Wall clock time and date at job start Mon Mar 30 2020 03:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99930 * 2 1 4 4 H 1.48505 * 109.46854 * 265.24976 * 3 2 1 5 5 H 1.48502 * 109.47221 * 25.24414 * 3 2 1 6 6 H 1.48499 * 109.47317 * 145.24892 * 3 2 1 7 7 C 1.37873 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00403 * 7.99043 * 7 2 1 9 9 C 1.50704 * 120.00110 * 187.98929 * 7 2 1 10 10 N 1.46908 * 109.54076 * 55.40338 * 9 7 2 11 11 C 1.47011 * 110.99817 * 183.45662 * 10 9 7 12 12 C 1.53099 * 109.25741 * 177.61030 * 11 10 9 13 13 O 1.43015 * 109.25904 * 56.84867 * 12 11 10 14 14 C 1.43011 * 113.73926 * 301.33297 * 13 12 11 15 15 C 1.47019 * 110.99510 * 59.82375 * 10 9 7 16 16 C 1.53169 * 109.61826 * 175.62586 * 9 7 2 17 17 C 1.53094 * 109.16225 * 62.93216 * 16 9 7 18 18 O 1.42905 * 109.41216 * 57.60905 * 17 16 9 19 19 C 1.42895 * 114.09609 * 298.84078 * 18 17 16 20 20 C 1.53086 * 109.41716 * 61.16113 * 19 18 17 21 21 H 0.97006 * 120.00512 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.50928 * 297.54526 * 11 10 9 23 23 H 1.09004 * 109.50576 * 57.67667 * 11 10 9 24 24 H 1.09004 * 109.50770 * 296.91369 * 12 11 10 25 25 H 1.09000 * 109.54542 * 176.80568 * 12 11 10 26 26 H 1.08998 * 109.50791 * 298.73311 * 14 13 12 27 27 H 1.08997 * 109.54239 * 178.62645 * 14 13 12 28 28 H 1.08996 * 109.50834 * 302.32518 * 15 10 9 29 29 H 1.09000 * 109.50296 * 62.41714 * 15 10 9 30 30 H 1.09004 * 109.52615 * 182.83783 * 16 9 7 31 31 H 1.08998 * 109.52480 * 303.02525 * 16 9 7 32 32 H 1.08997 * 109.47962 * 297.62544 * 17 16 9 33 33 H 1.08997 * 109.47953 * 177.59079 * 17 16 9 34 34 H 1.09005 * 109.48450 * 301.17375 * 19 18 17 35 35 H 1.09003 * 109.49199 * 181.15094 * 19 18 17 36 36 H 1.09001 * 109.52358 * 182.48373 * 20 19 18 37 37 H 1.09000 * 109.52164 * 62.29664 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5969 1.9884 -1.3953 5 1 1.3999 2.6796 0.5971 6 1 3.4928 1.4713 0.7980 7 6 2.0045 -1.1940 0.0005 8 1 1.4724 -2.1249 -0.1291 9 6 3.5005 -1.2003 0.1819 10 7 3.8479 -0.4968 1.4240 11 6 5.3060 -0.4122 1.5914 12 6 5.6231 0.3780 2.8638 13 8 4.9854 -0.2490 3.9798 14 6 3.5646 -0.3476 3.8504 15 6 3.2265 -1.1452 2.5880 16 6 4.0039 -2.6451 0.2535 17 6 3.7075 -3.3468 -1.0745 18 8 4.3275 -2.6260 -2.1413 19 6 3.8613 -1.2830 -2.2863 20 6 4.1638 -0.4984 -1.0071 21 1 -0.4851 0.8401 -0.0004 22 1 5.7218 -1.4164 1.6735 23 1 5.7424 0.0939 0.7303 24 1 5.2542 1.3985 2.7599 25 1 6.7013 0.3953 3.0231 26 1 3.1358 0.6517 3.7752 27 1 3.1534 -0.8554 4.7227 28 1 2.1452 -1.1741 2.4544 29 1 3.6086 -2.1613 2.6856 30 1 5.0787 -2.6479 0.4350 31 1 3.4954 -3.1683 1.0633 32 1 2.6300 -3.3795 -1.2358 33 1 4.1018 -4.3626 -1.0448 34 1 2.7858 -1.2886 -2.4636 35 1 4.3661 -0.8118 -3.1297 36 1 3.7697 0.5137 -1.0987 37 1 5.2418 -0.4578 -0.8510 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260391998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:46 Heat of formation + Delta-G solvation = -64.576529 kcal Electronic energy + Delta-G solvation = -19563.047013 eV Core-core repulsion = 16727.306845 eV Total energy + Delta-G solvation = -2835.740169 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.77979 -38.05779 -35.52903 -32.46027 -31.10742 -30.76733 -30.20900 -26.61180 -25.26240 -23.72766 -22.66522 -22.12032 -20.19617 -18.59592 -16.64862 -15.96201 -15.56445 -15.32760 -15.18840 -14.60963 -14.52421 -14.29780 -13.99829 -13.38641 -13.12773 -12.79667 -12.50264 -12.23293 -11.76318 -11.50549 -10.96036 -10.92933 -10.78111 -10.55507 -10.22270 -10.08388 -9.92175 -9.87634 -9.51228 -9.09946 -9.03795 -8.69143 -8.50589 -7.02983 -6.12810 -4.19302 3.37118 3.51374 3.74883 4.25402 4.55342 4.58180 4.67762 5.23219 5.46174 5.53454 5.60392 5.66548 5.75646 5.82415 5.84555 5.89154 5.98936 6.02281 6.08841 6.13679 6.18420 6.33600 6.34586 6.46236 6.55311 6.63779 6.74912 6.77506 6.84620 7.04762 7.50191 7.57741 7.88053 7.92954 8.10977 8.47583 8.85885 9.53249 10.96380 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.019820 B = 0.014163 C = 0.010748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.346103 B = 1976.570411 C = 2604.434395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.091 3.909 3 Si 0.868 3.132 4 H -0.295 1.295 5 H -0.311 1.311 6 H -0.203 1.203 7 C -0.515 4.515 8 H 0.074 0.926 9 C 0.209 3.791 10 N -0.517 5.517 11 C 0.006 3.994 12 C 0.066 3.934 13 O -0.395 6.395 14 C 0.062 3.938 15 C 0.029 3.971 16 C -0.164 4.164 17 C 0.074 3.926 18 O -0.396 6.396 19 C 0.073 3.927 20 C -0.145 4.145 21 H 0.264 0.736 22 H 0.035 0.965 23 H 0.078 0.922 24 H 0.052 0.948 25 H 0.085 0.915 26 H 0.052 0.948 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.030 0.970 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.535 -0.841 2.424 8.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.113 4.113 3 Si 0.698 3.302 4 H -0.224 1.224 5 H -0.240 1.240 6 H -0.125 1.125 7 C -0.553 4.553 8 H 0.092 0.908 9 C 0.122 3.878 10 N -0.241 5.241 11 C -0.122 4.122 12 C -0.011 4.011 13 O -0.314 6.314 14 C -0.015 4.015 15 C -0.099 4.099 16 C -0.203 4.203 17 C -0.003 4.003 18 O -0.315 6.315 19 C -0.004 4.004 20 C -0.183 4.183 21 H 0.073 0.927 22 H 0.053 0.947 23 H 0.096 0.904 24 H 0.070 0.930 25 H 0.103 0.897 26 H 0.070 0.930 27 H 0.106 0.894 28 H 0.121 0.879 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.434 -0.410 2.468 8.797 hybrid contribution 0.191 0.378 -0.083 0.432 sum 8.625 -0.032 2.385 8.949 Atomic orbital electron populations 1.69955 1.06837 1.27430 1.48665 1.24919 0.94332 0.99676 0.92420 0.87291 0.83292 0.81752 0.77865 1.22351 1.24009 1.12508 1.20673 0.88103 0.94664 1.51836 0.90801 1.19074 0.96315 0.87101 0.85309 1.63264 1.05535 1.52194 1.03143 1.22820 0.92310 0.99098 0.97990 1.22604 0.96729 0.95936 0.85857 1.87874 1.20535 1.81065 1.41893 1.22734 0.80727 1.00069 0.97975 1.22570 1.02724 0.94958 0.89693 1.22621 0.99442 1.00108 0.98165 1.22396 0.98057 0.93557 0.86304 1.87735 1.65850 1.25505 1.52450 1.22436 1.00077 0.81674 0.96203 1.22493 0.98662 1.00006 0.97141 0.92684 0.94686 0.90422 0.92998 0.89691 0.92954 0.89383 0.87873 0.95181 0.93416 0.91664 0.92092 0.91038 0.91531 0.90815 0.91744 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 13.96 55.43 0.77 -25.08 16 2 C 0.09 2.45 5.42 -17.82 -0.10 2.35 16 3 Si 0.87 20.89 23.84 -169.99 -4.05 16.84 16 4 H -0.29 -7.13 6.87 56.52 0.39 -6.74 16 5 H -0.31 -7.87 7.11 56.52 0.40 -7.47 16 6 H -0.20 -4.56 5.18 56.52 0.29 -4.27 16 7 C -0.52 -13.00 5.58 -34.44 -0.19 -13.19 16 8 H 0.07 2.06 7.01 -52.49 -0.37 1.69 16 9 C 0.21 4.47 0.04 -132.57 -0.01 4.47 16 10 N -0.52 -10.50 1.34 -219.78 -0.29 -10.80 16 11 C 0.01 0.11 4.73 -3.71 -0.02 0.09 16 12 C 0.07 1.06 7.01 37.21 0.26 1.32 16 13 O -0.39 -6.93 10.83 -35.23 -0.38 -7.31 16 14 C 0.06 1.07 7.01 37.21 0.26 1.33 16 15 C 0.03 0.56 4.96 -3.71 -0.02 0.54 16 16 C -0.16 -3.20 4.16 -26.59 -0.11 -3.31 16 17 C 0.07 1.40 6.61 37.21 0.25 1.64 16 18 O -0.40 -7.87 10.77 -35.23 -0.38 -8.25 16 19 C 0.07 1.45 6.62 37.20 0.25 1.69 16 20 C -0.15 -2.99 4.22 -26.60 -0.11 -3.10 16 21 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 22 H 0.04 0.62 6.45 -51.93 -0.34 0.29 16 23 H 0.08 1.33 6.05 -51.93 -0.31 1.02 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.10 2.27 6.99 -51.93 -0.36 1.90 16 29 H 0.03 0.58 6.53 -51.93 -0.34 0.24 16 30 H 0.05 0.89 6.39 -51.93 -0.33 0.56 16 31 H 0.06 1.28 6.66 -51.93 -0.35 0.93 16 32 H 0.06 1.24 6.79 -51.93 -0.35 0.89 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.44 7.38 -51.93 -0.38 1.06 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.06 1.41 3.32 -51.93 -0.17 1.24 16 37 H 0.05 0.90 6.14 -51.93 -0.32 0.58 16 LS Contribution 263.12 15.07 3.97 3.97 Total: -1.00 -28.43 263.12 -5.33 -33.75 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -5.42 Total: 3.05 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 0.46 Total: -6.16 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.48 Total: -35.88 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.76 Total: -15.57 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.05 Total: 16.84 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.43 -5.33 -33.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260391998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.824 kcal (2) G-P(sol) polarization free energy of solvation -28.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds