Wall clock time and date at job start Mon Mar 30 2020 04:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34776 * 119.99780 * 2 1 4 4 O 1.21283 * 119.99373 * 184.76260 * 3 2 1 5 5 C 1.50696 * 120.00356 * 4.75576 * 3 2 1 6 6 H 1.09004 * 109.81870 * 46.81604 * 5 3 2 7 7 C 1.54376 * 109.83423 * 285.92759 * 5 3 2 8 8 C 1.55453 * 102.18860 * 219.17921 * 7 5 3 9 9 C 1.54954 * 100.98375 * 34.03789 * 8 7 5 10 10 O 1.43236 * 109.83222 * 167.69813 * 5 3 2 11 11 C 1.46501 * 119.99790 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47096 * 247.05833 * 11 2 1 13 13 C 1.52995 * 109.46918 * 127.05685 * 11 2 1 14 14 C 1.50698 * 109.47249 * 7.05726 * 11 2 1 15 15 H 1.08002 * 120.00018 * 245.21846 * 14 11 2 16 16 C 1.37881 * 119.99959 * 65.49020 * 14 11 2 17 17 N 1.31516 * 119.99930 * 178.58521 * 16 14 11 18 18 Si 1.86796 * 119.99992 * 358.58157 * 16 14 11 19 19 H 1.48502 * 109.46933 * 89.77068 * 18 16 14 20 20 H 1.48500 * 109.47365 * 209.76769 * 18 16 14 21 21 H 1.48499 * 109.47183 * 329.76989 * 18 16 14 22 22 H 1.09000 * 109.47311 * 275.13994 * 1 2 3 23 23 H 1.09007 * 109.47135 * 35.13905 * 1 2 3 24 24 H 1.08998 * 109.47235 * 155.13937 * 1 2 3 25 25 H 1.08999 * 110.84511 * 337.32102 * 7 5 3 26 26 H 1.09002 * 110.84839 * 100.93819 * 7 5 3 27 27 H 1.08997 * 111.05915 * 276.12692 * 8 7 5 28 28 H 1.08998 * 111.14642 * 151.98900 * 8 7 5 29 29 H 1.09000 * 110.30283 * 204.68943 * 9 8 7 30 30 H 1.09003 * 110.39129 * 82.56808 * 9 8 7 31 31 H 1.09000 * 109.47211 * 180.02562 * 12 11 2 32 32 H 1.08999 * 109.46793 * 300.00356 * 12 11 2 33 33 H 1.09005 * 109.47016 * 59.99968 * 12 11 2 34 34 H 1.09000 * 109.47610 * 308.63248 * 13 11 2 35 35 H 1.09005 * 109.47221 * 68.62851 * 13 11 2 36 36 H 1.09004 * 109.47262 * 188.63052 * 13 11 2 37 37 H 0.97000 * 119.99850 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3485 1.1689 -0.0872 5 6 1.3893 2.4701 0.1082 6 1 0.6524 2.4071 0.9090 7 6 0.6840 2.7812 -1.2293 8 6 0.8844 4.3175 -1.3565 9 6 2.2783 4.4886 -0.7016 10 8 2.3063 3.5376 0.3746 11 6 2.1975 -1.2688 0.0006 12 6 2.9394 -1.4287 1.3290 13 6 3.2052 -1.2763 -1.1506 14 6 1.2275 -2.4089 -0.1735 15 1 1.0867 -3.1245 0.6231 16 6 0.5240 -2.5417 -1.3518 17 7 -0.3018 -3.5523 -1.5144 18 14 0.7435 -1.2860 -2.7173 19 1 1.8479 -1.7160 -3.6121 20 1 -0.5144 -1.1800 -3.4993 21 1 1.0717 0.0360 -2.1260 22 1 -0.3634 0.0921 1.0235 23 1 -0.3634 0.8404 -0.5915 24 1 -0.3633 -0.9324 -0.4320 25 1 1.1676 2.2575 -2.0539 26 1 -0.3754 2.5299 -1.1769 27 1 0.1199 4.8596 -0.8001 28 1 0.9008 4.6267 -2.4015 29 1 2.3928 5.5012 -0.3148 30 1 3.0661 4.2681 -1.4220 31 1 3.4848 -2.3725 1.3293 32 1 3.6410 -0.6041 1.4549 33 1 2.2214 -1.4233 2.1492 34 1 2.6990 -1.0104 -2.0785 35 1 3.9946 -0.5526 -0.9472 36 1 3.6402 -2.2712 -1.2462 37 1 -0.7964 -3.6459 -2.3435 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260324207.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:57 Heat of formation + Delta-G solvation = -71.891328 kcal Electronic energy + Delta-G solvation = -19221.724568 eV Core-core repulsion = 16385.667206 eV Total energy + Delta-G solvation = -2836.057362 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.62751 -39.73663 -37.42702 -34.68031 -33.83550 -32.87394 -30.29820 -28.38223 -28.09195 -26.41010 -24.64811 -22.71364 -21.99406 -19.96133 -18.96648 -18.23223 -17.40905 -17.07165 -16.52232 -16.38226 -16.00323 -15.29436 -15.05732 -14.59555 -14.44783 -14.20084 -14.08748 -13.78823 -13.34049 -12.98695 -12.84166 -12.75950 -12.48791 -12.44350 -12.17759 -12.11183 -11.92036 -11.88494 -11.48853 -11.17038 -10.95148 -10.75573 -9.95955 -9.22242 -8.41493 -6.48385 1.25775 1.33775 1.45459 1.73787 2.14656 2.24202 2.92528 3.11345 3.44304 3.63878 3.83767 4.07007 4.19181 4.28639 4.35604 4.43444 4.48767 4.67531 4.74780 4.75284 4.80341 4.84348 4.88267 4.92220 4.94633 5.06398 5.16708 5.19359 5.28131 5.39359 5.43169 5.83583 5.97484 6.25585 6.55372 6.91489 7.18829 7.42287 8.71598 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.029443 B = 0.010326 C = 0.008929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.768909 B = 2710.939398 C = 3135.253826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.590 5.590 3 C 0.483 3.517 4 O -0.578 6.578 5 C 0.065 3.935 6 H 0.121 0.879 7 C -0.150 4.150 8 C -0.138 4.138 9 C 0.038 3.962 10 O -0.384 6.384 11 C 0.251 3.749 12 C -0.127 4.127 13 C -0.153 4.153 14 C -0.515 4.515 15 H 0.050 0.950 16 C 0.047 3.953 17 N -0.923 5.923 18 Si 0.933 3.067 19 H -0.303 1.303 20 H -0.294 1.294 21 H -0.220 1.220 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.061 0.939 26 H 0.117 0.883 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.047 0.953 34 H 0.029 0.971 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.989 15.601 -0.431 15.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.324 5.324 3 C 0.272 3.728 4 O -0.459 6.459 5 C 0.004 3.996 6 H 0.138 0.862 7 C -0.188 4.188 8 C -0.176 4.176 9 C -0.038 4.038 10 O -0.302 6.302 11 C 0.169 3.831 12 C -0.185 4.185 13 C -0.211 4.211 14 C -0.553 4.553 15 H 0.068 0.932 16 C -0.155 4.155 17 N -0.560 5.560 18 Si 0.762 3.238 19 H -0.232 1.232 20 H -0.222 1.222 21 H -0.143 1.143 22 H 0.083 0.917 23 H 0.099 0.901 24 H 0.100 0.900 25 H 0.080 0.920 26 H 0.135 0.865 27 H 0.124 0.876 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.370 15.507 -0.374 15.572 hybrid contribution 0.080 -0.465 -0.906 1.022 sum -1.290 15.042 -1.280 15.152 Atomic orbital electron populations 1.22132 0.79896 1.04187 1.02513 1.49025 1.07663 1.05573 1.70101 1.21563 0.88244 0.86548 0.76490 1.90530 1.15802 1.87771 1.51838 1.22803 0.90782 0.85163 1.00806 0.86190 1.23267 1.02690 0.98269 0.94583 1.23305 0.96963 0.93664 1.03627 1.23676 0.97556 0.93461 0.89090 1.88447 1.63830 1.33947 1.43996 1.18443 0.90072 0.81533 0.93012 1.21816 0.99262 1.00530 0.96927 1.22435 0.99976 1.01089 0.97596 1.21040 1.23450 1.09519 1.01323 0.93192 1.25665 0.93718 0.96393 0.99723 1.70009 1.27520 1.31079 1.27395 0.86495 0.75214 0.83282 0.78823 1.23216 1.22231 1.14299 0.91702 0.90130 0.90008 0.92044 0.86513 0.87614 0.87766 0.86994 0.93485 0.92451 0.93809 0.93384 0.95242 0.91747 0.92886 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.98 7.31 127.77 0.93 2.91 16 2 N -0.59 -24.57 1.40 -803.41 -1.12 -25.69 16 3 C 0.48 19.61 5.86 87.66 0.51 20.13 16 4 O -0.58 -27.45 12.97 15.47 0.20 -27.25 16 5 C 0.07 2.02 3.14 30.31 0.10 2.11 16 6 H 0.12 3.17 7.78 -2.39 -0.02 3.15 16 7 C -0.15 -3.63 5.39 31.91 0.17 -3.46 16 8 C -0.14 -2.41 7.16 32.11 0.23 -2.18 16 9 C 0.04 0.88 7.78 72.65 0.57 1.44 16 10 O -0.38 -12.47 10.59 -130.47 -1.38 -13.85 16 11 C 0.25 11.76 0.61 2.86 0.00 11.76 16 12 C -0.13 -5.56 8.44 71.98 0.61 -4.95 16 13 C -0.15 -7.23 7.25 71.98 0.52 -6.71 16 14 C -0.52 -27.28 7.53 25.60 0.19 -27.09 16 15 H 0.05 2.93 7.99 -2.91 -0.02 2.91 16 16 C 0.05 2.48 4.09 84.66 0.35 2.82 16 17 N -0.92 -52.79 13.96 21.45 0.30 -52.49 16 18 Si 0.93 42.61 21.67 68.60 1.49 44.09 16 19 H -0.30 -14.65 6.95 99.48 0.69 -13.96 16 20 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 21 H -0.22 -9.16 3.85 99.48 0.38 -8.78 16 22 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.08 2.32 4.71 -2.38 -0.01 2.31 16 24 H 0.08 3.50 3.70 -2.39 -0.01 3.49 16 25 H 0.06 1.77 7.18 -2.39 -0.02 1.75 16 26 H 0.12 2.22 6.76 -2.39 -0.02 2.20 16 27 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.04 1.91 6.87 -2.39 -0.02 1.89 16 33 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.03 1.39 3.02 -2.39 -0.01 1.39 16 35 H 0.06 3.05 5.96 -2.38 -0.01 3.04 16 36 H 0.05 2.45 8.12 -2.38 -0.02 2.43 16 37 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -67.17 270.43 4.38 -62.78 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.72 Total: 15.62 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 4.18 Total: -3.22 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -0.82 Total: -78.18 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -1.18 Total: -41.10 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.49 Total: 44.09 kcal Total: -67.17 4.38 -62.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260324207.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.107 kcal (2) G-P(sol) polarization free energy of solvation -67.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds