Wall clock time and date at job start Mon Mar 30 2020 03:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00000 * 2 1 4 4 H 1.48498 * 109.47192 * 275.10419 * 3 2 1 5 5 H 1.48506 * 109.46973 * 35.10084 * 3 2 1 6 6 H 1.48498 * 109.47437 * 155.09691 * 3 2 1 7 7 C 1.37881 * 120.00472 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99285 * 356.24351 * 7 2 1 9 9 C 1.50693 * 120.00347 * 176.23665 * 7 2 1 10 10 N 1.46905 * 110.43733 * 305.04134 * 9 7 2 11 11 C 1.46893 * 110.99995 * 302.21700 * 10 9 7 12 12 C 1.52995 * 109.47393 * 175.35510 * 11 10 9 13 13 H 1.08997 * 110.67619 * 57.03263 * 12 11 10 14 14 C 1.54998 * 110.62067 * 179.97438 * 12 11 10 15 15 C 1.54815 * 102.09354 * 155.52214 * 14 12 11 16 16 C 1.54100 * 104.18748 * 339.11845 * 15 14 12 17 17 O 1.43746 * 107.29445 * 357.97403 * 16 15 14 18 18 C 1.54815 * 110.60180 * 67.65904 * 9 7 2 19 19 C 1.55003 * 102.08929 * 97.85051 * 18 9 7 20 20 O 1.44377 * 103.48881 * 37.02768 * 19 18 9 21 21 C 1.43745 * 106.97464 * 319.93700 * 20 19 18 22 22 H 0.97001 * 119.99918 * 359.97438 * 1 2 3 23 23 H 1.00900 * 111.00031 * 66.17007 * 10 9 7 24 24 H 1.09001 * 109.47439 * 55.35013 * 11 10 9 25 25 H 1.09002 * 109.47003 * 295.35236 * 11 10 9 26 26 H 1.08993 * 110.90738 * 37.32398 * 14 12 11 27 27 H 1.08998 * 110.90334 * 273.72079 * 14 12 11 28 28 H 1.08995 * 110.48409 * 97.79285 * 15 14 12 29 29 H 1.08993 * 110.48937 * 220.44356 * 15 14 12 30 30 H 1.09006 * 109.87804 * 117.38996 * 16 15 14 31 31 H 1.08993 * 109.88168 * 238.39470 * 16 15 14 32 32 H 1.08993 * 110.91094 * 216.05131 * 18 9 7 33 33 H 1.09001 * 110.90359 * 339.65794 * 18 9 7 34 34 H 1.08996 * 110.61615 * 278.52705 * 19 18 9 35 35 H 1.08999 * 110.61275 * 155.52832 * 19 18 9 36 36 H 1.08997 * 109.88067 * 267.08849 * 21 20 19 37 37 H 1.09002 * 110.00071 * 146.00850 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3888 2.1087 -1.3945 5 1 1.5046 2.6192 0.8051 6 1 3.5964 1.4116 0.5895 7 6 2.0046 -1.1940 -0.0005 8 1 1.4663 -2.1283 0.0603 9 6 3.5091 -1.1954 -0.0862 10 7 3.9564 -0.4423 -1.2656 11 6 3.3838 -1.0031 -2.4966 12 6 3.7769 -0.1267 -3.6874 13 1 4.8610 -0.0399 -3.7601 14 6 3.1860 -0.6957 -5.0025 15 6 3.1210 0.5638 -5.9005 16 6 3.1450 1.7394 -4.9045 17 8 3.1679 1.1781 -3.5813 18 6 4.1286 -0.6019 1.2025 19 6 4.4820 -1.8770 2.0099 20 8 4.9195 -2.8071 0.9960 21 6 4.0454 -2.6392 -0.1328 22 1 -0.4850 0.8401 0.0004 23 1 3.7317 0.5372 -1.1758 24 1 2.2975 -1.0338 -2.4109 25 1 3.7650 -2.0131 -2.6473 26 1 2.1902 -1.1063 -4.8359 27 1 3.8480 -1.4468 -5.4333 28 1 3.9867 0.6061 -6.5614 29 1 2.1973 0.5727 -6.4789 30 1 4.0375 2.3440 -5.0660 31 1 2.2535 2.3530 -5.0338 32 1 5.0250 -0.0256 0.9736 33 1 3.4016 0.0086 1.7381 34 1 3.6024 -2.2594 2.5277 35 1 5.2864 -1.6731 2.7166 36 1 3.2170 -3.3446 -0.0683 37 1 4.5974 -2.7998 -1.0589 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260388381.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:48 Heat of formation + Delta-G solvation = -76.822132 kcal Electronic energy + Delta-G solvation = -18772.903366 eV Core-core repulsion = 15936.632188 eV Total energy + Delta-G solvation = -2836.271178 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.26156 -38.60043 -35.13818 -32.30631 -31.84253 -30.80099 -28.94226 -27.28715 -24.80630 -24.25259 -22.03750 -21.21125 -20.46171 -19.31422 -16.71801 -16.43909 -15.92044 -15.35467 -15.18979 -14.86367 -14.39652 -14.02080 -13.88567 -13.18664 -12.69580 -12.51474 -12.44064 -12.04177 -11.72208 -11.49050 -11.40278 -11.07531 -10.97533 -10.58602 -10.50689 -10.37318 -10.07417 -9.83662 -9.58246 -9.29026 -9.18370 -8.78732 -8.61729 -7.31241 -6.20594 -4.24392 3.32201 3.34593 3.44854 4.19495 4.35113 4.74540 4.80987 4.86602 5.02946 5.11463 5.24824 5.49204 5.60705 5.74217 5.77098 5.87833 5.89061 5.93059 5.96051 6.06299 6.09957 6.24766 6.29708 6.38213 6.45994 6.64126 6.75087 6.85367 6.89825 6.97176 7.33176 7.42618 7.73644 7.92960 8.31705 8.49877 8.80750 9.40991 10.91037 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.022976 B = 0.010147 C = 0.008286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.394201 B = 2758.788057 C = 3378.508200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.084 3.916 3 Si 0.835 3.165 4 H -0.249 1.249 5 H -0.297 1.297 6 H -0.240 1.240 7 C -0.540 4.540 8 H 0.076 0.924 9 C 0.176 3.824 10 N -0.681 5.681 11 C 0.066 3.934 12 C 0.074 3.926 13 H 0.069 0.931 14 C -0.149 4.149 15 C -0.154 4.154 16 C 0.045 3.955 17 O -0.365 6.365 18 C -0.144 4.144 19 C 0.056 3.944 20 O -0.393 6.393 21 C 0.070 3.930 22 H 0.265 0.735 23 H 0.327 0.673 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.076 0.915 -7.730 10.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.120 4.120 3 Si 0.663 3.337 4 H -0.174 1.174 5 H -0.224 1.224 6 H -0.165 1.165 7 C -0.579 4.579 8 H 0.094 0.906 9 C 0.086 3.914 10 N -0.317 5.317 11 C -0.064 4.064 12 C 0.016 3.984 13 H 0.087 0.913 14 C -0.187 4.187 15 C -0.192 4.192 16 C -0.033 4.033 17 O -0.284 6.284 18 C -0.183 4.183 19 C -0.021 4.021 20 O -0.312 6.312 21 C -0.007 4.007 22 H 0.075 0.925 23 H 0.150 0.850 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.595 0.636 -7.582 10.751 hybrid contribution -0.857 1.425 -0.207 1.676 sum 6.739 2.062 -7.789 10.504 Atomic orbital electron populations 1.69901 1.06351 1.27179 1.48968 1.24949 0.94685 0.99031 0.93382 0.87737 0.81386 0.84160 0.80403 1.17446 1.22421 1.16480 1.21402 0.89027 0.94854 1.52592 0.90591 1.20194 0.94115 0.90242 0.86843 1.61346 1.61486 1.06489 1.02386 1.21866 1.00580 0.96047 0.87883 1.23357 0.96724 0.83320 0.94994 0.91296 1.23138 1.02620 0.97508 0.95413 1.22909 1.02422 0.95282 0.98569 1.23073 1.01110 0.95791 0.83286 1.89065 1.81798 1.31378 1.26182 1.23534 1.00019 0.97103 0.97634 1.23389 0.98435 0.89074 0.91230 1.88694 1.55281 1.60822 1.26444 1.23178 0.92324 0.96849 0.88382 0.92511 0.85049 0.91722 0.90822 0.90139 0.90439 0.91106 0.90814 0.93028 0.90470 0.92110 0.90826 0.92421 0.90670 0.92797 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 2 C 0.08 2.35 5.31 -17.82 -0.09 2.25 16 3 Si 0.84 20.65 23.14 -169.99 -3.93 16.72 16 4 H -0.25 -6.22 6.17 56.52 0.35 -5.87 16 5 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.24 -5.58 4.48 56.52 0.25 -5.32 16 7 C -0.54 -14.54 7.17 -34.44 -0.25 -14.78 16 8 H 0.08 2.24 7.60 -52.49 -0.40 1.84 16 9 C 0.18 4.08 0.48 -131.23 -0.06 4.02 16 10 N -0.68 -15.16 5.92 -99.59 -0.59 -15.75 16 11 C 0.07 1.33 4.91 -3.83 -0.02 1.31 16 12 C 0.07 1.28 3.56 -25.68 -0.09 1.19 16 13 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 14 C -0.15 -2.06 6.59 -24.72 -0.16 -2.22 16 15 C -0.15 -1.87 7.01 -25.20 -0.18 -2.05 16 16 C 0.04 0.65 7.70 37.73 0.29 0.94 16 17 O -0.37 -7.16 9.87 -35.23 -0.35 -7.51 16 18 C -0.14 -3.16 4.31 -24.72 -0.11 -3.27 16 19 C 0.06 1.09 7.72 38.22 0.29 1.39 16 20 O -0.39 -8.38 11.52 -35.23 -0.41 -8.79 16 21 C 0.07 1.50 6.66 37.73 0.25 1.75 16 22 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 23 H 0.33 7.66 3.39 -39.29 -0.13 7.52 16 24 H 0.06 1.53 6.83 -51.93 -0.35 1.17 16 25 H 0.07 1.35 6.72 -51.93 -0.35 1.00 16 26 H 0.08 1.18 8.06 -51.93 -0.42 0.76 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.06 1.29 7.81 -51.93 -0.41 0.89 16 33 H 0.07 1.68 5.65 -51.93 -0.29 1.38 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.05 1.18 7.40 -51.93 -0.38 0.80 16 37 H 0.07 1.44 6.62 -51.93 -0.34 1.10 16 LS Contribution 277.10 15.07 4.18 4.18 Total: -1.00 -30.49 277.10 -6.25 -36.74 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -5.80 Total: 9.66 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -0.12 Total: -9.47 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.18 Total: -41.53 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.75 Total: -16.30 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -3.93 Total: 16.72 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.49 -6.25 -36.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260388381.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.086 kcal (2) G-P(sol) polarization free energy of solvation -30.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds