Wall clock time and date at job start Mon Mar 30 2020 03:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99840 * 2 1 4 4 H 1.48500 * 109.47079 * 239.99452 * 3 2 1 5 5 H 1.48489 * 109.47476 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46873 * 120.00327 * 3 2 1 7 7 C 1.37878 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99679 * 184.43382 * 7 2 1 9 9 C 1.50702 * 119.99841 * 4.42767 * 7 2 1 10 10 N 1.46894 * 110.54324 * 294.14179 * 9 7 2 11 11 C 1.46904 * 111.00300 * 302.02504 * 10 9 7 12 12 C 1.52996 * 109.47466 * 180.16764 * 11 10 9 13 13 H 1.09003 * 109.82096 * 305.57020 * 12 11 10 14 14 C 1.54377 * 109.83212 * 184.58565 * 12 11 10 15 15 C 1.55308 * 102.25404 * 219.12890 * 14 12 11 16 16 C 1.54947 * 100.94001 * 34.13520 * 15 14 12 17 17 O 1.43249 * 109.82770 * 66.45020 * 12 11 10 18 18 C 1.54809 * 110.48655 * 56.76084 * 9 7 2 19 19 C 1.55000 * 102.09186 * 139.55403 * 18 9 7 20 20 O 1.44382 * 103.48872 * 322.97623 * 19 18 9 21 21 C 1.43740 * 106.97382 * 40.05914 * 20 19 18 22 22 H 0.97004 * 119.99402 * 0.02562 * 1 2 3 23 23 H 1.00902 * 111.00281 * 65.97795 * 10 9 7 24 24 H 1.09000 * 109.46921 * 300.16899 * 11 10 9 25 25 H 1.08997 * 109.47044 * 60.16458 * 11 10 9 26 26 H 1.09001 * 110.85012 * 337.32338 * 14 12 11 27 27 H 1.09001 * 110.84807 * 100.94263 * 14 12 11 28 28 H 1.08994 * 111.12476 * 276.21789 * 15 14 12 29 29 H 1.08998 * 111.15814 * 152.06414 * 15 14 12 30 30 H 1.09003 * 110.31426 * 204.63891 * 16 15 14 31 31 H 1.09003 * 110.31025 * 82.46611 * 16 15 14 32 32 H 1.09003 * 110.90703 * 21.35727 * 18 9 7 33 33 H 1.08997 * 110.90767 * 257.75107 * 18 9 7 34 34 H 1.08994 * 110.61637 * 81.47623 * 19 18 9 35 35 H 1.08997 * 110.61994 * 204.31783 * 19 18 9 36 36 H 1.09001 * 109.87668 * 92.91692 * 21 20 19 37 37 H 1.09003 * 109.87556 * 213.91006 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0821 -1.1955 0.0718 9 6 1.2543 -2.4972 -0.1019 10 7 0.4273 -2.7101 1.0933 11 6 1.2497 -2.7044 2.3105 12 6 0.3560 -2.9327 3.5311 13 1 -0.4496 -2.1984 3.5419 14 6 1.1930 -2.8139 4.8228 15 6 0.6001 -3.9461 5.7052 16 6 0.2558 -5.0072 4.6299 17 8 -0.1927 -4.2554 3.4910 18 6 0.3783 -2.5202 -1.3781 19 6 0.5726 -3.9741 -1.8791 20 8 1.9580 -4.2507 -1.5810 21 6 2.2346 -3.6702 -0.2955 22 1 -0.4849 0.8401 -0.0004 23 1 -0.3087 -2.0223 1.1511 24 1 1.9930 -3.4995 2.2506 25 1 1.7536 -1.7424 2.4040 26 1 2.2486 -2.9934 4.6189 27 1 1.0474 -1.8405 5.2912 28 1 -0.2962 -3.6095 6.2261 29 1 1.3412 -4.3257 6.4085 30 1 -0.5382 -5.6634 4.9864 31 1 1.1419 -5.5883 4.3744 32 1 0.7435 -1.8033 -2.1135 33 1 -0.6670 -2.3287 -1.1359 34 1 -0.0806 -4.6574 -1.3366 35 1 0.3879 -4.0385 -2.9514 36 1 2.0826 -4.4134 0.4872 37 1 3.2618 -3.3065 -0.2664 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260388395.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:53 Heat of formation + Delta-G solvation = -113.907836 kcal Electronic energy + Delta-G solvation = -18549.968357 eV Core-core repulsion = 15712.089022 eV Total energy + Delta-G solvation = -2837.879335 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.55907 -39.96764 -36.56470 -34.08307 -32.94935 -31.95122 -30.30992 -28.87150 -26.73270 -25.40104 -23.24278 -22.47001 -21.58607 -21.02561 -18.64886 -17.67350 -17.03883 -16.87222 -16.59945 -16.35056 -15.81651 -15.49370 -14.80784 -14.70901 -14.45747 -13.94925 -13.76138 -13.43308 -13.08756 -12.80802 -12.66495 -12.54606 -12.44825 -12.34751 -12.02042 -11.96199 -11.67254 -11.49138 -11.36713 -11.14234 -10.63787 -10.34885 -10.27586 -8.88014 -8.05925 -6.28707 1.37203 1.40407 1.46223 2.38093 3.01459 3.13370 3.26795 3.68369 3.76096 4.02263 4.15404 4.23281 4.30557 4.42806 4.49865 4.53345 4.59704 4.70051 4.84182 4.85249 4.88821 4.94185 4.97253 5.02803 5.14459 5.18867 5.30149 5.33753 5.43149 5.59641 5.66228 6.04490 6.19793 6.30376 6.69803 6.87130 7.08352 7.42891 8.87376 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.019082 B = 0.009420 C = 0.007057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.982298 B = 2971.619091 C = 3966.725947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.037 3.963 3 Si 0.944 3.056 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.552 4.552 8 H 0.043 0.957 9 C 0.200 3.800 10 N -0.671 5.671 11 C 0.069 3.931 12 C 0.086 3.914 13 H 0.059 0.941 14 C -0.147 4.147 15 C -0.143 4.143 16 C 0.037 3.963 17 O -0.392 6.392 18 C -0.104 4.104 19 C 0.049 3.951 20 O -0.405 6.405 21 C 0.067 3.933 22 H 0.265 0.735 23 H 0.341 0.659 24 H 0.051 0.949 25 H 0.025 0.975 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.042 0.958 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.047 0.953 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.260 -5.364 8.949 10.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.164 4.164 3 Si 0.771 3.229 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.592 4.592 8 H 0.062 0.938 9 C 0.109 3.891 10 N -0.302 5.302 11 C -0.062 4.062 12 C 0.029 3.971 13 H 0.077 0.923 14 C -0.185 4.185 15 C -0.180 4.180 16 C -0.039 4.039 17 O -0.312 6.312 18 C -0.142 4.142 19 C -0.027 4.027 20 O -0.324 6.324 21 C -0.010 4.010 22 H 0.074 0.926 23 H 0.160 0.840 24 H 0.069 0.931 25 H 0.043 0.957 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.117 0.883 36 H 0.065 0.935 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.114 -6.134 8.588 10.554 hybrid contribution 0.646 2.313 0.083 2.403 sum 0.760 -3.821 8.671 9.506 Atomic orbital electron populations 1.69894 1.06440 1.27557 1.49835 1.25495 0.95598 1.01347 0.94008 0.85836 0.78633 0.80001 0.78475 1.20451 1.20857 1.19987 1.21767 0.92999 0.92291 1.52152 0.93837 1.19740 0.89724 0.90870 0.88719 1.61050 1.13601 1.54144 1.01417 1.22003 0.95237 0.98504 0.90424 1.22742 0.95004 0.84615 0.94789 0.92293 1.23135 1.00213 1.01002 0.94139 1.23230 1.02307 0.94719 0.97781 1.23590 0.99988 0.94886 0.85470 1.88522 1.71681 1.24554 1.46436 1.22685 0.99973 0.94333 0.97250 1.23634 0.82456 0.95853 1.00752 1.88663 1.28576 1.78091 1.37116 1.23234 0.98946 0.94520 0.84332 0.92594 0.84019 0.93052 0.95661 0.90294 0.89281 0.89774 0.87735 0.88683 0.92488 0.93896 0.92130 0.92434 0.88337 0.93482 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.47 10.92 21.45 0.23 -47.23 16 2 C 0.04 1.94 5.22 84.65 0.44 2.38 16 3 Si 0.94 42.06 29.54 68.60 2.03 44.09 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.55 -29.10 6.57 25.60 0.17 -28.93 16 8 H 0.04 2.33 7.39 -2.91 -0.02 2.31 16 9 C 0.20 9.74 0.49 3.77 0.00 9.74 16 10 N -0.67 -31.46 6.00 -468.99 -2.82 -34.28 16 11 C 0.07 2.87 4.63 86.30 0.40 3.27 16 12 C 0.09 3.04 3.71 31.06 0.12 3.15 16 13 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 14 C -0.15 -3.82 6.54 31.85 0.21 -3.61 16 15 C -0.14 -2.92 7.16 32.05 0.23 -2.69 16 16 C 0.04 0.93 7.78 72.65 0.56 1.50 16 17 O -0.39 -14.08 10.99 -148.98 -1.64 -15.72 16 18 C -0.10 -4.93 5.21 31.90 0.17 -4.76 16 19 C 0.05 2.02 7.72 72.67 0.56 2.58 16 20 O -0.41 -18.38 11.52 -148.98 -1.72 -20.10 16 21 C 0.07 3.07 6.51 72.35 0.47 3.54 16 22 H 0.26 13.51 8.31 -92.70 -0.77 12.74 16 23 H 0.34 17.29 7.15 -89.69 -0.64 16.65 16 24 H 0.05 2.13 6.67 -2.39 -0.02 2.12 16 25 H 0.03 1.16 7.10 -2.39 -0.02 1.14 16 26 H 0.08 2.01 7.85 -2.39 -0.02 2.00 16 27 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.04 2.17 7.83 -2.39 -0.02 2.16 16 33 H 0.06 2.97 7.89 -2.39 -0.02 2.95 16 34 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 36 H 0.05 2.12 6.80 -2.39 -0.02 2.10 16 37 H 0.06 2.96 7.43 -2.39 -0.02 2.95 16 Total: -1.00 -58.04 291.39 -0.17 -58.21 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.41 Total: 28.84 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 3.33 Total: -13.81 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -2.58 Total: -81.51 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -3.35 Total: -35.81 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -58.04 -0.17 -58.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260388395.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.699 kcal (2) G-P(sol) polarization free energy of solvation -58.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds