Wall clock time and date at job start Mon Mar 30 2020 03:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99953 * 2 1 4 4 H 1.48500 * 109.47151 * 275.34752 * 3 2 1 5 5 H 1.48494 * 109.47004 * 35.34971 * 3 2 1 6 6 H 1.48504 * 109.47042 * 155.35116 * 3 2 1 7 7 C 1.37881 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00314 * 348.78377 * 7 2 1 9 9 C 1.50704 * 119.99805 * 168.77742 * 7 2 1 10 10 N 1.46905 * 110.45225 * 87.13739 * 9 7 2 11 11 C 1.46898 * 111.00092 * 62.60979 * 10 9 7 12 12 C 1.53001 * 109.47227 * 184.54861 * 11 10 9 13 13 H 1.09000 * 109.87370 * 53.85583 * 12 11 10 14 14 C 1.54101 * 109.88075 * 174.86501 * 12 11 10 15 15 C 1.54811 * 104.18647 * 121.44841 * 14 12 11 16 16 C 1.54998 * 102.09129 * 20.88417 * 15 14 12 17 17 O 1.43747 * 109.87715 * 292.69561 * 12 11 10 18 18 C 1.54502 * 110.51244 * 324.53538 * 9 7 2 19 19 C 1.54481 * 104.06315 * 241.21333 * 18 9 7 20 20 O 1.44423 * 104.80201 * 23.97868 * 19 18 9 21 21 C 1.44430 * 105.27549 * 319.48925 * 20 19 18 22 22 H 0.97001 * 120.00412 * 359.97438 * 1 2 3 23 23 H 1.00902 * 111.00408 * 298.65231 * 10 9 7 24 24 H 1.09001 * 109.47066 * 64.54293 * 11 10 9 25 25 H 1.09001 * 109.46944 * 304.54281 * 11 10 9 26 26 H 1.08998 * 110.48767 * 240.13041 * 14 12 11 27 27 H 1.08998 * 110.48333 * 2.64414 * 14 12 11 28 28 H 1.09007 * 110.90303 * 139.07487 * 15 14 12 29 29 H 1.08989 * 110.91393 * 262.68082 * 15 14 12 30 30 H 1.09000 * 110.61722 * 81.47530 * 16 15 14 31 31 H 1.09000 * 110.61849 * 204.31167 * 16 15 14 32 32 H 1.08997 * 110.51665 * 359.85960 * 18 9 7 33 33 H 1.09001 * 110.51426 * 122.57274 * 18 9 7 34 34 H 1.09003 * 110.37285 * 142.80597 * 19 18 9 35 35 H 1.08999 * 110.37526 * 265.15021 * 19 18 9 36 36 H 1.08999 * 110.36838 * 281.68255 * 21 20 19 37 37 H 1.09000 * 110.37330 * 159.34391 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3836 2.1117 -1.3940 5 1 1.5076 2.6173 0.8100 6 1 3.5986 1.4101 0.5839 7 6 2.0045 -1.1941 0.0005 8 1 1.4800 -2.1204 0.1829 9 6 3.4899 -1.2067 -0.2535 10 7 4.2270 -1.0082 1.0017 11 6 3.9659 -2.1040 1.9445 12 6 4.6574 -1.8064 3.2765 13 1 4.3558 -0.8238 3.6393 14 6 4.2849 -2.8846 4.3126 15 6 5.6454 -3.4903 4.7357 16 6 6.6384 -2.3695 4.3355 17 8 6.0842 -1.8514 3.1071 18 6 3.8723 -0.1203 -1.2834 19 6 4.4838 -0.9155 -2.4582 20 8 3.9173 -2.2390 -2.3424 21 6 3.9156 -2.5297 -0.9277 22 1 -0.4851 0.8400 0.0004 23 1 4.0041 -0.1149 1.4147 24 1 4.3534 -3.0365 1.5342 25 1 2.8918 -2.1964 2.1056 26 1 3.7851 -2.4334 5.1697 27 1 3.6504 -3.6461 3.8594 28 1 5.6739 -3.6696 5.8105 29 1 5.8512 -4.4075 4.1841 30 1 6.6694 -1.5932 5.1000 31 1 7.6337 -2.7806 4.1670 32 1 2.9867 0.4242 -1.6108 33 1 4.6083 0.5640 -0.8614 34 1 4.2019 -0.4641 -3.4095 35 1 5.5689 -0.9577 -2.3639 36 1 4.9136 -2.8193 -0.5987 37 1 3.1974 -3.3183 -0.7032 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260388385.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:50 Heat of formation + Delta-G solvation = -75.897120 kcal Electronic energy + Delta-G solvation = -18545.275828 eV Core-core repulsion = 15709.044761 eV Total energy + Delta-G solvation = -2836.231066 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.29593 -38.63714 -34.99346 -32.51648 -31.87202 -30.78291 -29.00449 -27.26668 -24.88777 -24.04080 -22.18859 -21.54408 -20.44117 -19.38543 -16.81773 -16.09209 -15.92022 -15.39319 -15.18739 -15.04175 -14.50607 -14.05403 -13.62404 -13.45202 -13.09512 -12.44542 -12.33784 -12.17217 -11.75064 -11.55263 -11.36554 -11.06487 -11.00382 -10.68288 -10.49114 -10.43179 -10.27788 -9.87670 -9.60235 -9.31708 -9.19504 -8.82533 -8.68364 -7.22760 -6.22595 -4.23493 3.17216 3.26998 3.31776 4.13478 4.25299 4.71818 4.73749 4.91556 5.04855 5.08934 5.21997 5.37222 5.60420 5.65005 5.76486 5.78195 5.81264 5.83181 5.90124 5.93238 6.04863 6.18824 6.22362 6.39959 6.49719 6.53152 6.65848 6.68881 6.75445 6.89914 7.25556 7.52352 7.58886 8.08856 8.41239 8.45878 8.80830 9.40003 10.89222 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.023522 B = 0.008604 C = 0.007491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.099694 B = 3253.421810 C = 3736.954256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.074 3.926 3 Si 0.886 3.114 4 H -0.283 1.283 5 H -0.301 1.301 6 H -0.252 1.252 7 C -0.536 4.536 8 H 0.074 0.926 9 C 0.180 3.820 10 N -0.681 5.681 11 C 0.067 3.933 12 C 0.078 3.922 13 H 0.061 0.939 14 C -0.151 4.151 15 C -0.154 4.154 16 C 0.041 3.959 17 O -0.357 6.357 18 C -0.167 4.167 19 C 0.057 3.943 20 O -0.379 6.379 21 C 0.070 3.930 22 H 0.265 0.735 23 H 0.331 0.669 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.318 -3.011 7.097 12.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.210 1.210 5 H -0.230 1.230 6 H -0.177 1.177 7 C -0.575 4.575 8 H 0.093 0.907 9 C 0.091 3.909 10 N -0.314 5.314 11 C -0.063 4.063 12 C 0.020 3.980 13 H 0.079 0.921 14 C -0.189 4.189 15 C -0.192 4.192 16 C -0.036 4.036 17 O -0.276 6.276 18 C -0.205 4.205 19 C -0.020 4.020 20 O -0.297 6.297 21 C -0.007 4.007 22 H 0.075 0.925 23 H 0.150 0.850 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.767 -3.267 6.471 12.980 hybrid contribution -0.738 1.292 0.691 1.640 sum 10.029 -1.975 7.162 12.481 Atomic orbital electron populations 1.69949 1.06447 1.27187 1.48672 1.25124 0.94700 0.99278 0.93853 0.87113 0.80423 0.83306 0.77492 1.21011 1.22951 1.17659 1.21344 0.90781 0.95146 1.50243 0.90749 1.20136 0.92571 0.91080 0.87148 1.61274 1.60331 1.04369 1.05467 1.21953 0.98183 0.95915 0.90251 1.22888 0.81593 0.97541 0.95985 0.92060 1.22972 0.97776 0.99072 0.99119 1.23113 0.95299 0.99413 1.01365 1.23494 0.97616 0.94558 0.87906 1.89035 1.18967 1.85535 1.34025 1.23410 1.00527 0.99533 0.97036 1.23173 0.96367 0.83913 0.98548 1.89008 1.83708 1.32379 1.24652 1.23362 0.98915 0.98104 0.80347 0.92520 0.84976 0.91654 0.92374 0.90974 0.90121 0.90807 0.90657 0.92895 0.89579 0.90378 0.91213 0.90503 0.93254 0.93487 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.96 55.43 0.77 -25.58 16 2 C 0.07 2.07 5.21 -17.82 -0.09 1.97 16 3 Si 0.89 21.10 23.13 -169.99 -3.93 17.17 16 4 H -0.28 -6.69 6.71 56.52 0.38 -6.31 16 5 H -0.30 -7.30 7.11 56.52 0.40 -6.89 16 6 H -0.25 -5.56 4.48 56.52 0.25 -5.31 16 7 C -0.54 -14.46 7.54 -34.44 -0.26 -14.72 16 8 H 0.07 2.20 7.90 -52.49 -0.41 1.79 16 9 C 0.18 4.16 0.54 -131.19 -0.07 4.09 16 10 N -0.68 -14.52 6.00 -99.54 -0.60 -15.12 16 11 C 0.07 1.27 4.62 -3.82 -0.02 1.25 16 12 C 0.08 1.26 3.56 -26.16 -0.09 1.17 16 13 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 14 C -0.15 -1.94 6.64 -25.20 -0.17 -2.11 16 15 C -0.15 -1.69 7.15 -24.72 -0.18 -1.86 16 16 C 0.04 0.51 7.72 38.21 0.29 0.80 16 17 O -0.36 -5.99 11.17 -35.23 -0.39 -6.38 16 18 C -0.17 -3.72 4.08 -25.17 -0.10 -3.82 16 19 C 0.06 1.14 7.63 37.93 0.29 1.43 16 20 O -0.38 -8.55 11.65 -35.23 -0.41 -8.96 16 21 C 0.07 1.53 5.70 37.93 0.22 1.75 16 22 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.33 7.26 5.94 -39.29 -0.23 7.03 16 24 H 0.07 1.23 7.10 -51.93 -0.37 0.86 16 25 H 0.06 1.20 7.08 -51.93 -0.37 0.84 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 1.03 7.70 -51.93 -0.40 0.64 16 28 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 29 H 0.07 0.81 8.14 -51.94 -0.42 0.39 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.88 3.91 -51.93 -0.20 1.68 16 33 H 0.07 1.47 6.75 -51.93 -0.35 1.12 16 34 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.97 7.72 -51.93 -0.40 0.57 16 37 H 0.08 1.76 7.76 -51.93 -0.40 1.36 16 LS Contribution 279.89 15.07 4.22 4.22 Total: -1.00 -30.25 279.89 -6.35 -36.60 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -5.83 Total: 8.11 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -0.18 Total: -10.06 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.18 Total: -40.70 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.80 Total: -15.34 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -3.93 Total: 17.17 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.25 -6.35 -36.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260388385.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.296 kcal (2) G-P(sol) polarization free energy of solvation -30.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds