Wall clock time and date at job start Mon Mar 30 2020 03:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.62456 * 2 1 4 4 H 1.09000 * 110.87639 * 58.00131 * 3 2 1 5 5 C 1.55139 * 110.99184 * 294.11113 * 3 2 1 6 6 C 1.54318 * 103.01721 * 206.25884 * 5 3 2 7 7 N 1.47445 * 107.23618 * 22.28203 * 6 5 3 8 8 C 1.47836 * 108.56613 * 0.99125 * 7 6 5 9 9 O 1.43744 * 109.63542 * 239.75613 * 2 1 3 10 10 C 1.44786 * 104.81905 * 264.43267 * 9 2 1 11 11 C 1.54919 * 101.71830 * 323.89712 * 10 9 2 12 12 H 1.08992 * 110.84389 * 277.09208 * 11 10 9 13 13 C 1.53000 * 110.69248 * 153.95339 * 11 10 9 14 14 C 1.50703 * 109.46912 * 179.89023 * 13 11 10 15 15 H 1.07996 * 119.99751 * 0.02562 * 14 13 11 16 16 C 1.37877 * 120.00001 * 180.02562 * 14 13 11 17 17 N 1.31517 * 120.00094 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99955 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47171 * 89.99544 * 18 16 14 20 20 H 1.48500 * 109.46632 * 209.99795 * 18 16 14 21 21 H 1.48494 * 109.47053 * 329.99231 * 18 16 14 22 22 O 1.43371 * 109.62915 * 120.38712 * 2 1 3 23 23 H 1.08989 * 109.47270 * 300.31129 * 1 2 3 24 24 H 1.09003 * 109.46768 * 60.31174 * 1 2 3 25 25 H 1.09001 * 109.47015 * 180.30436 * 1 2 3 26 26 H 1.09000 * 110.70411 * 324.63677 * 5 3 2 27 27 H 1.08989 * 110.70625 * 87.87235 * 5 3 2 28 28 H 1.09003 * 109.88545 * 262.87161 * 6 5 3 29 29 H 1.09004 * 110.02263 * 141.76909 * 6 5 3 30 30 H 1.00896 * 110.99467 * 238.72276 * 7 6 5 31 31 H 1.08998 * 110.37646 * 217.07681 * 8 7 6 32 32 H 1.08997 * 110.47401 * 94.78048 * 8 7 6 33 33 H 1.09000 * 110.98414 * 205.79094 * 10 9 2 34 34 H 1.09002 * 110.97322 * 81.99989 * 10 9 2 35 35 H 1.09002 * 109.47398 * 299.89101 * 13 11 10 36 36 H 1.09001 * 109.47194 * 59.89281 * 13 11 10 37 37 H 0.97000 * 120.00333 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4412 0.0000 4 1 1.6660 1.9883 0.8637 5 6 1.6732 2.1634 -1.3221 6 6 2.7707 3.2408 -1.4491 7 7 3.9203 2.7906 -0.6430 8 6 3.5919 1.4783 -0.0465 9 8 2.0130 -0.6819 -1.1696 10 6 2.2654 -2.0381 -0.7298 11 6 2.7886 -1.8096 0.7104 12 1 3.8511 -1.5669 0.7030 13 6 2.5223 -3.0375 1.5835 14 6 3.0437 -2.7870 2.9751 15 1 3.5171 -1.8459 3.2130 16 6 2.9162 -3.7591 3.9444 17 7 2.3392 -4.9049 3.6548 18 14 3.5618 -3.4483 5.6695 19 1 2.4911 -2.8349 6.4957 20 1 3.9823 -4.7351 6.2799 21 1 4.7252 -2.5278 5.6043 22 8 2.0116 -0.6831 1.1649 23 1 -0.3633 0.5186 0.8871 24 1 -0.3633 0.5090 -0.8928 25 1 -0.3633 -1.0277 0.0055 26 1 1.7132 1.4715 -2.1634 27 1 0.6882 2.6237 -1.2466 28 1 2.4012 4.1931 -1.0687 29 1 3.0687 3.3488 -2.4921 30 1 4.1475 3.4659 0.0714 31 1 4.0036 1.4053 0.9601 32 1 3.9722 0.6699 -0.6708 33 1 3.0248 -2.5146 -1.3498 34 1 1.3459 -2.6234 -0.7226 35 1 1.4498 -3.2275 1.6260 36 1 3.0281 -3.9036 1.1565 37 1 2.2498 -5.5890 4.3366 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260253901.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:06 Heat of formation + Delta-G solvation = -97.894046 kcal Electronic energy + Delta-G solvation = -18414.461475 eV Core-core repulsion = 15577.276550 eV Total energy + Delta-G solvation = -2837.184925 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.37443 -37.88735 -34.57965 -33.39918 -32.19539 -29.96507 -28.86795 -28.28568 -26.51347 -23.23887 -22.39711 -21.22809 -20.61517 -19.72565 -16.96455 -16.61481 -16.23150 -16.08618 -15.00214 -14.46709 -14.35887 -13.62174 -13.47119 -13.27545 -12.89989 -12.56624 -12.39200 -12.32251 -11.94899 -11.77638 -11.73269 -11.30429 -11.24572 -11.04485 -10.85650 -10.64532 -10.53519 -10.45562 -9.71196 -9.58008 -9.12767 -8.86250 -8.42303 -8.39913 -6.02626 -4.03423 3.32675 3.38488 3.42507 3.92469 4.15973 4.44181 4.47260 4.65650 4.88420 5.04829 5.21036 5.32467 5.37001 5.39967 5.53841 5.57396 5.60931 5.72884 5.76213 5.81688 5.88822 6.00044 6.07152 6.15926 6.22761 6.34109 6.43418 6.46774 6.75972 6.85162 7.38778 7.40249 7.58225 7.84515 7.95007 8.35599 9.00702 9.59822 11.09047 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032571 B = 0.006359 C = 0.005829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.451530 B = 4402.367964 C = 4802.250354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.262 3.738 3 C -0.121 4.121 4 H 0.087 0.913 5 C -0.131 4.131 6 C 0.049 3.951 7 N -0.687 5.687 8 C 0.059 3.941 9 O -0.379 6.379 10 C 0.016 3.984 11 C 0.064 3.936 12 H 0.072 0.928 13 C 0.023 3.977 14 C -0.509 4.509 15 H 0.058 0.942 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.894 3.106 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 O -0.358 6.358 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.335 0.665 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.026 0.974 36 H 0.033 0.967 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.659 12.123 -9.343 15.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.184 3.816 3 C -0.141 4.141 4 H 0.105 0.895 5 C -0.169 4.169 6 C -0.081 4.081 7 N -0.315 5.315 8 C -0.070 4.070 9 O -0.300 6.300 10 C -0.061 4.061 11 C 0.007 3.993 12 H 0.089 0.911 13 C -0.014 4.014 14 C -0.547 4.547 15 H 0.077 0.923 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.722 3.278 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 O -0.279 6.279 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.150 0.850 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.090 0.910 35 H 0.044 0.956 36 H 0.051 0.949 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.321 11.859 -9.820 15.453 hybrid contribution -0.451 0.161 1.715 1.780 sum -1.772 12.020 -8.105 14.605 Atomic orbital electron populations 1.22339 0.94694 1.03233 1.02248 1.22971 0.92258 0.89953 0.76412 1.23043 0.97918 0.94722 0.98402 0.89508 1.22772 0.98349 0.97824 0.97961 1.22603 0.89655 0.96767 0.99046 1.61725 1.37953 1.04961 1.26818 1.22829 0.92834 0.91962 0.99386 1.89113 1.86049 1.22517 1.32302 1.24555 1.01191 0.83923 0.96386 1.24054 0.94793 0.88518 0.91911 0.91053 1.19272 0.98185 0.89598 0.94311 1.21088 1.37951 1.00883 0.94821 0.92342 1.24994 0.95422 0.95119 0.98954 1.69949 1.43992 1.05817 1.34039 0.86553 0.79241 0.77470 0.84521 1.20686 1.21269 1.19852 1.89023 1.69689 1.42018 1.27150 0.91209 0.91510 0.91677 0.89872 0.91268 0.93304 0.90931 0.84997 0.91121 0.89748 0.88188 0.91027 0.95599 0.94863 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 9.04 37.16 0.34 -2.18 16 2 C 0.26 4.41 0.78 -26.73 -0.02 4.39 16 3 C -0.12 -1.75 2.66 -88.48 -0.24 -1.98 16 4 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 5 C -0.13 -1.59 5.51 -24.91 -0.14 -1.73 16 6 C 0.05 0.55 7.58 -2.83 -0.02 0.52 16 7 N -0.69 -8.79 7.39 -110.79 -0.82 -9.61 16 8 C 0.06 0.87 6.75 -2.30 -0.02 0.86 16 9 O -0.38 -6.44 9.11 -59.04 -0.54 -6.98 16 10 C 0.02 0.27 7.36 38.17 0.28 0.55 16 11 C 0.06 1.33 3.62 -25.72 -0.09 1.24 16 12 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 13 C 0.02 0.59 4.75 -27.88 -0.13 0.46 16 14 C -0.51 -14.37 8.95 -34.44 -0.31 -14.68 16 15 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -26.70 13.29 55.43 0.74 -25.97 16 18 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 O -0.36 -7.48 10.14 -59.04 -0.60 -8.08 16 23 H 0.07 1.01 8.14 -51.94 -0.42 0.58 16 24 H 0.07 0.85 7.51 -51.93 -0.39 0.46 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.08 1.11 7.20 -51.93 -0.37 0.73 16 27 H 0.07 0.73 8.14 -51.94 -0.42 0.30 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.33 3.69 8.91 -39.29 -0.35 3.34 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.08 1.40 7.32 -51.93 -0.38 1.02 16 33 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 297.87 15.07 4.49 4.49 Total: -1.00 -30.30 297.87 -8.30 -38.60 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.10 Total: 1.78 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -0.45 Total: -11.04 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.08 Total: -35.58 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -1.14 Total: -15.06 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.30 -8.30 -38.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260253901.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.292 kcal (2) G-P(sol) polarization free energy of solvation -30.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds