Wall clock time and date at job start Mon Mar 30 2020 04:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34776 * 119.99780 * 2 1 4 4 O 1.21283 * 119.99373 * 184.76260 * 3 2 1 5 5 C 1.50696 * 120.00356 * 4.75576 * 3 2 1 6 6 H 1.09004 * 109.81870 * 46.81604 * 5 3 2 7 7 C 1.54376 * 109.83423 * 285.92759 * 5 3 2 8 8 C 1.55453 * 102.18860 * 219.17921 * 7 5 3 9 9 C 1.54954 * 100.98375 * 34.03789 * 8 7 5 10 10 O 1.43236 * 109.83222 * 167.69813 * 5 3 2 11 11 C 1.46501 * 119.99790 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47096 * 247.05833 * 11 2 1 13 13 C 1.52995 * 109.46918 * 127.05685 * 11 2 1 14 14 C 1.50698 * 109.47249 * 7.05726 * 11 2 1 15 15 H 1.08002 * 120.00018 * 245.21846 * 14 11 2 16 16 C 1.37881 * 119.99959 * 65.49020 * 14 11 2 17 17 N 1.31516 * 119.99930 * 178.58521 * 16 14 11 18 18 Si 1.86796 * 119.99992 * 358.58157 * 16 14 11 19 19 H 1.48502 * 109.46933 * 89.77068 * 18 16 14 20 20 H 1.48500 * 109.47365 * 209.76769 * 18 16 14 21 21 H 1.48499 * 109.47183 * 329.76989 * 18 16 14 22 22 H 1.09000 * 109.47311 * 275.13994 * 1 2 3 23 23 H 1.09007 * 109.47135 * 35.13905 * 1 2 3 24 24 H 1.08998 * 109.47235 * 155.13937 * 1 2 3 25 25 H 1.08999 * 110.84511 * 337.32102 * 7 5 3 26 26 H 1.09002 * 110.84839 * 100.93819 * 7 5 3 27 27 H 1.08997 * 111.05915 * 276.12692 * 8 7 5 28 28 H 1.08998 * 111.14642 * 151.98900 * 8 7 5 29 29 H 1.09000 * 110.30283 * 204.68943 * 9 8 7 30 30 H 1.09003 * 110.39129 * 82.56808 * 9 8 7 31 31 H 1.09000 * 109.47211 * 180.02562 * 12 11 2 32 32 H 1.08999 * 109.46793 * 300.00356 * 12 11 2 33 33 H 1.09005 * 109.47016 * 59.99968 * 12 11 2 34 34 H 1.09000 * 109.47610 * 308.63248 * 13 11 2 35 35 H 1.09005 * 109.47221 * 68.62851 * 13 11 2 36 36 H 1.09004 * 109.47262 * 188.63052 * 13 11 2 37 37 H 0.97000 * 119.99850 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3485 1.1689 -0.0872 5 6 1.3893 2.4701 0.1082 6 1 0.6524 2.4071 0.9090 7 6 0.6840 2.7812 -1.2293 8 6 0.8844 4.3175 -1.3565 9 6 2.2783 4.4886 -0.7016 10 8 2.3063 3.5376 0.3746 11 6 2.1975 -1.2688 0.0006 12 6 2.9394 -1.4287 1.3290 13 6 3.2052 -1.2763 -1.1506 14 6 1.2275 -2.4089 -0.1735 15 1 1.0867 -3.1245 0.6231 16 6 0.5240 -2.5417 -1.3518 17 7 -0.3018 -3.5523 -1.5144 18 14 0.7435 -1.2860 -2.7173 19 1 1.8479 -1.7160 -3.6121 20 1 -0.5144 -1.1800 -3.4993 21 1 1.0717 0.0360 -2.1260 22 1 -0.3634 0.0921 1.0235 23 1 -0.3634 0.8404 -0.5915 24 1 -0.3633 -0.9324 -0.4320 25 1 1.1676 2.2575 -2.0539 26 1 -0.3754 2.5299 -1.1769 27 1 0.1199 4.8596 -0.8001 28 1 0.9008 4.6267 -2.4015 29 1 2.3928 5.5012 -0.3148 30 1 3.0661 4.2681 -1.4220 31 1 3.4848 -2.3725 1.3293 32 1 3.6410 -0.6041 1.4549 33 1 2.2214 -1.4233 2.1492 34 1 2.6990 -1.0104 -2.0785 35 1 3.9946 -0.5526 -0.9472 36 1 3.6402 -2.2712 -1.2462 37 1 -0.7964 -3.6459 -2.3435 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260324207.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:57 Heat of formation + Delta-G solvation = -51.223279 kcal Electronic energy + Delta-G solvation = -19220.828334 eV Core-core repulsion = 16385.667206 eV Total energy + Delta-G solvation = -2835.161128 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.14880 -38.32488 -35.65331 -32.95009 -32.05037 -31.60059 -29.05990 -26.52888 -26.29218 -24.57159 -23.35710 -21.71735 -20.32524 -18.27595 -17.24865 -16.71512 -16.05353 -15.60963 -14.96813 -14.70984 -14.31354 -13.79004 -13.41841 -13.11019 -12.85504 -12.61472 -12.53166 -12.03123 -11.89889 -11.59870 -11.41560 -11.16432 -11.10637 -10.90188 -10.72314 -10.59249 -10.17449 -10.08646 -9.87802 -9.45942 -9.28832 -8.71843 -8.31291 -7.49550 -6.34478 -4.37696 3.15603 3.21782 3.32963 3.34795 3.69646 4.20169 4.20554 4.49812 4.82259 4.92267 5.11467 5.19296 5.23929 5.48845 5.63069 5.69844 5.77493 5.83686 6.01831 6.11541 6.16154 6.23650 6.36676 6.50626 6.70030 6.78136 6.85244 6.93092 7.00970 7.10552 7.28603 7.33952 7.74685 8.19487 8.58661 8.73986 9.07564 9.26518 10.74899 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.029443 B = 0.010326 C = 0.008929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.768909 B = 2710.939398 C = 3135.253826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.584 5.584 3 C 0.491 3.509 4 O -0.542 6.542 5 C 0.063 3.937 6 H 0.098 0.902 7 C -0.147 4.147 8 C -0.155 4.155 9 C 0.050 3.950 10 O -0.356 6.356 11 C 0.253 3.747 12 C -0.135 4.135 13 C -0.158 4.158 14 C -0.515 4.515 15 H 0.083 0.917 16 C 0.078 3.922 17 N -0.881 5.881 18 Si 0.884 3.116 19 H -0.287 1.287 20 H -0.302 1.302 21 H -0.242 1.242 22 H 0.045 0.955 23 H 0.046 0.954 24 H 0.110 0.890 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.043 0.957 34 H 0.034 0.966 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.991 12.853 -0.083 12.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.317 5.317 3 C 0.277 3.723 4 O -0.421 6.421 5 C 0.002 3.998 6 H 0.116 0.884 7 C -0.184 4.184 8 C -0.192 4.192 9 C -0.027 4.027 10 O -0.274 6.274 11 C 0.173 3.827 12 C -0.193 4.193 13 C -0.215 4.215 14 C -0.553 4.553 15 H 0.101 0.899 16 C -0.127 4.127 17 N -0.517 5.517 18 Si 0.715 3.285 19 H -0.215 1.215 20 H -0.231 1.231 21 H -0.166 1.166 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.128 0.872 25 H 0.101 0.899 26 H 0.110 0.890 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.353 12.733 -0.039 12.738 hybrid contribution -0.289 0.409 -1.080 1.190 sum -0.642 13.142 -1.119 13.205 Atomic orbital electron populations 1.22001 0.81502 1.04285 1.00715 1.49218 1.06674 1.05982 1.69873 1.20742 0.88382 0.85392 0.77774 1.90555 1.14029 1.87129 1.50353 1.22751 0.91098 0.87601 0.98358 0.88400 1.23191 1.01973 0.96079 0.97205 1.23305 0.97939 0.95907 1.02078 1.23389 0.96367 0.93107 0.89796 1.88467 1.63290 1.33361 1.42319 1.18589 0.90541 0.81187 0.92418 1.21904 0.99404 1.00497 0.97497 1.22472 0.99995 1.01304 0.97760 1.21068 1.22944 1.09145 1.02166 0.89854 1.25157 0.94241 0.95219 0.98045 1.69918 1.26064 1.29181 1.26540 0.87267 0.75698 0.84090 0.81490 1.21469 1.23078 1.16627 0.93690 0.93536 0.87230 0.89901 0.89014 0.90200 0.89856 0.89722 0.92161 0.92745 0.93557 0.93775 0.94774 0.91616 0.92635 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.11 7.31 59.85 0.44 1.55 16 2 N -0.58 -12.60 1.40 -167.87 -0.23 -12.84 16 3 C 0.49 10.40 5.86 -10.99 -0.06 10.33 16 4 O -0.54 -13.06 12.97 -13.80 -0.18 -13.24 16 5 C 0.06 1.07 3.14 -27.16 -0.09 0.99 16 6 H 0.10 1.49 7.78 -51.93 -0.40 1.09 16 7 C -0.15 -2.07 5.39 -24.71 -0.13 -2.21 16 8 C -0.15 -1.72 7.16 -24.40 -0.17 -1.89 16 9 C 0.05 0.66 7.78 38.19 0.30 0.96 16 10 O -0.36 -6.25 10.59 -54.59 -0.58 -6.82 16 11 C 0.25 5.96 0.61 -132.97 -0.08 5.88 16 12 C -0.13 -2.95 8.44 37.16 0.31 -2.64 16 13 C -0.16 -3.74 7.25 37.16 0.27 -3.47 16 14 C -0.52 -13.47 7.53 -34.44 -0.26 -13.73 16 15 H 0.08 2.37 7.99 -52.49 -0.42 1.95 16 16 C 0.08 2.08 4.09 -17.82 -0.07 2.00 16 17 N -0.88 -24.86 13.96 55.43 0.77 -24.09 16 18 Si 0.88 20.86 21.67 -169.99 -3.68 17.17 16 19 H -0.29 -7.07 6.95 56.52 0.39 -6.68 16 20 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.24 -5.34 3.85 56.52 0.22 -5.13 16 22 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.76 4.71 -51.92 -0.24 0.51 16 24 H 0.11 2.42 3.70 -51.93 -0.19 2.23 16 25 H 0.08 1.33 7.18 -51.93 -0.37 0.96 16 26 H 0.09 1.12 6.76 -51.93 -0.35 0.77 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.05 1.02 6.87 -51.93 -0.36 0.66 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.03 0.82 3.02 -51.93 -0.16 0.66 16 35 H 0.07 1.56 5.96 -51.93 -0.31 1.25 16 36 H 0.05 1.28 8.12 -51.93 -0.42 0.85 16 37 H 0.27 7.14 8.31 -40.82 -0.34 6.81 16 LS Contribution 270.43 15.07 4.08 4.08 Total: -1.00 -30.68 270.43 -4.90 -35.58 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.52 Total: 2.40 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 0.45 Total: -2.23 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.54 Total: -36.93 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.76 Total: -20.06 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -3.68 Total: 17.17 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.68 -4.90 -35.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260324207.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.644 kcal (2) G-P(sol) polarization free energy of solvation -30.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds