Wall clock time and date at job start Mon Mar 30 2020 03:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47055 * 2 1 4 4 C 1.53009 * 109.47197 * 119.99930 * 2 1 3 5 5 C 1.53001 * 109.46709 * 66.29085 * 4 2 1 6 6 H 1.09007 * 109.39171 * 173.19823 * 5 4 2 7 7 C 1.53017 * 109.39699 * 53.38669 * 5 4 2 8 8 O 1.43245 * 108.66937 * 190.78994 * 7 5 4 9 9 C 1.42964 * 112.99172 * 68.35940 * 8 7 5 10 10 C 1.50350 * 109.80749 * 310.40516 * 9 8 7 11 11 O 1.21282 * 118.83330 * 195.90171 * 10 9 8 12 12 N 1.33875 * 122.33519 * 16.17555 * 10 9 8 13 13 C 1.46492 * 118.72980 * 177.81784 * 12 10 9 14 14 C 1.50697 * 109.47449 * 90.45780 * 13 12 10 15 15 H 1.08001 * 120.00087 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00348 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00144 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00180 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.46942 * 89.99928 * 18 16 14 20 20 H 1.48499 * 109.47162 * 209.99799 * 18 16 14 21 21 H 1.48499 * 109.47197 * 329.99917 * 18 16 14 22 22 H 1.08998 * 109.47444 * 53.23266 * 1 2 3 23 23 H 1.09003 * 109.47009 * 173.22962 * 1 2 3 24 24 H 1.08998 * 109.47738 * 293.22516 * 1 2 3 25 25 H 1.09004 * 109.47403 * 239.99702 * 2 1 3 26 26 H 1.09000 * 109.46737 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47391 * 299.99908 * 3 2 1 28 28 H 1.09004 * 109.46878 * 59.99998 * 3 2 1 29 29 H 1.09004 * 109.46675 * 306.29612 * 4 2 1 30 30 H 1.08990 * 109.47155 * 186.29363 * 4 2 1 31 31 H 1.08993 * 109.60797 * 71.03240 * 7 5 4 32 32 H 1.08999 * 109.73809 * 310.61597 * 7 5 4 33 33 H 1.08991 * 109.41751 * 190.30210 * 9 8 7 34 34 H 1.08995 * 109.41261 * 70.50160 * 9 8 7 35 35 H 1.09002 * 109.47274 * 210.46099 * 13 12 10 36 36 H 1.08998 * 109.47597 * 330.45668 * 13 12 10 37 37 H 0.96993 * 120.00696 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6631 -2.2022 1.1727 6 1 2.1289 -2.7375 2.0002 7 6 2.1587 -2.7848 -0.1526 8 8 1.5864 -4.0867 -0.3236 9 6 0.1741 -4.0515 -0.5427 10 6 -0.4821 -3.1905 0.5006 11 8 -1.6821 -3.2724 0.6564 12 7 0.2105 -2.3328 1.2602 13 6 -0.5155 -1.4971 2.2196 14 6 -0.5993 -2.2102 3.5445 15 1 -0.1556 -3.1881 3.6604 16 6 -1.2413 -1.6140 4.6091 17 7 -1.7803 -0.4227 4.4685 18 14 -1.3445 -2.4978 6.2516 19 1 -0.1666 -2.1389 7.0816 20 1 -2.5877 -2.0918 6.9549 21 1 -1.3611 -3.9651 6.0240 22 1 -0.3634 0.6151 -0.8232 23 1 -0.3633 -1.0205 -0.1212 24 1 -0.3634 0.4052 0.9443 25 1 1.8933 -0.5139 -0.8900 26 1 3.1299 1.4424 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6765 1.9563 0.8900 29 1 1.5875 -0.2766 2.1357 30 1 3.1240 -0.6247 1.3074 31 1 3.2457 -2.8627 -0.1342 32 1 1.8521 -2.1396 -0.9759 33 1 -0.2273 -5.0630 -0.4824 34 1 -0.0290 -3.6405 -1.5316 35 1 0.0106 -0.5512 2.3487 36 1 -1.5214 -1.3052 1.8462 37 1 -2.2323 -0.0033 5.2172 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260283522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:41 Heat of formation + Delta-G solvation = -69.379604 kcal Electronic energy + Delta-G solvation = -18994.184492 eV Core-core repulsion = 16158.236047 eV Total energy + Delta-G solvation = -2835.948446 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.48947 -37.21186 -36.83305 -33.91378 -32.52175 -30.47273 -28.37519 -26.93530 -26.74468 -25.25355 -22.48599 -22.34432 -19.93640 -18.05714 -17.32022 -16.41427 -16.27507 -15.46698 -14.95869 -14.56161 -14.44999 -14.38249 -13.50762 -13.23955 -13.07786 -12.57248 -12.52592 -12.14057 -11.80625 -11.38612 -11.33651 -11.19354 -11.06644 -10.75580 -10.72365 -10.52639 -10.46564 -10.22196 -10.06258 -9.75392 -9.30461 -8.62165 -8.39997 -7.60635 -6.04060 -4.07540 3.28485 3.30626 3.37254 3.42602 3.64488 4.09055 4.45238 4.77839 5.00596 5.10918 5.16636 5.21096 5.30945 5.36953 5.46511 5.52293 5.70886 5.81812 5.85269 5.93229 5.99573 6.21577 6.26010 6.32583 6.42742 6.48610 6.65926 6.86387 6.93252 7.20259 7.44552 7.49633 7.92145 8.25374 8.39358 8.88058 9.02014 9.56775 11.03855 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021251 B = 0.009614 C = 0.007891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.288451 B = 2911.841103 C = 3547.476701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.095 4.095 3 C -0.145 4.145 4 C -0.131 4.131 5 C 0.116 3.884 6 H 0.079 0.921 7 C 0.042 3.958 8 O -0.376 6.376 9 C 0.047 3.953 10 C 0.474 3.526 11 O -0.543 6.543 12 N -0.577 5.577 13 C 0.236 3.764 14 C -0.526 4.526 15 H 0.055 0.945 16 C 0.062 3.938 17 N -0.895 5.895 18 Si 0.896 3.104 19 H -0.281 1.281 20 H -0.285 1.285 21 H -0.274 1.274 22 H 0.037 0.963 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.066 0.934 33 H 0.121 0.879 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.045 0.955 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.775 0.296 -9.950 13.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.168 4.168 5 C 0.011 3.989 6 H 0.097 0.903 7 C -0.035 4.035 8 O -0.294 6.294 9 C -0.033 4.033 10 C 0.260 3.740 11 O -0.421 6.421 12 N -0.309 5.309 13 C 0.117 3.883 14 C -0.565 4.565 15 H 0.074 0.926 16 C -0.140 4.140 17 N -0.534 5.534 18 Si 0.724 3.276 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.199 1.199 22 H 0.056 0.944 23 H 0.087 0.913 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.111 0.889 30 H 0.088 0.912 31 H 0.124 0.876 32 H 0.084 0.916 33 H 0.139 0.861 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.160 0.227 -9.757 13.385 hybrid contribution -0.187 -0.210 1.049 1.086 sum 8.973 0.017 -8.708 12.504 Atomic orbital electron populations 1.22443 0.94548 1.03010 1.02284 1.21174 0.96883 0.95676 0.97615 1.21832 1.00183 0.96437 1.01763 1.22034 1.00625 0.94102 1.00084 1.21510 0.82534 0.96864 0.97964 0.90296 1.23247 0.99209 0.84479 0.96597 1.88104 1.20395 1.28022 1.92920 1.22859 0.81049 1.02065 0.97308 1.20568 0.88166 0.81743 0.83495 1.90725 1.14671 1.67398 1.69355 1.47896 1.06095 1.38796 1.38099 1.19639 0.92821 0.89922 0.85870 1.21471 1.35891 1.03671 0.95450 0.92644 1.24900 0.95159 0.94983 0.98956 1.69914 1.37001 1.14703 1.31817 0.86526 0.77439 0.80097 0.83551 1.20683 1.21124 1.19935 0.94376 0.91345 0.90786 0.91768 0.93176 0.93156 0.92430 0.88875 0.91247 0.87644 0.91562 0.86141 0.90376 0.93370 0.93685 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 7.42 37.15 0.28 -2.52 16 2 C -0.10 -1.31 2.60 -90.62 -0.24 -1.54 16 3 C -0.14 -1.75 9.19 37.16 0.34 -1.41 16 4 C -0.13 -1.93 4.49 -26.73 -0.12 -2.05 16 5 C 0.12 1.92 3.29 -68.13 -0.22 1.69 16 6 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 7 C 0.04 0.55 5.97 37.17 0.22 0.77 16 8 O -0.38 -5.79 10.85 -35.23 -0.38 -6.17 16 9 C 0.05 0.74 6.99 35.84 0.25 0.99 16 10 C 0.47 10.04 6.12 -11.56 -0.07 9.97 16 11 O -0.54 -13.92 16.38 5.56 0.09 -13.83 16 12 N -0.58 -12.04 1.25 -168.16 -0.21 -12.25 16 13 C 0.24 5.96 2.49 -5.20 -0.01 5.95 16 14 C -0.53 -14.92 9.38 -34.44 -0.32 -15.24 16 15 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 17 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 18 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 1.29 4.32 -51.93 -0.22 1.06 16 24 H 0.07 1.45 5.88 -51.93 -0.31 1.14 16 25 H 0.06 0.78 5.74 -51.93 -0.30 0.49 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.09 1.66 5.89 -51.93 -0.31 1.36 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.81 5.57 -51.93 -0.29 0.52 16 33 H 0.12 1.76 8.14 -51.93 -0.42 1.34 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.05 1.20 3.90 -51.93 -0.20 1.00 16 36 H 0.05 1.31 7.18 -51.93 -0.37 0.93 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 283.90 15.07 4.28 4.28 Total: -1.00 -32.24 283.90 -5.85 -38.09 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -5.35 Total: 0.14 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 0.00 Total: -1.72 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.53 Total: -37.82 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.29 Total: -20.00 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.24 -5.85 -38.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260283522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.288 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds