Wall clock time and date at job start Mon Mar 30 2020 03:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00000 * 2 1 4 4 H 1.48498 * 109.47192 * 275.10419 * 3 2 1 5 5 H 1.48506 * 109.46973 * 35.10084 * 3 2 1 6 6 H 1.48498 * 109.47437 * 155.09691 * 3 2 1 7 7 C 1.37881 * 120.00472 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99285 * 356.24351 * 7 2 1 9 9 C 1.50693 * 120.00347 * 176.23665 * 7 2 1 10 10 N 1.46905 * 110.43733 * 305.04134 * 9 7 2 11 11 C 1.46893 * 110.99995 * 302.21700 * 10 9 7 12 12 C 1.52995 * 109.47393 * 175.35510 * 11 10 9 13 13 H 1.08997 * 110.67619 * 57.03263 * 12 11 10 14 14 C 1.54998 * 110.62067 * 179.97438 * 12 11 10 15 15 C 1.54815 * 102.09354 * 155.52214 * 14 12 11 16 16 C 1.54100 * 104.18748 * 339.11845 * 15 14 12 17 17 O 1.43746 * 107.29445 * 357.97403 * 16 15 14 18 18 C 1.54815 * 110.60180 * 67.65904 * 9 7 2 19 19 C 1.55003 * 102.08929 * 97.85051 * 18 9 7 20 20 O 1.44377 * 103.48881 * 37.02768 * 19 18 9 21 21 C 1.43745 * 106.97464 * 319.93700 * 20 19 18 22 22 H 0.97001 * 119.99918 * 359.97438 * 1 2 3 23 23 H 1.00900 * 111.00031 * 66.17007 * 10 9 7 24 24 H 1.09001 * 109.47439 * 55.35013 * 11 10 9 25 25 H 1.09002 * 109.47003 * 295.35236 * 11 10 9 26 26 H 1.08993 * 110.90738 * 37.32398 * 14 12 11 27 27 H 1.08998 * 110.90334 * 273.72079 * 14 12 11 28 28 H 1.08995 * 110.48409 * 97.79285 * 15 14 12 29 29 H 1.08993 * 110.48937 * 220.44356 * 15 14 12 30 30 H 1.09006 * 109.87804 * 117.38996 * 16 15 14 31 31 H 1.08993 * 109.88168 * 238.39470 * 16 15 14 32 32 H 1.08993 * 110.91094 * 216.05131 * 18 9 7 33 33 H 1.09001 * 110.90359 * 339.65794 * 18 9 7 34 34 H 1.08996 * 110.61615 * 278.52705 * 19 18 9 35 35 H 1.08999 * 110.61275 * 155.52832 * 19 18 9 36 36 H 1.08997 * 109.88067 * 267.08849 * 21 20 19 37 37 H 1.09002 * 110.00071 * 146.00850 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3888 2.1087 -1.3945 5 1 1.5046 2.6192 0.8051 6 1 3.5964 1.4116 0.5895 7 6 2.0046 -1.1940 -0.0005 8 1 1.4663 -2.1283 0.0603 9 6 3.5091 -1.1954 -0.0862 10 7 3.9564 -0.4423 -1.2656 11 6 3.3838 -1.0031 -2.4966 12 6 3.7769 -0.1267 -3.6874 13 1 4.8610 -0.0399 -3.7601 14 6 3.1860 -0.6957 -5.0025 15 6 3.1210 0.5638 -5.9005 16 6 3.1450 1.7394 -4.9045 17 8 3.1679 1.1781 -3.5813 18 6 4.1286 -0.6019 1.2025 19 6 4.4820 -1.8770 2.0099 20 8 4.9195 -2.8071 0.9960 21 6 4.0454 -2.6392 -0.1328 22 1 -0.4850 0.8401 0.0004 23 1 3.7317 0.5372 -1.1758 24 1 2.2975 -1.0338 -2.4109 25 1 3.7650 -2.0131 -2.6473 26 1 2.1902 -1.1063 -4.8359 27 1 3.8480 -1.4468 -5.4333 28 1 3.9867 0.6061 -6.5614 29 1 2.1973 0.5727 -6.4789 30 1 4.0375 2.3440 -5.0660 31 1 2.2535 2.3530 -5.0338 32 1 5.0250 -0.0256 0.9736 33 1 3.4016 0.0086 1.7381 34 1 3.6024 -2.2594 2.5277 35 1 5.2864 -1.6731 2.7166 36 1 3.2170 -3.3446 -0.0683 37 1 4.5974 -2.7998 -1.0589 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260388381.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:48 Heat of formation + Delta-G solvation = -100.767767 kcal Electronic energy + Delta-G solvation = -18773.941727 eV Core-core repulsion = 15936.632188 eV Total energy + Delta-G solvation = -2837.309538 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.77603 -40.09789 -36.87844 -34.33471 -33.08121 -32.44535 -30.46290 -28.92522 -26.85334 -25.74461 -23.60176 -22.34587 -21.89011 -21.18239 -18.70667 -17.89289 -17.39320 -17.19606 -16.64035 -16.14797 -16.05603 -15.76367 -15.55584 -14.70921 -14.38437 -14.37486 -14.08632 -13.55229 -13.17329 -12.99426 -12.81956 -12.70543 -12.47710 -12.37444 -12.09119 -11.72977 -11.59930 -11.51441 -11.37131 -11.15650 -10.76318 -10.56493 -10.47907 -9.18121 -8.40394 -6.46115 1.30126 1.36330 1.41827 2.25355 2.91126 2.99755 3.17837 3.38675 3.69119 3.93937 4.01707 4.05579 4.24711 4.27265 4.35730 4.41398 4.51734 4.53642 4.69136 4.78574 4.80793 4.89795 4.92226 4.94137 4.99539 5.08934 5.13818 5.19301 5.21505 5.28607 5.46900 5.89184 5.99111 6.08474 6.46408 6.50965 6.59255 7.22066 8.74762 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.022976 B = 0.010147 C = 0.008286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.394201 B = 2758.788057 C = 3378.508200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.036 3.964 3 Si 0.892 3.108 4 H -0.253 1.253 5 H -0.305 1.305 6 H -0.213 1.213 7 C -0.530 4.530 8 H 0.035 0.965 9 C 0.170 3.830 10 N -0.673 5.673 11 C 0.067 3.933 12 C 0.072 3.928 13 H 0.085 0.915 14 C -0.145 4.145 15 C -0.144 4.144 16 C 0.033 3.967 17 O -0.409 6.409 18 C -0.148 4.148 19 C 0.057 3.943 20 O -0.395 6.395 21 C 0.075 3.925 22 H 0.264 0.736 23 H 0.320 0.680 24 H 0.021 0.979 25 H 0.091 0.909 26 H 0.062 0.938 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.115 0.885 36 H 0.041 0.959 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.729 1.298 -8.749 13.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.164 4.164 3 Si 0.718 3.282 4 H -0.178 1.178 5 H -0.234 1.234 6 H -0.136 1.136 7 C -0.569 4.569 8 H 0.054 0.946 9 C 0.079 3.921 10 N -0.308 5.308 11 C -0.063 4.063 12 C 0.015 3.985 13 H 0.103 0.897 14 C -0.183 4.183 15 C -0.181 4.181 16 C -0.044 4.044 17 O -0.329 6.329 18 C -0.186 4.186 19 C -0.019 4.019 20 O -0.314 6.314 21 C -0.002 4.002 22 H 0.073 0.927 23 H 0.142 0.858 24 H 0.039 0.961 25 H 0.109 0.891 26 H 0.081 0.919 27 H 0.125 0.875 28 H 0.118 0.882 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.133 0.867 36 H 0.060 0.940 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.275 1.000 -8.606 13.440 hybrid contribution -1.724 1.224 0.101 2.117 sum 8.551 2.224 -8.505 12.264 Atomic orbital electron populations 1.70034 1.08110 1.27825 1.51502 1.25625 0.95162 1.02276 0.93332 0.86852 0.81373 0.79946 0.80025 1.17849 1.23387 1.13600 1.21567 0.91307 0.93033 1.50990 0.94624 1.20215 0.91609 0.91995 0.88253 1.61406 1.60860 1.05919 1.02610 1.21920 0.97812 0.97934 0.88608 1.23400 0.97551 0.82617 0.94966 0.89733 1.23129 1.02065 0.98944 0.94164 1.22901 1.04416 0.92840 0.97969 1.23352 1.02072 0.96894 0.82051 1.89005 1.82313 1.32368 1.29218 1.23514 1.00043 0.98204 0.96868 1.23525 0.99868 0.87436 0.91111 1.88694 1.54942 1.61245 1.26513 1.23058 0.92338 0.95291 0.89507 0.92707 0.85843 0.96059 0.89074 0.91884 0.87531 0.88188 0.89714 0.91214 0.90491 0.90717 0.91974 0.92929 0.86712 0.94041 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.26 13.96 21.45 0.30 -57.96 16 2 C 0.04 2.05 5.31 84.66 0.45 2.50 16 3 Si 0.89 43.45 23.14 68.60 1.59 45.03 16 4 H -0.25 -12.46 6.17 99.48 0.61 -11.84 16 5 H -0.31 -15.22 7.11 99.48 0.71 -14.51 16 6 H -0.21 -9.33 4.48 99.48 0.45 -8.88 16 7 C -0.53 -29.31 7.17 25.60 0.18 -29.13 16 8 H 0.04 2.21 7.60 -2.91 -0.02 2.19 16 9 C 0.17 7.75 0.48 3.77 0.00 7.75 16 10 N -0.67 -29.07 5.92 -468.99 -2.77 -31.85 16 11 C 0.07 2.66 4.91 86.30 0.42 3.08 16 12 C 0.07 2.37 3.56 31.28 0.11 2.48 16 13 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 14 C -0.14 -3.68 6.59 31.90 0.21 -3.47 16 15 C -0.14 -3.03 7.01 31.59 0.22 -2.81 16 16 C 0.03 0.89 7.70 72.35 0.56 1.45 16 17 O -0.41 -15.60 9.87 -148.98 -1.47 -17.07 16 18 C -0.15 -6.16 4.31 31.90 0.14 -6.03 16 19 C 0.06 2.10 7.72 72.67 0.56 2.66 16 20 O -0.39 -15.85 11.52 -148.98 -1.72 -17.57 16 21 C 0.08 3.14 6.66 72.35 0.48 3.63 16 22 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 23 H 0.32 14.54 3.39 -89.69 -0.30 14.24 16 24 H 0.02 1.03 6.83 -2.39 -0.02 1.01 16 25 H 0.09 3.23 6.72 -2.39 -0.02 3.22 16 26 H 0.06 1.81 8.06 -2.39 -0.02 1.79 16 27 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.07 2.92 7.81 -2.39 -0.02 2.90 16 33 H 0.06 2.72 5.65 -2.39 -0.01 2.71 16 34 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 36 H 0.04 1.83 7.40 -2.39 -0.02 1.81 16 37 H 0.09 3.41 6.62 -2.39 -0.02 3.39 16 Total: -1.00 -67.46 277.10 -0.34 -67.80 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.40 Total: 29.51 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: 3.34 Total: -17.89 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -2.48 Total: -89.81 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -3.19 Total: -34.64 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.59 Total: 45.03 kcal Total: -67.46 -0.34 -67.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260388381.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.972 kcal (2) G-P(sol) polarization free energy of solvation -67.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds