Wall clock time and date at job start Mon Mar 30 2020 03:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86802 * 119.99924 * 2 1 4 4 H 1.48504 * 109.47003 * 95.30400 * 3 2 1 5 5 H 1.48503 * 109.46835 * 215.29823 * 3 2 1 6 6 H 1.48492 * 109.47380 * 335.29975 * 3 2 1 7 7 C 1.37878 * 119.99694 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00165 * 359.86687 * 7 2 1 9 9 C 1.50701 * 119.99784 * 179.87137 * 7 2 1 10 10 N 1.46902 * 110.45581 * 56.57668 * 9 7 2 11 11 C 1.46893 * 111.00000 * 59.85929 * 10 9 7 12 12 C 1.53005 * 109.47055 * 174.36372 * 11 10 9 13 13 H 1.08999 * 110.32507 * 305.69385 * 12 11 10 14 14 C 1.54481 * 110.37395 * 183.45096 * 12 11 10 15 15 C 1.54510 * 104.06245 * 217.18524 * 14 12 11 16 16 C 1.54481 * 104.05978 * 0.02562 * 15 14 12 17 17 O 1.44424 * 110.37551 * 67.94431 * 12 11 10 18 18 C 1.54509 * 110.50918 * 293.96992 * 9 7 2 19 19 C 1.54479 * 104.06342 * 241.35582 * 18 9 7 20 20 O 1.44423 * 104.80048 * 23.97918 * 19 18 9 21 21 C 1.44784 * 105.29983 * 319.45147 * 20 19 18 22 22 H 0.96997 * 119.99510 * 0.02562 * 1 2 3 23 23 H 1.00897 * 110.99794 * 295.90145 * 10 9 7 24 24 H 1.09003 * 109.46813 * 294.35399 * 11 10 9 25 25 H 1.08995 * 109.47486 * 54.35901 * 11 10 9 26 26 H 1.09006 * 110.50809 * 335.82706 * 14 12 11 27 27 H 1.08995 * 110.51105 * 98.53568 * 14 12 11 28 28 H 1.08997 * 110.50830 * 118.63879 * 15 14 12 29 29 H 1.08992 * 110.51377 * 241.35237 * 15 14 12 30 30 H 1.08995 * 110.37399 * 142.81351 * 16 15 14 31 31 H 1.09004 * 110.36656 * 265.14612 * 16 15 14 32 32 H 1.09000 * 110.51024 * 0.02562 * 18 9 7 33 33 H 1.09004 * 110.50603 * 122.57611 * 18 9 7 34 34 H 1.08997 * 110.37087 * 142.81201 * 19 18 9 35 35 H 1.09000 * 110.37062 * 265.15124 * 19 18 9 36 36 H 1.09000 * 110.42556 * 281.78245 * 21 20 19 37 37 H 1.09001 * 110.48734 * 159.32248 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6088 1.9817 1.3941 5 1 3.4863 1.4750 -0.8090 6 1 1.3953 2.6824 -0.5850 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0031 9 6 3.5116 -1.1941 -0.0024 10 7 4.0272 -0.4342 1.1442 11 6 3.5685 -1.0178 2.4117 12 6 4.2359 -0.2889 3.5798 13 1 5.3195 -0.2982 3.4624 14 6 3.8348 -0.9422 4.9211 15 6 3.6964 0.2508 5.8931 16 6 4.0297 1.4837 5.0240 17 8 3.7513 1.0687 3.6683 18 6 4.0504 -0.6083 -1.3267 19 6 4.8534 -1.7704 -1.9520 20 8 4.2858 -2.9651 -1.3722 21 6 4.0529 -2.6408 0.0195 22 1 -0.4849 0.8401 -0.0004 23 1 3.7680 0.5387 1.0792 24 1 2.4862 -0.9134 2.4891 25 1 3.8348 -2.0742 2.4428 26 1 2.8840 -1.4659 4.8215 27 1 4.6137 -1.6242 5.2617 28 1 2.6773 0.3168 6.2741 29 1 4.4070 0.1587 6.7144 30 1 3.3962 2.3261 5.3016 31 1 5.0819 1.7484 5.1287 32 1 3.2267 -0.3183 -1.9791 33 1 4.6994 0.2452 -1.1306 34 1 4.7291 -1.7780 -3.0348 35 1 5.9084 -1.6862 -1.6909 36 1 4.9850 -2.6887 0.5824 37 1 3.3134 -3.3161 0.4500 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260388389.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:51 Heat of formation + Delta-G solvation = -101.395235 kcal Electronic energy + Delta-G solvation = -18703.311144 eV Core-core repulsion = 15865.974396 eV Total energy + Delta-G solvation = -2837.336748 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.73425 -40.06780 -36.85257 -34.34587 -33.06511 -32.38672 -30.42901 -28.92577 -26.95005 -25.62501 -23.55281 -22.49473 -21.75374 -21.25245 -18.77529 -17.66899 -17.21822 -17.07662 -16.69342 -16.39692 -16.23968 -15.75457 -15.30120 -15.01406 -14.56145 -14.12264 -13.79524 -13.65610 -13.07243 -13.01978 -12.87984 -12.71224 -12.50553 -12.31567 -12.05611 -11.83072 -11.58197 -11.45841 -11.37203 -11.17917 -10.76700 -10.66808 -10.50546 -9.22925 -8.39931 -6.45107 1.27282 1.33120 1.35475 2.23042 2.90858 3.04053 3.16600 3.47149 3.73567 3.94763 4.02117 4.08131 4.24470 4.30993 4.33268 4.37605 4.52058 4.53669 4.67329 4.78673 4.79888 4.86620 4.91639 4.95431 4.98467 5.07687 5.10054 5.17485 5.25740 5.30026 5.52728 5.83794 6.00464 6.03053 6.39850 6.51632 6.60489 7.21732 8.75947 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.022072 B = 0.009953 C = 0.008156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.242841 B = 2812.449780 C = 3432.407570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.027 3.973 3 Si 0.899 3.101 4 H -0.259 1.259 5 H -0.208 1.208 6 H -0.306 1.306 7 C -0.527 4.527 8 H 0.030 0.970 9 C 0.168 3.832 10 N -0.670 5.670 11 C 0.071 3.929 12 C 0.074 3.926 13 H 0.086 0.914 14 C -0.147 4.147 15 C -0.147 4.147 16 C 0.033 3.967 17 O -0.409 6.409 18 C -0.151 4.151 19 C 0.054 3.946 20 O -0.399 6.399 21 C 0.076 3.924 22 H 0.264 0.736 23 H 0.318 0.682 24 H 0.012 0.988 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.104 0.896 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.886 1.102 8.983 15.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.172 4.172 3 Si 0.725 3.275 4 H -0.185 1.185 5 H -0.131 1.131 6 H -0.234 1.234 7 C -0.566 4.566 8 H 0.049 0.951 9 C 0.077 3.923 10 N -0.306 5.306 11 C -0.059 4.059 12 C 0.017 3.983 13 H 0.104 0.896 14 C -0.185 4.185 15 C -0.184 4.184 16 C -0.044 4.044 17 O -0.329 6.329 18 C -0.190 4.190 19 C -0.022 4.022 20 O -0.318 6.318 21 C -0.001 4.001 22 H 0.072 0.928 23 H 0.141 0.859 24 H 0.030 0.970 25 H 0.109 0.891 26 H 0.082 0.918 27 H 0.123 0.877 28 H 0.089 0.911 29 H 0.123 0.877 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.204 0.786 8.695 15.830 hybrid contribution -1.619 1.216 0.091 2.027 sum 11.585 2.002 8.786 14.677 Atomic orbital electron populations 1.70049 1.08169 1.27810 1.51972 1.25706 0.95272 1.02485 0.93718 0.86783 0.80854 0.79390 0.80466 1.18464 1.13129 1.23425 1.21620 0.91604 0.92791 1.50624 0.95137 1.20237 0.91269 0.92353 0.88393 1.61367 1.61360 1.05588 1.02278 1.21869 0.96848 0.98677 0.88483 1.23243 0.98479 0.81705 0.94914 0.89643 1.22969 1.03051 0.98919 0.93579 1.22916 1.03336 0.93464 0.98715 1.23641 1.01418 0.98179 0.81138 1.89237 1.82874 1.29699 1.31127 1.23373 0.99377 0.99072 0.97142 1.23449 0.96886 0.83040 0.98847 1.89047 1.83751 1.35580 1.23440 1.23324 0.99155 0.94815 0.82851 0.92753 0.85945 0.96979 0.89070 0.91784 0.87740 0.91072 0.87681 0.89182 0.90694 0.92853 0.90204 0.88338 0.90361 0.90597 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.91 13.96 21.45 0.30 -59.61 16 2 C 0.03 1.58 5.38 84.65 0.46 2.04 16 3 Si 0.90 44.07 23.55 68.60 1.62 45.69 16 4 H -0.26 -12.78 6.77 99.48 0.67 -12.10 16 5 H -0.21 -9.02 4.39 99.48 0.44 -8.58 16 6 H -0.31 -15.36 7.11 99.48 0.71 -14.65 16 7 C -0.53 -29.99 7.27 25.60 0.19 -29.80 16 8 H 0.03 1.96 7.82 -2.91 -0.02 1.94 16 9 C 0.17 7.65 0.54 3.80 0.00 7.65 16 10 N -0.67 -28.45 5.83 -468.84 -2.74 -31.19 16 11 C 0.07 2.80 4.76 86.31 0.41 3.21 16 12 C 0.07 2.37 3.52 31.10 0.11 2.48 16 13 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 14 C -0.15 -3.60 6.63 31.61 0.21 -3.39 16 15 C -0.15 -3.07 7.09 31.61 0.22 -2.84 16 16 C 0.03 0.82 7.63 72.49 0.55 1.37 16 17 O -0.41 -15.05 11.06 -148.98 -1.65 -16.70 16 18 C -0.15 -6.26 4.36 31.61 0.14 -6.13 16 19 C 0.05 1.89 7.63 72.48 0.55 2.44 16 20 O -0.40 -16.53 11.66 -148.98 -1.74 -18.26 16 21 C 0.08 3.10 5.59 72.49 0.40 3.50 16 22 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 23 H 0.32 14.42 3.45 -89.70 -0.31 14.12 16 24 H 0.01 0.58 7.35 -2.39 -0.02 0.56 16 25 H 0.09 3.24 6.96 -2.39 -0.02 3.22 16 26 H 0.06 1.74 7.87 -2.38 -0.02 1.73 16 27 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.10 1.52 8.14 -2.39 -0.02 1.51 16 30 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.05 2.42 6.92 -2.39 -0.02 2.41 16 33 H 0.08 3.06 6.64 -2.38 -0.02 3.04 16 34 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 35 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.08 2.69 7.93 -2.39 -0.02 2.67 16 37 H 0.07 3.01 7.71 -2.39 -0.02 2.99 16 Total: -1.00 -70.28 280.83 -0.52 -70.81 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.44 Total: 28.74 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: 3.25 Total: -19.46 kcal Atomic # 7 Polarization: -88.36 SS G_CDS: -2.44 Total: -90.80 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -3.39 Total: -34.97 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.62 Total: 45.69 kcal Total: -70.28 -0.52 -70.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260388389.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.588 kcal (2) G-P(sol) polarization free energy of solvation -70.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds