Wall clock time and date at job start Mon Mar 30 2020 03:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99930 * 2 1 4 4 H 1.48505 * 109.46854 * 265.24976 * 3 2 1 5 5 H 1.48502 * 109.47221 * 25.24414 * 3 2 1 6 6 H 1.48499 * 109.47317 * 145.24892 * 3 2 1 7 7 C 1.37873 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00403 * 7.99043 * 7 2 1 9 9 C 1.50704 * 120.00110 * 187.98929 * 7 2 1 10 10 N 1.46908 * 109.54076 * 55.40338 * 9 7 2 11 11 C 1.47011 * 110.99817 * 183.45662 * 10 9 7 12 12 C 1.53099 * 109.25741 * 177.61030 * 11 10 9 13 13 O 1.43015 * 109.25904 * 56.84867 * 12 11 10 14 14 C 1.43011 * 113.73926 * 301.33297 * 13 12 11 15 15 C 1.47019 * 110.99510 * 59.82375 * 10 9 7 16 16 C 1.53169 * 109.61826 * 175.62586 * 9 7 2 17 17 C 1.53094 * 109.16225 * 62.93216 * 16 9 7 18 18 O 1.42905 * 109.41216 * 57.60905 * 17 16 9 19 19 C 1.42895 * 114.09609 * 298.84078 * 18 17 16 20 20 C 1.53086 * 109.41716 * 61.16113 * 19 18 17 21 21 H 0.97006 * 120.00512 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.50928 * 297.54526 * 11 10 9 23 23 H 1.09004 * 109.50576 * 57.67667 * 11 10 9 24 24 H 1.09004 * 109.50770 * 296.91369 * 12 11 10 25 25 H 1.09000 * 109.54542 * 176.80568 * 12 11 10 26 26 H 1.08998 * 109.50791 * 298.73311 * 14 13 12 27 27 H 1.08997 * 109.54239 * 178.62645 * 14 13 12 28 28 H 1.08996 * 109.50834 * 302.32518 * 15 10 9 29 29 H 1.09000 * 109.50296 * 62.41714 * 15 10 9 30 30 H 1.09004 * 109.52615 * 182.83783 * 16 9 7 31 31 H 1.08998 * 109.52480 * 303.02525 * 16 9 7 32 32 H 1.08997 * 109.47962 * 297.62544 * 17 16 9 33 33 H 1.08997 * 109.47953 * 177.59079 * 17 16 9 34 34 H 1.09005 * 109.48450 * 301.17375 * 19 18 17 35 35 H 1.09003 * 109.49199 * 181.15094 * 19 18 17 36 36 H 1.09001 * 109.52358 * 182.48373 * 20 19 18 37 37 H 1.09000 * 109.52164 * 62.29664 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5969 1.9884 -1.3953 5 1 1.3999 2.6796 0.5971 6 1 3.4928 1.4713 0.7980 7 6 2.0045 -1.1940 0.0005 8 1 1.4724 -2.1249 -0.1291 9 6 3.5005 -1.2003 0.1819 10 7 3.8479 -0.4968 1.4240 11 6 5.3060 -0.4122 1.5914 12 6 5.6231 0.3780 2.8638 13 8 4.9854 -0.2490 3.9798 14 6 3.5646 -0.3476 3.8504 15 6 3.2265 -1.1452 2.5880 16 6 4.0039 -2.6451 0.2535 17 6 3.7075 -3.3468 -1.0745 18 8 4.3275 -2.6260 -2.1413 19 6 3.8613 -1.2830 -2.2863 20 6 4.1638 -0.4984 -1.0071 21 1 -0.4851 0.8401 -0.0004 22 1 5.7218 -1.4164 1.6735 23 1 5.7424 0.0939 0.7303 24 1 5.2542 1.3985 2.7599 25 1 6.7013 0.3953 3.0231 26 1 3.1358 0.6517 3.7752 27 1 3.1534 -0.8554 4.7227 28 1 2.1452 -1.1741 2.4544 29 1 3.6086 -2.1613 2.6856 30 1 5.0787 -2.6479 0.4350 31 1 3.4954 -3.1683 1.0633 32 1 2.6300 -3.3795 -1.2358 33 1 4.1018 -4.3626 -1.0448 34 1 2.7858 -1.2886 -2.4636 35 1 4.3661 -0.8118 -3.1297 36 1 3.7697 0.5137 -1.0987 37 1 5.2418 -0.4578 -0.8510 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260391998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:46 Heat of formation + Delta-G solvation = -84.780456 kcal Electronic energy + Delta-G solvation = -19563.923121 eV Core-core repulsion = 16727.306845 eV Total energy + Delta-G solvation = -2836.616277 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.34787 -39.52120 -37.08037 -34.40897 -32.74586 -32.26869 -31.72255 -28.23644 -27.02905 -25.23599 -24.21291 -23.71592 -21.70910 -20.35120 -18.29930 -17.62827 -17.11589 -16.88056 -16.80609 -16.22976 -15.96849 -15.79852 -15.53175 -15.06761 -14.80735 -14.42804 -14.11214 -14.05356 -13.35172 -12.96857 -12.54244 -12.47504 -12.36230 -12.31684 -11.92669 -11.72349 -11.60713 -11.46434 -11.26959 -10.77368 -10.56024 -10.48401 -10.33856 -8.64588 -8.22684 -6.29245 1.42281 1.53954 1.81333 2.55278 2.90523 3.03774 3.08162 3.33718 4.05970 4.08012 4.14799 4.21528 4.26130 4.32032 4.39774 4.40139 4.45976 4.54163 4.57915 4.73170 4.80619 4.82259 4.85307 4.97581 5.04252 5.09752 5.14100 5.16583 5.23003 5.40961 5.69608 6.06442 6.22368 6.33606 6.41795 6.58277 6.82992 7.45608 8.90123 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.019820 B = 0.014163 C = 0.010748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.346103 B = 1976.570411 C = 2604.434395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.043 3.957 3 Si 0.918 3.082 4 H -0.294 1.294 5 H -0.331 1.331 6 H -0.173 1.173 7 C -0.495 4.495 8 H 0.034 0.966 9 C 0.207 3.793 10 N -0.532 5.532 11 C 0.006 3.994 12 C 0.064 3.936 13 O -0.399 6.399 14 C 0.068 3.932 15 C 0.034 3.966 16 C -0.158 4.158 17 C 0.073 3.927 18 O -0.395 6.395 19 C 0.072 3.928 20 C -0.145 4.145 21 H 0.259 0.741 22 H 0.040 0.960 23 H 0.089 0.911 24 H 0.051 0.949 25 H 0.120 0.880 26 H 0.046 0.954 27 H 0.111 0.889 28 H 0.068 0.932 29 H 0.033 0.967 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.035 0.965 33 H 0.104 0.896 34 H 0.036 0.964 35 H 0.105 0.895 36 H 0.053 0.947 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.749 -0.620 2.913 12.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.156 4.156 3 Si 0.747 3.253 4 H -0.223 1.223 5 H -0.262 1.262 6 H -0.094 1.094 7 C -0.533 4.533 8 H 0.052 0.948 9 C 0.119 3.881 10 N -0.257 5.257 11 C -0.122 4.122 12 C -0.012 4.012 13 O -0.317 6.317 14 C -0.009 4.009 15 C -0.095 4.095 16 C -0.197 4.197 17 C -0.004 4.004 18 O -0.314 6.314 19 C -0.005 4.005 20 C -0.183 4.183 21 H 0.068 0.932 22 H 0.058 0.942 23 H 0.107 0.893 24 H 0.069 0.931 25 H 0.137 0.863 26 H 0.065 0.935 27 H 0.129 0.871 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.122 0.878 34 H 0.055 0.945 35 H 0.123 0.877 36 H 0.071 0.929 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.683 -0.207 2.958 12.054 hybrid contribution -0.810 0.192 -0.239 0.866 sum 10.873 -0.015 2.720 11.208 Atomic orbital electron populations 1.70091 1.08608 1.27698 1.51996 1.25575 0.94643 1.02700 0.92726 0.86575 0.82938 0.77750 0.77992 1.22282 1.26171 1.09372 1.20788 0.90464 0.92637 1.49413 0.94766 1.18979 0.93643 0.88924 0.86534 1.63034 1.07872 1.52096 1.02692 1.22928 0.89921 0.99879 0.99469 1.22788 0.98612 0.95287 0.84559 1.87884 1.20191 1.81180 1.42488 1.22698 0.81080 0.99560 0.97552 1.22467 1.00569 0.95717 0.90715 1.22533 1.00226 0.98704 0.98216 1.22456 0.96862 0.95120 0.85941 1.87746 1.65555 1.25416 1.52653 1.22460 0.98790 0.82033 0.97177 1.22469 1.00021 0.99089 0.96683 0.93194 0.94214 0.89315 0.93106 0.86255 0.93541 0.87111 0.91342 0.94901 0.91623 0.92291 0.94634 0.87832 0.94513 0.87724 0.92920 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.20 13.96 21.44 0.30 -56.90 16 2 C 0.04 2.35 5.42 84.65 0.46 2.81 16 3 Si 0.92 43.35 23.84 68.60 1.64 44.99 16 4 H -0.29 -13.74 6.87 99.48 0.68 -13.05 16 5 H -0.33 -16.66 7.11 99.48 0.71 -15.96 16 6 H -0.17 -7.26 5.18 99.48 0.52 -6.74 16 7 C -0.50 -25.58 5.58 25.60 0.14 -25.44 16 8 H 0.03 2.00 7.01 -2.91 -0.02 1.98 16 9 C 0.21 8.57 0.04 2.90 0.00 8.57 16 10 N -0.53 -20.47 1.34 -849.24 -1.14 -21.61 16 11 C 0.01 0.19 4.73 86.32 0.41 0.59 16 12 C 0.06 1.79 7.01 72.02 0.50 2.29 16 13 O -0.40 -12.55 10.83 -148.98 -1.61 -14.16 16 14 C 0.07 2.19 7.01 72.02 0.50 2.70 16 15 C 0.03 1.27 4.96 86.31 0.43 1.70 16 16 C -0.16 -5.84 4.16 30.68 0.13 -5.71 16 17 C 0.07 2.66 6.61 72.01 0.48 3.14 16 18 O -0.39 -14.77 10.77 -148.98 -1.60 -16.37 16 19 C 0.07 2.74 6.62 72.01 0.48 3.22 16 20 C -0.14 -5.59 4.22 30.68 0.13 -5.46 16 21 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 22 H 0.04 1.23 6.45 -2.39 -0.02 1.21 16 23 H 0.09 2.60 6.05 -2.38 -0.01 2.59 16 24 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 28 H 0.07 3.06 6.99 -2.39 -0.02 3.05 16 29 H 0.03 1.22 6.53 -2.39 -0.02 1.20 16 30 H 0.07 2.22 6.39 -2.38 -0.02 2.21 16 31 H 0.06 2.25 6.66 -2.39 -0.02 2.23 16 32 H 0.04 1.47 6.79 -2.39 -0.02 1.45 16 33 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 34 H 0.04 1.60 7.38 -2.38 -0.02 1.58 16 35 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 36 H 0.05 2.18 3.32 -2.39 -0.01 2.17 16 37 H 0.07 2.48 6.14 -2.39 -0.01 2.46 16 Total: -1.00 -62.09 263.12 2.09 -60.00 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.85 Total: 15.64 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 3.66 Total: -11.59 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -0.84 Total: -78.51 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -3.22 Total: -30.53 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.64 Total: 44.99 kcal Total: -62.09 2.09 -60.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260391998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.780 kcal (2) G-P(sol) polarization free energy of solvation -62.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds