Wall clock time and date at job start Mon Mar 30 2020 03:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99953 * 2 1 4 4 H 1.48500 * 109.47151 * 275.34752 * 3 2 1 5 5 H 1.48494 * 109.47004 * 35.34971 * 3 2 1 6 6 H 1.48504 * 109.47042 * 155.35116 * 3 2 1 7 7 C 1.37881 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00314 * 348.78377 * 7 2 1 9 9 C 1.50704 * 119.99805 * 168.77742 * 7 2 1 10 10 N 1.46905 * 110.45225 * 87.13739 * 9 7 2 11 11 C 1.46898 * 111.00092 * 62.60979 * 10 9 7 12 12 C 1.53001 * 109.47227 * 184.54861 * 11 10 9 13 13 H 1.09000 * 109.87370 * 53.85583 * 12 11 10 14 14 C 1.54101 * 109.88075 * 174.86501 * 12 11 10 15 15 C 1.54811 * 104.18647 * 121.44841 * 14 12 11 16 16 C 1.54998 * 102.09129 * 20.88417 * 15 14 12 17 17 O 1.43747 * 109.87715 * 292.69561 * 12 11 10 18 18 C 1.54502 * 110.51244 * 324.53538 * 9 7 2 19 19 C 1.54481 * 104.06315 * 241.21333 * 18 9 7 20 20 O 1.44423 * 104.80201 * 23.97868 * 19 18 9 21 21 C 1.44430 * 105.27549 * 319.48925 * 20 19 18 22 22 H 0.97001 * 120.00412 * 359.97438 * 1 2 3 23 23 H 1.00902 * 111.00408 * 298.65231 * 10 9 7 24 24 H 1.09001 * 109.47066 * 64.54293 * 11 10 9 25 25 H 1.09001 * 109.46944 * 304.54281 * 11 10 9 26 26 H 1.08998 * 110.48767 * 240.13041 * 14 12 11 27 27 H 1.08998 * 110.48333 * 2.64414 * 14 12 11 28 28 H 1.09007 * 110.90303 * 139.07487 * 15 14 12 29 29 H 1.08989 * 110.91393 * 262.68082 * 15 14 12 30 30 H 1.09000 * 110.61722 * 81.47530 * 16 15 14 31 31 H 1.09000 * 110.61849 * 204.31167 * 16 15 14 32 32 H 1.08997 * 110.51665 * 359.85960 * 18 9 7 33 33 H 1.09001 * 110.51426 * 122.57274 * 18 9 7 34 34 H 1.09003 * 110.37285 * 142.80597 * 19 18 9 35 35 H 1.08999 * 110.37526 * 265.15021 * 19 18 9 36 36 H 1.08999 * 110.36838 * 281.68255 * 21 20 19 37 37 H 1.09000 * 110.37330 * 159.34391 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3836 2.1117 -1.3940 5 1 1.5076 2.6173 0.8100 6 1 3.5986 1.4101 0.5839 7 6 2.0045 -1.1941 0.0005 8 1 1.4800 -2.1204 0.1829 9 6 3.4899 -1.2067 -0.2535 10 7 4.2270 -1.0082 1.0017 11 6 3.9659 -2.1040 1.9445 12 6 4.6574 -1.8064 3.2765 13 1 4.3558 -0.8238 3.6393 14 6 4.2849 -2.8846 4.3126 15 6 5.6454 -3.4903 4.7357 16 6 6.6384 -2.3695 4.3355 17 8 6.0842 -1.8514 3.1071 18 6 3.8723 -0.1203 -1.2834 19 6 4.4838 -0.9155 -2.4582 20 8 3.9173 -2.2390 -2.3424 21 6 3.9156 -2.5297 -0.9277 22 1 -0.4851 0.8400 0.0004 23 1 4.0041 -0.1149 1.4147 24 1 4.3534 -3.0365 1.5342 25 1 2.8918 -2.1964 2.1056 26 1 3.7851 -2.4334 5.1697 27 1 3.6504 -3.6461 3.8594 28 1 5.6739 -3.6696 5.8105 29 1 5.8512 -4.4075 4.1841 30 1 6.6694 -1.5932 5.1000 31 1 7.6337 -2.7806 4.1670 32 1 2.9867 0.4242 -1.6108 33 1 4.6083 0.5640 -0.8614 34 1 4.2019 -0.4641 -3.4095 35 1 5.5689 -0.9577 -2.3639 36 1 4.9136 -2.8193 -0.5987 37 1 3.1974 -3.3183 -0.7032 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260388385.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:49 Heat of formation + Delta-G solvation = -99.967610 kcal Electronic energy + Delta-G solvation = -18546.319603 eV Core-core repulsion = 15709.044761 eV Total energy + Delta-G solvation = -2837.274841 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.74848 -40.08219 -36.71085 -34.48627 -33.02099 -32.39627 -30.49370 -28.86499 -26.90548 -25.45564 -23.69887 -22.68312 -21.72107 -21.25162 -18.76114 -17.41167 -17.28165 -17.13837 -16.78168 -16.23165 -16.17574 -15.79958 -15.17940 -15.03337 -14.44236 -14.14000 -14.01681 -13.80652 -13.10871 -13.02742 -12.79885 -12.51242 -12.46425 -12.29152 -11.97072 -11.87794 -11.62534 -11.52220 -11.40061 -11.07089 -10.80321 -10.54057 -10.48527 -9.04059 -8.37998 -6.43084 1.27290 1.32724 1.42915 2.24028 2.86068 3.06771 3.19526 3.57570 3.73599 3.89099 3.97922 4.05083 4.15909 4.23785 4.29811 4.45524 4.50753 4.57802 4.70079 4.74844 4.85551 4.87692 4.93444 4.96525 4.99549 5.00254 5.05046 5.13199 5.20315 5.27799 5.50845 5.87887 6.06766 6.15104 6.50449 6.56766 6.71033 7.24227 8.77597 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.023522 B = 0.008604 C = 0.007491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.099694 B = 3253.421810 C = 3736.954256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.019 3.981 3 Si 0.950 3.050 4 H -0.275 1.275 5 H -0.307 1.307 6 H -0.223 1.223 7 C -0.534 4.534 8 H 0.029 0.971 9 C 0.178 3.822 10 N -0.672 5.672 11 C 0.070 3.930 12 C 0.081 3.919 13 H 0.057 0.943 14 C -0.151 4.151 15 C -0.145 4.145 16 C 0.034 3.966 17 O -0.384 6.384 18 C -0.172 4.172 19 C 0.056 3.944 20 O -0.398 6.398 21 C 0.076 3.924 22 H 0.266 0.734 23 H 0.327 0.673 24 H 0.065 0.935 25 H 0.032 0.968 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.066 -2.479 7.830 15.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.180 4.180 3 Si 0.777 3.223 4 H -0.202 1.202 5 H -0.236 1.236 6 H -0.147 1.147 7 C -0.574 4.574 8 H 0.047 0.953 9 C 0.088 3.912 10 N -0.304 5.304 11 C -0.060 4.060 12 C 0.023 3.977 13 H 0.075 0.925 14 C -0.189 4.189 15 C -0.183 4.183 16 C -0.042 4.042 17 O -0.304 6.304 18 C -0.210 4.210 19 C -0.021 4.021 20 O -0.317 6.317 21 C -0.002 4.002 22 H 0.075 0.925 23 H 0.146 0.854 24 H 0.084 0.916 25 H 0.050 0.950 26 H 0.105 0.895 27 H 0.093 0.907 28 H 0.120 0.880 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.547 -2.758 7.210 15.592 hybrid contribution -1.614 1.013 0.476 1.964 sum 11.933 -1.745 7.686 14.301 Atomic orbital electron populations 1.70097 1.08460 1.28168 1.50952 1.25976 0.95351 1.03191 0.93486 0.86069 0.80173 0.78212 0.77823 1.20215 1.23594 1.14676 1.21534 0.93053 0.93385 1.49386 0.95303 1.20084 0.90083 0.92580 0.88486 1.61285 1.59107 1.04778 1.05275 1.21945 0.97099 0.95314 0.91641 1.22766 0.81762 0.98467 0.94745 0.92539 1.22978 0.99146 0.98154 0.98632 1.23103 0.93235 0.98807 1.03119 1.23770 0.98465 0.95292 0.86674 1.88981 1.18786 1.86062 1.36571 1.23409 1.00324 0.99567 0.97660 1.23398 0.97845 0.82223 0.98589 1.88987 1.84302 1.33875 1.24559 1.23267 0.99429 0.97140 0.80325 0.92527 0.85386 0.91632 0.94959 0.89484 0.90660 0.88031 0.90506 0.91590 0.87872 0.92398 0.89344 0.88435 0.90258 0.91632 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.88 13.96 21.45 0.30 -57.58 16 2 C 0.02 1.08 5.21 84.66 0.44 1.52 16 3 Si 0.95 43.54 23.13 68.60 1.59 45.13 16 4 H -0.28 -12.27 6.71 99.48 0.67 -11.61 16 5 H -0.31 -14.30 7.11 99.48 0.71 -13.59 16 6 H -0.22 -9.10 4.48 99.48 0.45 -8.65 16 7 C -0.53 -29.73 7.54 25.60 0.19 -29.54 16 8 H 0.03 1.81 7.90 -2.91 -0.02 1.79 16 9 C 0.18 8.12 0.54 3.79 0.00 8.12 16 10 N -0.67 -27.90 6.00 -468.85 -2.81 -30.71 16 11 C 0.07 2.64 4.62 86.30 0.40 3.04 16 12 C 0.08 2.52 3.56 30.97 0.11 2.63 16 13 H 0.06 1.80 8.12 -2.39 -0.02 1.78 16 14 C -0.15 -3.61 6.64 31.58 0.21 -3.40 16 15 C -0.15 -2.73 7.15 31.90 0.23 -2.50 16 16 C 0.03 0.73 7.72 72.67 0.56 1.29 16 17 O -0.38 -12.08 11.17 -148.98 -1.66 -13.74 16 18 C -0.17 -7.25 4.08 31.61 0.13 -7.12 16 19 C 0.06 2.07 7.63 72.49 0.55 2.62 16 20 O -0.40 -17.42 11.65 -148.98 -1.74 -19.16 16 21 C 0.08 3.27 5.70 72.48 0.41 3.68 16 22 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 23 H 0.33 13.84 5.94 -89.69 -0.53 13.31 16 24 H 0.07 2.46 7.10 -2.39 -0.02 2.44 16 25 H 0.03 1.39 7.08 -2.39 -0.02 1.37 16 26 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.07 1.87 7.70 -2.39 -0.02 1.85 16 28 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 2.69 3.91 -2.39 -0.01 2.68 16 33 H 0.09 3.38 6.75 -2.39 -0.02 3.37 16 34 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 35 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.07 2.59 7.72 -2.39 -0.02 2.57 16 37 H 0.07 3.00 7.76 -2.39 -0.02 2.98 16 Total: -1.00 -66.65 279.89 -0.86 -67.52 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.22 Total: 28.19 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: 3.24 Total: -19.65 kcal Atomic # 7 Polarization: -85.77 SS G_CDS: -2.51 Total: -88.29 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -3.40 Total: -32.90 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.59 Total: 45.13 kcal Total: -66.65 -0.86 -67.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260388385.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.451 kcal (2) G-P(sol) polarization free energy of solvation -66.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds