.09005 * 109.46758 * 61.86497 * 13 11 10 37 37 H 0.97005 * 119.99812 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0439 1.4412 0.0000 4 1 1.7449 1.9557 0.9133 5 6 1.5386 2.2022 -1.2472 6 6 2.7307 3.0641 -1.7026 7 7 3.8316 2.8227 -0.7450 8 6 3.5831 1.4744 -0.1738 9 8 2.0116 -0.6800 -1.1666 10 6 2.7885 -1.8078 -0.7150 11 6 2.2652 -2.0400 0.7245 12 1 1.3457 -2.6253 0.7158 13 6 3.3303 -2.7114 1.5938 14 6 2.7706 -2.9620 2.9702 15 1 1.7564 -2.6718 3.2019 16 6 3.5528 -3.5627 3.9337 17 7 3.0641 -3.7819 5.1349 18 14 5.3068 -4.0652 3.5329 19 1 6.2265 -2.9409 3.8412 20 1 5.6810 -5.2487 4.3481 21 1 5.4069 -4.4056 2.0910 22 8 2.0129 -0.6849 1.1679 23 1 -0.3634 0.5186 0.8873 24 1 -0.3634 0.5091 -0.8927 25 1 -0.3634 -1.0277 0.0055 26 1 1.2585 1.4991 -2.0316 27 1 0.6912 2.8361 -0.9860 28 1 3.0397 2.7700 -2.7057 29 1 2.4517 4.1178 -1.6943 30 1 3.8419 3.5258 -0.0213 31 1 4.0815 1.3669 0.7896 32 1 3.9089 0.6975 -0.8655 33 1 3.8508 -1.5641 -0.7041 34 1 2.5989 -2.6809 -1.3394 35 1 3.6231 -3.6593 1.1423 36 1 4.2014 -2.0604 1.6687 37 1 3.6146 -4.2042 5.8128 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260253893.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:04 Heat of formation + Delta-G solvation = -116.148711 kcal Electronic energy + Delta-G solvation = -18473.715496 eV Core-core repulsion = 15635.738989 eV Total energy + Delta-G solvation = -2837.976506 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.81744 -39.07096 -36.15373 -35.26395 -33.88811 -31.94094 -29.93888 -29.36331 -28.50980 -24.86119 -23.62232 -22.59702 -22.26603 -20.63690 -19.01895 -18.41134 -17.56092 -17.34109 -16.44356 -16.33809 -15.70907 -15.08511 -14.96211 -14.65371 -14.54967 -14.14911 -13.98711 -13.77603 -13.32711 -13.21637 -13.16956 -13.05045 -12.67943 -12.39768 -12.18956 -12.06474 -11.86176 -11.67264 -11.56498 -11.36554 -10.94617 -10.79246 -10.55279 -9.58871 -8.29437 -6.34055 1.36634 1.38132 1.49037 2.35166 2.48971 2.89247 3.07129 3.36145 3.55078 3.67628 3.82165 3.95141 4.04660 4.14131 4.28364 4.33675 4.47575 4.49719 4.53481 4.65402 4.65589 4.70585 4.85617 4.96248 4.99150 5.04979 5.06429 5.10490 5.17169 5.29537 5.37988 5.58814 5.73490 6.22311 6.28343 6.43688 6.71785 7.28564 8.87737 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032621 B = 0.006594 C = 0.006217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.131027 B = 4245.515432 C = 4503.033982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.252 3.748 3 C -0.125 4.125 4 H 0.083 0.917 5 C -0.132 4.132 6 C 0.045 3.955 7 N -0.681 5.681 8 C 0.056 3.944 9 O -0.381 6.381 10 C 0.028 3.972 11 C 0.066 3.934 12 H 0.067 0.933 13 C -0.004 4.004 14 C -0.524 4.524 15 H 0.026 0.974 16 C 0.003 3.997 17 N -0.952 5.952 18 Si 0.951 3.049 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.237 1.237 22 O -0.382 6.382 23 H 0.072 0.928 24 H 0.092 0.908 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.343 0.657 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.121 0.879 35 H 0.052 0.948 36 H 0.026 0.974 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.005 10.836 -15.482 18.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.175 3.825 3 C -0.145 4.145 4 H 0.102 0.898 5 C -0.171 4.171 6 C -0.085 4.085 7 N -0.308 5.308 8 C -0.074 4.074 9 O -0.303 6.303 10 C -0.048 4.048 11 C 0.009 3.991 12 H 0.085 0.915 13 C -0.041 4.041 14 C -0.562 4.562 15 H 0.044 0.956 16 C -0.193 4.193 17 N -0.593 5.593 18 Si 0.773 3.227 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.160 1.160 22 O -0.303 6.303 23 H 0.091 0.909 24 H 0.111 0.889 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.159 0.841 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.139 0.861 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.446 10.756 -15.827 19.141 hybrid contribution -0.417 -0.489 1.406 1.546 sum -0.863 10.266 -14.421 17.723 Atomic orbital electron populations 1.22364 0.93284 1.02954 1.03746 1.23354 0.93309 0.90776 0.75074 1.23006 0.97967 0.93376 1.00180 0.89845 1.22735 0.99480 0.98790 0.96053 1.22769 0.88467 1.00098 0.97135 1.62693 1.45306 1.03530 1.19258 1.22940 0.93011 0.92404 0.99028 1.88760 1.69675 1.42217 1.29606 1.24359 0.96472 0.89838 0.94150 1.23833 0.98730 0.83510 0.93047 0.91517 1.19552 0.94355 0.96312 0.93877 1.21242 0.99628 1.38787 0.96524 0.95566 1.26029 1.03529 0.95300 0.94466 1.70076 1.39222 1.45025 1.04957 0.85656 0.78695 0.78105 0.80205 1.19601 1.20880 1.15953 1.89374 1.85931 1.22841 1.32203 0.90930 0.88921 0.92771 0.90681 0.89619 0.90794 0.89425 0.84072 0.91948 0.90818 0.90314 0.86110 0.92992 0.95581 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.62 8.96 71.98 0.64 -3.97 16 2 C 0.25 8.03 0.72 30.59 0.02 8.05 16 3 C -0.12 -3.39 2.73 -9.59 -0.03 -3.41 16 4 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 5 C -0.13 -2.71 5.41 31.47 0.17 -2.54 16 6 C 0.04 0.86 7.52 86.45 0.65 1.51 16 7 N -0.68 -15.84 7.51 -502.22 -3.77 -19.61 16 8 C 0.06 1.58 6.80 86.65 0.59 2.17 16 9 O -0.38 -11.76 9.14 -126.22 -1.15 -12.92 16 10 C 0.03 0.86 7.25 72.64 0.53 1.39 16 11 C 0.07 2.62 3.39 31.25 0.11 2.72 16 12 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 13 C 0.00 -0.17 3.83 29.85 0.11 -0.06 16 14 C -0.52 -30.58 9.57 25.60 0.25 -30.34 16 15 H 0.03 1.72 7.99 -2.91 -0.02 1.70 16 16 C 0.00 0.19 5.47 84.65 0.46 0.65 16 17 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 18 Si 0.95 43.74 27.47 68.60 1.88 45.62 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.24 -9.69 6.54 99.48 0.65 -9.04 16 22 O -0.38 -15.88 10.48 -126.22 -1.32 -17.20 16 23 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 24 H 0.09 2.07 7.06 -2.39 -0.02 2.06 16 25 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.07 1.64 6.97 -2.39 -0.02 1.63 16 27 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.34 6.91 8.92 -89.69 -0.80 6.11 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.07 2.26 6.50 -2.38 -0.02 2.25 16 33 H 0.08 2.34 7.65 -2.39 -0.02 2.32 16 34 H 0.12 3.03 8.14 -2.38 -0.02 3.01 16 35 H 0.05 2.21 7.20 -2.39 -0.02 2.19 16 36 H 0.03 1.19 7.57 -2.38 -0.02 1.17 16 37 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 Total: -1.00 -68.39 292.40 -0.37 -68.76 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.19 Total: 19.34 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 3.50 Total: -23.83 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -3.47 Total: -79.78 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -2.48 Total: -30.11 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.62 kcal Total: -68.39 -0.37 -68.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260253893.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.389 kcal (2) G-P(sol) polarization free energy of solvation -68.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds