Wall clock time and date at job start Mon Mar 30 2020 03:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.62456 * 2 1 4 4 H 1.09000 * 110.87639 * 58.00131 * 3 2 1 5 5 C 1.55139 * 110.99184 * 294.11113 * 3 2 1 6 6 C 1.54318 * 103.01721 * 206.25884 * 5 3 2 7 7 N 1.47445 * 107.23618 * 22.28203 * 6 5 3 8 8 C 1.47836 * 108.56613 * 0.99125 * 7 6 5 9 9 O 1.43744 * 109.63542 * 239.75613 * 2 1 3 10 10 C 1.44786 * 104.81905 * 264.43267 * 9 2 1 11 11 C 1.54919 * 101.71830 * 323.89712 * 10 9 2 12 12 H 1.08992 * 110.84389 * 277.09208 * 11 10 9 13 13 C 1.53000 * 110.69248 * 153.95339 * 11 10 9 14 14 C 1.50703 * 109.46912 * 179.89023 * 13 11 10 15 15 H 1.07996 * 119.99751 * 0.02562 * 14 13 11 16 16 C 1.37877 * 120.00001 * 180.02562 * 14 13 11 17 17 N 1.31517 * 120.00094 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99955 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47171 * 89.99544 * 18 16 14 20 20 H 1.48500 * 109.46632 * 209.99795 * 18 16 14 21 21 H 1.48494 * 109.47053 * 329.99231 * 18 16 14 22 22 O 1.43371 * 109.62915 * 120.38712 * 2 1 3 23 23 H 1.08989 * 109.47270 * 300.31129 * 1 2 3 24 24 H 1.09003 * 109.46768 * 60.31174 * 1 2 3 25 25 H 1.09001 * 109.47015 * 180.30436 * 1 2 3 26 26 H 1.09000 * 110.70411 * 324.63677 * 5 3 2 27 27 H 1.08989 * 110.70625 * 87.87235 * 5 3 2 28 28 H 1.09003 * 109.88545 * 262.87161 * 6 5 3 29 29 H 1.09004 * 110.02263 * 141.76909 * 6 5 3 30 30 H 1.00896 * 110.99467 * 238.72276 * 7 6 5 31 31 H 1.08998 * 110.37646 * 217.07681 * 8 7 6 32 32 H 1.08997 * 110.47401 * 94.78048 * 8 7 6 33 33 H 1.09000 * 110.98414 * 205.79094 * 10 9 2 34 34 H 1.09002 * 110.97322 * 81.99989 * 10 9 2 35 35 H 1.09002 * 109.47398 * 299.89101 * 13 11 10 36 36 H 1.09001 * 109.47194 * 59.89281 * 13 11 10 37 37 H 0.97000 * 120.00333 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4412 0.0000 4 1 1.6660 1.9883 0.8637 5 6 1.6732 2.1634 -1.3221 6 6 2.7707 3.2408 -1.4491 7 7 3.9203 2.7906 -0.6430 8 6 3.5919 1.4783 -0.0465 9 8 2.0130 -0.6819 -1.1696 10 6 2.2654 -2.0381 -0.7298 11 6 2.7886 -1.8096 0.7104 12 1 3.8511 -1.5669 0.7030 13 6 2.5223 -3.0375 1.5835 14 6 3.0437 -2.7870 2.9751 15 1 3.5171 -1.8459 3.2130 16 6 2.9162 -3.7591 3.9444 17 7 2.3392 -4.9049 3.6548 18 14 3.5618 -3.4483 5.6695 19 1 2.4911 -2.8349 6.4957 20 1 3.9823 -4.7351 6.2799 21 1 4.7252 -2.5278 5.6043 22 8 2.0116 -0.6831 1.1649 23 1 -0.3633 0.5186 0.8871 24 1 -0.3633 0.5090 -0.8928 25 1 -0.3633 -1.0277 0.0055 26 1 1.7132 1.4715 -2.1634 27 1 0.6882 2.6237 -1.2466 28 1 2.4012 4.1931 -1.0687 29 1 3.0687 3.3488 -2.4921 30 1 4.1475 3.4659 0.0714 31 1 4.0036 1.4053 0.9601 32 1 3.9722 0.6699 -0.6708 33 1 3.0248 -2.5146 -1.3498 34 1 1.3459 -2.6234 -0.7226 35 1 1.4498 -3.2275 1.6260 36 1 3.0281 -3.9036 1.1565 37 1 2.2498 -5.5890 4.3366 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260253901.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:06 Heat of formation + Delta-G solvation = -118.959474 kcal Electronic energy + Delta-G solvation = -18415.374941 eV Core-core repulsion = 15577.276550 eV Total energy + Delta-G solvation = -2838.098390 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.76008 -39.01413 -36.16561 -35.24885 -33.76894 -31.59201 -29.96389 -29.43002 -28.29284 -25.13080 -23.61629 -22.37019 -22.23708 -20.95374 -18.58613 -18.16325 -17.74063 -17.38503 -16.74047 -16.05043 -15.74309 -15.09593 -14.77439 -14.42734 -14.27148 -13.93937 -13.88346 -13.63446 -13.47094 -13.41247 -13.15437 -13.05556 -12.66786 -12.43908 -12.31725 -12.20668 -12.01740 -11.70434 -11.59674 -11.17276 -10.95835 -10.60081 -10.40994 -9.43268 -8.21769 -6.30263 1.38920 1.39851 1.51037 2.40050 2.52524 2.93213 3.13290 3.35158 3.53847 3.73027 3.81432 3.95722 4.05362 4.18562 4.33392 4.37266 4.44119 4.51313 4.53860 4.66339 4.70689 4.74774 4.87593 4.94936 5.02723 5.09024 5.11080 5.19092 5.32855 5.36432 5.56357 5.74678 5.84323 6.17485 6.34669 6.48168 6.81262 7.37211 8.90078 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032571 B = 0.006359 C = 0.005829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.451530 B = 4402.367964 C = 4802.250354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.253 3.747 3 C -0.120 4.120 4 H 0.091 0.909 5 C -0.123 4.123 6 C 0.049 3.951 7 N -0.693 5.693 8 C 0.062 3.938 9 O -0.375 6.375 10 C 0.025 3.975 11 C 0.069 3.931 12 H 0.069 0.931 13 C 0.029 3.971 14 C -0.529 4.529 15 H 0.053 0.947 16 C 0.003 3.997 17 N -0.931 5.931 18 Si 0.961 3.039 19 H -0.276 1.276 20 H -0.279 1.279 21 H -0.266 1.266 22 O -0.385 6.385 23 H 0.074 0.926 24 H 0.093 0.907 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.346 0.654 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.125 0.875 34 H 0.072 0.928 35 H -0.001 1.001 36 H 0.021 0.979 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.738 13.858 -9.669 16.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.175 3.825 3 C -0.140 4.140 4 H 0.109 0.891 5 C -0.161 4.161 6 C -0.080 4.080 7 N -0.321 5.321 8 C -0.067 4.067 9 O -0.296 6.296 10 C -0.052 4.052 11 C 0.012 3.988 12 H 0.087 0.913 13 C -0.008 4.008 14 C -0.567 4.567 15 H 0.071 0.929 16 C -0.195 4.195 17 N -0.572 5.572 18 Si 0.786 3.214 19 H -0.201 1.201 20 H -0.204 1.204 21 H -0.190 1.190 22 O -0.307 6.307 23 H 0.093 0.907 24 H 0.112 0.888 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.110 0.890 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.162 0.838 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.143 0.857 34 H 0.090 0.910 35 H 0.017 0.983 36 H 0.039 0.961 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.400 13.615 -10.159 17.045 hybrid contribution -0.444 -0.357 1.789 1.877 sum -1.844 13.258 -8.371 15.788 Atomic orbital electron populations 1.22350 0.93303 1.02830 1.03810 1.23349 0.93326 0.90711 0.75099 1.23045 0.97555 0.93343 1.00068 0.89066 1.22747 0.99918 0.97623 0.95813 1.22678 0.88735 0.97388 0.99215 1.61676 1.38873 1.04407 1.27184 1.22651 0.93141 0.92618 0.98302 1.89115 1.86132 1.22146 1.32223 1.24478 1.01781 0.84390 0.94508 1.23750 0.94901 0.87045 0.93063 0.91291 1.19093 0.95961 0.91454 0.94265 1.21430 1.38078 1.00727 0.96450 0.92898 1.25862 0.95577 0.94833 1.03188 1.70059 1.44967 1.06663 1.35488 0.85505 0.78835 0.77722 0.79354 1.20142 1.20393 1.19017 1.88974 1.69875 1.42196 1.29623 0.90716 0.88847 0.93088 0.90997 0.88991 0.90903 0.90410 0.83800 0.92369 0.91850 0.85716 0.90993 0.98255 0.96089 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.74 9.04 71.98 0.65 -4.09 16 2 C 0.25 8.28 0.78 30.60 0.02 8.31 16 3 C -0.12 -3.28 2.66 -9.40 -0.03 -3.31 16 4 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 5 C -0.12 -2.64 5.51 31.77 0.18 -2.46 16 6 C 0.05 0.95 7.58 86.65 0.66 1.60 16 7 N -0.69 -16.44 7.39 -504.43 -3.73 -20.17 16 8 C 0.06 1.81 6.75 86.78 0.59 2.39 16 9 O -0.38 -12.36 9.11 -126.22 -1.15 -13.51 16 10 C 0.02 0.84 7.36 72.64 0.53 1.38 16 11 C 0.07 2.93 3.62 31.25 0.11 3.05 16 12 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 13 C 0.03 1.53 4.75 29.85 0.14 1.67 16 14 C -0.53 -30.45 8.95 25.60 0.23 -30.22 16 15 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 16 C 0.00 0.18 5.46 84.65 0.46 0.64 16 17 N -0.93 -56.20 13.29 21.45 0.28 -55.92 16 18 Si 0.96 44.92 29.54 68.60 2.03 46.94 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 22 O -0.39 -16.26 10.14 -126.22 -1.28 -17.54 16 23 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.09 2.15 7.51 -2.39 -0.02 2.13 16 25 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.07 1.73 7.20 -2.39 -0.02 1.72 16 27 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.35 6.92 8.91 -89.70 -0.80 6.13 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.06 2.09 7.32 -2.39 -0.02 2.08 16 33 H 0.12 3.62 8.14 -2.39 -0.02 3.60 16 34 H 0.07 2.46 8.04 -2.39 -0.02 2.44 16 35 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -65.11 297.87 -0.06 -65.17 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.24 Total: 16.05 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: 3.55 Total: -21.03 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -3.44 Total: -76.08 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -2.43 Total: -31.05 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -65.11 -0.06 -65.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260253901.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.791 kcal (2) G-P(sol) polarization free energy of solvation -65.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds