Wall clock time and date at job start Mon Mar 30 2020 03:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47055 * 2 1 4 4 C 1.53009 * 109.47197 * 119.99930 * 2 1 3 5 5 C 1.53001 * 109.46709 * 66.29085 * 4 2 1 6 6 H 1.09007 * 109.39171 * 173.19823 * 5 4 2 7 7 C 1.53017 * 109.39699 * 53.38669 * 5 4 2 8 8 O 1.43245 * 108.66937 * 190.78994 * 7 5 4 9 9 C 1.42964 * 112.99172 * 68.35940 * 8 7 5 10 10 C 1.50350 * 109.80749 * 310.40516 * 9 8 7 11 11 O 1.21282 * 118.83330 * 195.90171 * 10 9 8 12 12 N 1.33875 * 122.33519 * 16.17555 * 10 9 8 13 13 C 1.46492 * 118.72980 * 177.81784 * 12 10 9 14 14 C 1.50697 * 109.47449 * 90.45780 * 13 12 10 15 15 H 1.08001 * 120.00087 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00348 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00144 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00180 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.46942 * 89.99928 * 18 16 14 20 20 H 1.48499 * 109.47162 * 209.99799 * 18 16 14 21 21 H 1.48499 * 109.47197 * 329.99917 * 18 16 14 22 22 H 1.08998 * 109.47444 * 53.23266 * 1 2 3 23 23 H 1.09003 * 109.47009 * 173.22962 * 1 2 3 24 24 H 1.08998 * 109.47738 * 293.22516 * 1 2 3 25 25 H 1.09004 * 109.47403 * 239.99702 * 2 1 3 26 26 H 1.09000 * 109.46737 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47391 * 299.99908 * 3 2 1 28 28 H 1.09004 * 109.46878 * 59.99998 * 3 2 1 29 29 H 1.09004 * 109.46675 * 306.29612 * 4 2 1 30 30 H 1.08990 * 109.47155 * 186.29363 * 4 2 1 31 31 H 1.08993 * 109.60797 * 71.03240 * 7 5 4 32 32 H 1.08999 * 109.73809 * 310.61597 * 7 5 4 33 33 H 1.08991 * 109.41751 * 190.30210 * 9 8 7 34 34 H 1.08995 * 109.41261 * 70.50160 * 9 8 7 35 35 H 1.09002 * 109.47274 * 210.46099 * 13 12 10 36 36 H 1.08998 * 109.47597 * 330.45668 * 13 12 10 37 37 H 0.96993 * 120.00696 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6631 -2.2022 1.1727 6 1 2.1289 -2.7375 2.0002 7 6 2.1587 -2.7848 -0.1526 8 8 1.5864 -4.0867 -0.3236 9 6 0.1741 -4.0515 -0.5427 10 6 -0.4821 -3.1905 0.5006 11 8 -1.6821 -3.2724 0.6564 12 7 0.2105 -2.3328 1.2602 13 6 -0.5155 -1.4971 2.2196 14 6 -0.5993 -2.2102 3.5445 15 1 -0.1556 -3.1881 3.6604 16 6 -1.2413 -1.6140 4.6091 17 7 -1.7803 -0.4227 4.4685 18 14 -1.3445 -2.4978 6.2516 19 1 -0.1666 -2.1389 7.0816 20 1 -2.5877 -2.0918 6.9549 21 1 -1.3611 -3.9651 6.0240 22 1 -0.3634 0.6151 -0.8232 23 1 -0.3633 -1.0205 -0.1212 24 1 -0.3634 0.4052 0.9443 25 1 1.8933 -0.5139 -0.8900 26 1 3.1299 1.4424 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6765 1.9563 0.8900 29 1 1.5875 -0.2766 2.1357 30 1 3.1240 -0.6247 1.3074 31 1 3.2457 -2.8627 -0.1342 32 1 1.8521 -2.1396 -0.9759 33 1 -0.2273 -5.0630 -0.4824 34 1 -0.0290 -3.6405 -1.5316 35 1 0.0106 -0.5512 2.3487 36 1 -1.5214 -1.3052 1.8462 37 1 -2.2323 -0.0033 5.2172 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260283522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:40 Heat of formation + Delta-G solvation = -91.345108 kcal Electronic energy + Delta-G solvation = -18995.136988 eV Core-core repulsion = 16158.236047 eV Total energy + Delta-G solvation = -2836.900941 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.96364 -38.77619 -38.10555 -35.59309 -34.47079 -31.90004 -30.08541 -28.41009 -27.97237 -26.78043 -24.28890 -23.74201 -21.23806 -19.60775 -18.74887 -18.38367 -17.79690 -16.93695 -16.52549 -16.26945 -15.87670 -15.68707 -15.00467 -14.64377 -14.38622 -14.32013 -13.88208 -13.69405 -13.23750 -13.10034 -12.94886 -12.69944 -12.51835 -12.43278 -12.30232 -12.07420 -11.92781 -11.70795 -11.54149 -11.37228 -10.92874 -10.58777 -10.15158 -9.36586 -8.23589 -6.37090 1.32221 1.35173 1.45235 1.67267 2.13995 2.37699 2.87141 3.05270 3.46773 3.75788 3.92219 3.99027 4.08488 4.20796 4.30409 4.41671 4.50131 4.68242 4.76559 4.82920 4.89411 4.93888 5.02438 5.07576 5.18488 5.23652 5.26149 5.35070 5.47723 5.53056 5.60626 5.77141 5.90133 6.08739 6.68240 6.77216 7.23970 7.38614 8.82741 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021251 B = 0.009614 C = 0.007891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.288451 B = 2911.841103 C = 3547.476701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.088 4.088 3 C -0.141 4.141 4 C -0.124 4.124 5 C 0.104 3.896 6 H 0.068 0.932 7 C 0.047 3.953 8 O -0.378 6.378 9 C 0.061 3.939 10 C 0.460 3.540 11 O -0.603 6.603 12 N -0.577 5.577 13 C 0.259 3.741 14 C -0.548 4.548 15 H 0.043 0.957 16 C 0.011 3.989 17 N -0.924 5.924 18 Si 0.962 3.038 19 H -0.262 1.262 20 H -0.279 1.279 21 H -0.277 1.277 22 H 0.051 0.949 23 H 0.046 0.954 24 H 0.032 0.968 25 H 0.096 0.904 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.036 0.964 29 H 0.052 0.948 30 H 0.110 0.890 31 H 0.148 0.852 32 H 0.084 0.916 33 H 0.134 0.866 34 H 0.112 0.888 35 H 0.050 0.950 36 H -0.005 1.005 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.487 -0.200 -11.113 16.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.106 4.106 3 C -0.198 4.198 4 C -0.162 4.162 5 C 0.001 3.999 6 H 0.086 0.914 7 C -0.029 4.029 8 O -0.296 6.296 9 C -0.018 4.018 10 C 0.249 3.751 11 O -0.486 6.486 12 N -0.308 5.308 13 C 0.138 3.862 14 C -0.586 4.586 15 H 0.061 0.939 16 C -0.188 4.188 17 N -0.564 5.564 18 Si 0.787 3.213 19 H -0.187 1.187 20 H -0.205 1.205 21 H -0.202 1.202 22 H 0.070 0.930 23 H 0.065 0.935 24 H 0.051 0.949 25 H 0.114 0.886 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.128 0.872 31 H 0.166 0.834 32 H 0.102 0.898 33 H 0.152 0.848 34 H 0.130 0.870 35 H 0.067 0.933 36 H 0.013 0.987 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.930 -0.265 -10.933 16.184 hybrid contribution -1.036 -0.016 1.402 1.744 sum 10.893 -0.282 -9.531 14.477 Atomic orbital electron populations 1.22345 0.97558 1.01448 1.00532 1.21181 0.94016 0.97256 0.98185 1.21799 1.01815 0.94847 1.01363 1.21984 1.02755 0.92582 0.98888 1.21909 0.79452 0.98404 1.00119 0.91440 1.23467 1.01255 0.83637 0.94557 1.88118 1.19511 1.29244 1.92753 1.22812 0.81121 1.01521 0.96334 1.21722 0.87759 0.81601 0.84026 1.90685 1.17405 1.69212 1.71252 1.47910 1.08070 1.37909 1.36890 1.19041 0.90970 0.90628 0.85558 1.21768 1.36263 1.03380 0.97211 0.93876 1.25762 0.94605 0.95734 1.02686 1.70029 1.37418 1.15960 1.33008 0.85503 0.78191 0.78457 0.79196 1.18733 1.20467 1.20235 0.93002 0.93534 0.94855 0.88642 0.90472 0.92052 0.94446 0.92975 0.87184 0.83432 0.89775 0.84845 0.87017 0.93267 0.98724 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.56 7.42 71.98 0.53 -5.03 16 2 C -0.09 -2.23 2.60 -10.79 -0.03 -2.26 16 3 C -0.14 -3.04 9.19 71.98 0.66 -2.38 16 4 C -0.12 -3.48 4.49 30.60 0.14 -3.34 16 5 C 0.10 3.31 3.29 45.07 0.15 3.46 16 6 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 7 C 0.05 1.05 5.97 71.99 0.43 1.48 16 8 O -0.38 -10.30 10.85 -148.98 -1.62 -11.91 16 9 C 0.06 1.82 6.99 71.13 0.50 2.32 16 10 C 0.46 19.84 6.12 87.69 0.54 20.38 16 11 O -0.60 -32.49 16.38 -3.04 -0.05 -32.54 16 12 N -0.58 -24.72 1.25 -804.84 -1.00 -25.72 16 13 C 0.26 13.89 2.49 85.63 0.21 14.10 16 14 C -0.55 -32.46 9.38 25.60 0.24 -32.22 16 15 H 0.04 2.59 7.81 -2.91 -0.02 2.57 16 16 C 0.01 0.66 5.46 84.66 0.46 1.12 16 17 N -0.92 -56.37 13.29 21.45 0.28 -56.09 16 18 Si 0.96 46.07 29.54 68.60 2.03 48.10 16 19 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 21 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 22 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.05 1.80 4.32 -2.39 -0.01 1.79 16 24 H 0.03 1.39 5.88 -2.39 -0.01 1.37 16 25 H 0.10 1.88 5.74 -2.38 -0.01 1.86 16 26 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.05 1.91 5.89 -2.39 -0.01 1.89 16 30 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.15 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.08 1.64 5.57 -2.39 -0.01 1.62 16 33 H 0.13 3.64 8.14 -2.39 -0.02 3.62 16 34 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.05 2.63 3.90 -2.39 -0.01 2.62 16 36 H -0.01 -0.34 7.18 -2.39 -0.02 -0.35 16 37 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -75.45 283.90 4.54 -70.91 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 1.06 Total: 9.62 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 3.83 Total: -2.36 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -0.72 Total: -81.81 kcal Atomic # 8 Polarization: -42.79 SS G_CDS: -1.67 Total: -44.46 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -75.45 4.54 -70.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260283522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.432 kcal (2) G-P(sol) polarization free energy of solvation -75.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds