Wall clock time and date at job start Mon Mar 30 2020 03:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86802 * 119.99924 * 2 1 4 4 H 1.48504 * 109.47003 * 95.30400 * 3 2 1 5 5 H 1.48503 * 109.46835 * 215.29823 * 3 2 1 6 6 H 1.48492 * 109.47380 * 335.29975 * 3 2 1 7 7 C 1.37878 * 119.99694 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00165 * 359.86687 * 7 2 1 9 9 C 1.50701 * 119.99784 * 179.87137 * 7 2 1 10 10 N 1.46902 * 110.45581 * 56.57668 * 9 7 2 11 11 C 1.46893 * 111.00000 * 59.85929 * 10 9 7 12 12 C 1.53005 * 109.47055 * 174.36372 * 11 10 9 13 13 H 1.08999 * 110.32507 * 305.69385 * 12 11 10 14 14 C 1.54481 * 110.37395 * 183.45096 * 12 11 10 15 15 C 1.54510 * 104.06245 * 217.18524 * 14 12 11 16 16 C 1.54481 * 104.05978 * 0.02562 * 15 14 12 17 17 O 1.44424 * 110.37551 * 67.94431 * 12 11 10 18 18 C 1.54509 * 110.50918 * 293.96992 * 9 7 2 19 19 C 1.54479 * 104.06342 * 241.35582 * 18 9 7 20 20 O 1.44423 * 104.80048 * 23.97918 * 19 18 9 21 21 C 1.44784 * 105.29983 * 319.45147 * 20 19 18 22 22 H 0.96997 * 119.99510 * 0.02562 * 1 2 3 23 23 H 1.00897 * 110.99794 * 295.90145 * 10 9 7 24 24 H 1.09003 * 109.46813 * 294.35399 * 11 10 9 25 25 H 1.08995 * 109.47486 * 54.35901 * 11 10 9 26 26 H 1.09006 * 110.50809 * 335.82706 * 14 12 11 27 27 H 1.08995 * 110.51105 * 98.53568 * 14 12 11 28 28 H 1.08997 * 110.50830 * 118.63879 * 15 14 12 29 29 H 1.08992 * 110.51377 * 241.35237 * 15 14 12 30 30 H 1.08995 * 110.37399 * 142.81351 * 16 15 14 31 31 H 1.09004 * 110.36656 * 265.14612 * 16 15 14 32 32 H 1.09000 * 110.51024 * 0.02562 * 18 9 7 33 33 H 1.09004 * 110.50603 * 122.57611 * 18 9 7 34 34 H 1.08997 * 110.37087 * 142.81201 * 19 18 9 35 35 H 1.09000 * 110.37062 * 265.15124 * 19 18 9 36 36 H 1.09000 * 110.42556 * 281.78245 * 21 20 19 37 37 H 1.09001 * 110.48734 * 159.32248 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6088 1.9817 1.3941 5 1 3.4863 1.4750 -0.8090 6 1 1.3953 2.6824 -0.5850 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0031 9 6 3.5116 -1.1941 -0.0024 10 7 4.0272 -0.4342 1.1442 11 6 3.5685 -1.0178 2.4117 12 6 4.2359 -0.2889 3.5798 13 1 5.3195 -0.2982 3.4624 14 6 3.8348 -0.9422 4.9211 15 6 3.6964 0.2508 5.8931 16 6 4.0297 1.4837 5.0240 17 8 3.7513 1.0687 3.6683 18 6 4.0504 -0.6083 -1.3267 19 6 4.8534 -1.7704 -1.9520 20 8 4.2858 -2.9651 -1.3722 21 6 4.0529 -2.6408 0.0195 22 1 -0.4849 0.8401 -0.0004 23 1 3.7680 0.5387 1.0792 24 1 2.4862 -0.9134 2.4891 25 1 3.8348 -2.0742 2.4428 26 1 2.8840 -1.4659 4.8215 27 1 4.6137 -1.6242 5.2617 28 1 2.6773 0.3168 6.2741 29 1 4.4070 0.1587 6.7144 30 1 3.3962 2.3261 5.3016 31 1 5.0819 1.7484 5.1287 32 1 3.2267 -0.3183 -1.9791 33 1 4.6994 0.2452 -1.1306 34 1 4.7291 -1.7780 -3.0348 35 1 5.9084 -1.6862 -1.6909 36 1 4.9850 -2.6887 0.5824 37 1 3.3134 -3.3161 0.4500 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260388389.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:51 Heat of formation + Delta-G solvation = -76.579393 kcal Electronic energy + Delta-G solvation = -18702.235048 eV Core-core repulsion = 15865.974396 eV Total energy + Delta-G solvation = -2836.260652 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.26470 -38.59026 -35.12808 -32.29337 -31.85082 -30.77193 -28.93075 -27.32050 -24.92475 -24.16440 -22.05039 -21.29277 -20.41872 -19.38204 -16.76532 -16.28516 -15.78820 -15.33166 -15.17321 -14.97918 -14.69787 -14.08060 -13.68538 -13.38118 -13.00391 -12.37080 -12.31131 -11.85785 -11.69419 -11.56162 -11.29982 -11.19944 -10.98118 -10.61919 -10.52084 -10.34019 -10.19104 -9.76560 -9.71859 -9.40595 -9.21889 -8.84767 -8.59655 -7.36089 -6.16724 -4.19297 3.29666 3.33640 3.40899 4.19628 4.34730 4.70163 4.79821 4.91062 5.06258 5.12725 5.23119 5.44983 5.62148 5.74261 5.75281 5.81949 5.85437 5.88980 5.89923 5.95855 6.07998 6.15019 6.23518 6.31422 6.43923 6.55071 6.69957 6.79999 6.81579 7.04461 7.23012 7.55090 7.56360 7.93917 8.28010 8.52106 8.86709 9.44373 10.95458 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.022072 B = 0.009953 C = 0.008156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.242841 B = 2812.449780 C = 3432.407570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.080 3.920 3 Si 0.839 3.161 4 H -0.256 1.256 5 H -0.241 1.241 6 H -0.297 1.297 7 C -0.533 4.533 8 H 0.077 0.923 9 C 0.174 3.826 10 N -0.683 5.683 11 C 0.071 3.929 12 C 0.074 3.926 13 H 0.069 0.931 14 C -0.150 4.150 15 C -0.154 4.154 16 C 0.042 3.958 17 O -0.365 6.365 18 C -0.147 4.147 19 C 0.052 3.948 20 O -0.382 6.382 21 C 0.069 3.931 22 H 0.265 0.735 23 H 0.327 0.673 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.046 0.954 36 H 0.047 0.953 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.647 0.689 8.093 12.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.124 4.124 3 Si 0.668 3.332 4 H -0.181 1.181 5 H -0.166 1.166 6 H -0.224 1.224 7 C -0.572 4.572 8 H 0.095 0.905 9 C 0.085 3.915 10 N -0.320 5.320 11 C -0.059 4.059 12 C 0.016 3.984 13 H 0.087 0.913 14 C -0.188 4.188 15 C -0.192 4.192 16 C -0.035 4.035 17 O -0.284 6.284 18 C -0.186 4.186 19 C -0.025 4.025 20 O -0.300 6.300 21 C -0.008 4.008 22 H 0.075 0.925 23 H 0.150 0.850 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.934 0.392 7.802 12.637 hybrid contribution -0.562 1.426 0.345 1.571 sum 9.371 1.818 8.147 12.550 Atomic orbital electron populations 1.69899 1.06271 1.27092 1.49407 1.24957 0.94707 0.98905 0.93820 0.87724 0.81056 0.84078 0.80382 1.18141 1.16565 1.22437 1.21388 0.88863 0.94795 1.52152 0.90537 1.20215 0.94208 0.90235 0.86852 1.61296 1.62405 1.06296 1.02049 1.21791 0.99247 0.97099 0.87749 1.23223 0.98218 0.82125 0.94848 0.91281 1.22960 1.02821 0.98066 0.94957 1.22915 1.02376 0.95316 0.98556 1.23354 0.99928 0.97214 0.83033 1.89293 1.82178 1.28807 1.28093 1.23430 0.99411 0.97316 0.98445 1.23264 0.95929 0.85506 0.97813 1.89062 1.83265 1.34354 1.23347 1.23407 0.98285 0.96694 0.82374 0.92543 0.84999 0.92452 0.90595 0.90299 0.90769 0.90879 0.91001 0.89703 0.92808 0.90688 0.91703 0.90512 0.93582 0.93469 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.06 13.96 55.43 0.77 -26.29 16 2 C 0.08 2.27 5.38 -17.81 -0.10 2.17 16 3 Si 0.84 20.90 23.55 -169.99 -4.00 16.89 16 4 H -0.26 -6.42 6.77 56.52 0.38 -6.04 16 5 H -0.24 -5.57 4.39 56.52 0.25 -5.33 16 6 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 7 C -0.53 -14.66 7.27 -34.44 -0.25 -14.91 16 8 H 0.08 2.33 7.82 -52.49 -0.41 1.91 16 9 C 0.17 4.04 0.54 -131.18 -0.07 3.97 16 10 N -0.68 -15.00 5.83 -99.54 -0.58 -15.58 16 11 C 0.07 1.42 4.76 -3.83 -0.02 1.40 16 12 C 0.07 1.25 3.52 -25.95 -0.09 1.16 16 13 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 14 C -0.15 -2.01 6.63 -25.16 -0.17 -2.18 16 15 C -0.15 -1.84 7.09 -25.16 -0.18 -2.02 16 16 C 0.04 0.58 7.63 37.93 0.29 0.87 16 17 O -0.36 -6.95 11.06 -35.23 -0.39 -7.34 16 18 C -0.15 -3.22 4.36 -25.16 -0.11 -3.33 16 19 C 0.05 1.00 7.63 37.93 0.29 1.29 16 20 O -0.38 -8.29 11.66 -35.23 -0.41 -8.70 16 21 C 0.07 1.47 5.59 37.93 0.21 1.68 16 22 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 23 H 0.33 7.64 3.45 -39.29 -0.14 7.50 16 24 H 0.06 1.34 7.35 -51.93 -0.38 0.96 16 25 H 0.08 1.38 6.96 -51.93 -0.36 1.02 16 26 H 0.08 1.11 7.87 -51.93 -0.41 0.70 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.75 6.92 -51.93 -0.36 1.39 16 33 H 0.06 1.36 6.64 -51.93 -0.34 1.02 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.91 7.93 -51.93 -0.41 0.50 16 37 H 0.08 1.76 7.71 -51.93 -0.40 1.36 16 LS Contribution 280.83 15.07 4.23 4.23 Total: -1.00 -31.15 280.83 -6.47 -37.63 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -5.90 Total: 9.05 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -0.19 Total: -9.89 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.19 Total: -41.87 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.80 Total: -16.04 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.00 Total: 16.89 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.15 -6.47 -37.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260388389.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.953 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds