Wall clock time and date at job start Mon Mar 30 2020 03:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47375 * 2 1 4 4 C 1.52999 * 109.47342 * 239.99788 * 2 1 3 5 5 C 1.53005 * 109.47085 * 119.99969 * 2 1 3 6 6 N 1.46508 * 109.47005 * 54.55719 * 5 2 1 7 7 C 1.33684 * 118.59412 * 88.13940 * 6 5 2 8 8 O 1.21290 * 118.88267 * 1.88975 * 7 6 5 9 9 C 1.50341 * 122.28312 * 181.86210 * 7 6 5 10 10 O 1.42964 * 109.80951 * 344.12600 * 9 7 6 11 11 C 1.43248 * 112.98574 * 49.60209 * 10 9 7 12 12 C 1.46087 * 118.72605 * 268.16833 * 6 5 2 13 13 H 1.08999 * 109.40039 * 41.57442 * 12 6 5 14 14 C 1.50707 * 109.39356 * 281.75552 * 12 6 5 15 15 H 1.07990 * 119.99940 * 333.89136 * 14 12 6 16 16 C 1.37878 * 119.99810 * 153.89843 * 14 12 6 17 17 N 1.31518 * 119.99967 * 8.06049 * 16 14 12 18 18 Si 1.86798 * 120.00044 * 188.06321 * 16 14 12 19 19 H 1.48493 * 109.47037 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47123 * 59.99446 * 18 16 14 21 21 H 1.48506 * 109.46751 * 299.99684 * 18 16 14 22 22 H 1.09002 * 109.47357 * 299.99987 * 1 2 3 23 23 H 1.09002 * 109.47034 * 59.99979 * 1 2 3 24 24 H 1.08999 * 109.47514 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47122 * 179.97438 * 3 2 1 26 26 H 1.08993 * 109.47156 * 299.99892 * 3 2 1 27 27 H 1.09002 * 109.46868 * 59.99713 * 3 2 1 28 28 H 1.09004 * 109.46856 * 306.09769 * 4 2 1 29 29 H 1.09000 * 109.47076 * 66.09120 * 4 2 1 30 30 H 1.08994 * 109.47630 * 186.09603 * 4 2 1 31 31 H 1.09004 * 109.47131 * 294.55777 * 5 2 1 32 32 H 1.09002 * 109.47152 * 174.55586 * 5 2 1 33 33 H 1.09007 * 109.41437 * 224.02685 * 9 7 6 34 34 H 1.08999 * 109.41549 * 104.23318 * 9 7 6 35 35 H 1.08997 * 109.60305 * 171.87740 * 11 10 9 36 36 H 1.08995 * 109.60549 * 51.38502 * 11 10 9 37 37 H 0.96998 * 120.00023 * 355.25315 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2493 6 7 1.4475 -2.0595 1.3166 7 6 2.0710 -3.0671 0.6975 8 8 3.1212 -2.8471 0.1319 9 6 1.5160 -4.4642 0.6784 10 8 0.5048 -4.5976 1.6802 11 6 -0.4696 -3.5485 1.6345 12 6 0.2004 -2.2390 2.0560 13 1 -0.4691 -1.4053 1.8443 14 6 0.4961 -2.2808 3.5332 15 1 1.4664 -2.6031 3.8807 16 6 -0.4724 -1.9078 4.4409 17 7 -1.6993 -1.6684 4.0323 18 14 -0.0418 -1.7425 6.2510 19 1 -1.2494 -1.3322 7.0116 20 1 1.0188 -0.7162 6.4158 21 1 0.4477 -3.0471 6.7645 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.5902 -1.7126 -1.3054 29 1 1.7684 -0.1484 -2.1358 30 1 3.1245 -0.8168 -1.1963 31 1 1.7584 -0.1542 2.1366 32 1 3.1256 -0.8065 1.2019 33 1 2.3180 -5.1754 0.8763 34 1 1.0847 -4.6694 -0.3014 35 1 -1.2865 -3.7782 2.3187 36 1 -0.8556 -3.4518 0.6198 37 1 -1.9073 -1.6868 3.0850 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260432078.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:15 Heat of formation + Delta-G solvation = -90.250534 kcal Electronic energy + Delta-G solvation = -19155.823422 eV Core-core repulsion = 16318.969944 eV Total energy + Delta-G solvation = -2836.853477 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.20350 -37.24349 -36.65982 -34.32490 -32.55527 -29.04330 -27.72421 -26.98284 -26.87835 -25.18857 -24.24015 -22.23005 -18.98512 -18.29411 -17.01055 -16.68090 -16.10790 -15.61367 -14.50975 -14.30930 -14.08646 -13.90492 -13.69578 -13.31255 -12.94889 -12.86049 -12.36005 -12.01082 -11.95226 -11.39527 -11.25703 -11.23265 -10.89527 -10.78927 -10.69226 -10.51617 -10.38879 -10.21445 -10.17784 -9.78209 -9.19424 -8.77559 -8.36161 -7.69821 -6.56536 -4.31249 3.20678 3.36719 3.37936 3.56366 3.71558 4.39241 4.56034 5.08598 5.12260 5.14936 5.22266 5.29452 5.57267 5.73732 5.83287 5.85540 5.87944 5.92903 6.06817 6.14744 6.16614 6.17094 6.30320 6.33682 6.42068 6.50591 6.52647 6.63668 6.71808 6.78001 7.16000 7.60865 7.83848 8.18607 8.38379 8.62125 8.82288 9.37437 10.78205 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021531 B = 0.010489 C = 0.008471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.135557 B = 2668.796391 C = 3304.611587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.085 4.085 3 C -0.135 4.135 4 C -0.126 4.126 5 C 0.127 3.873 6 N -0.568 5.568 7 C 0.480 3.520 8 O -0.574 6.574 9 C 0.050 3.950 10 O -0.364 6.364 11 C 0.054 3.946 12 C 0.212 3.788 13 H 0.063 0.937 14 C -0.594 4.594 15 H 0.056 0.944 16 C 0.027 3.973 17 N -0.903 5.903 18 Si 1.069 2.931 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.286 1.286 22 H 0.057 0.943 23 H 0.046 0.954 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.025 0.975 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.688 1.942 -6.842 7.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.086 4.086 3 C -0.193 4.193 4 C -0.183 4.183 5 C 0.003 3.997 6 N -0.297 5.297 7 C 0.267 3.733 8 O -0.457 6.457 9 C -0.030 4.030 10 O -0.282 6.282 11 C -0.023 4.023 12 C 0.110 3.890 13 H 0.081 0.919 14 C -0.633 4.633 15 H 0.075 0.925 16 C -0.178 4.178 17 N -0.538 5.538 18 Si 0.897 3.103 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.212 1.212 22 H 0.076 0.924 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.133 0.867 34 H 0.089 0.911 35 H 0.124 0.876 36 H 0.043 0.957 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.518 2.210 -5.468 6.413 hybrid contribution 0.562 -0.185 -1.643 1.746 sum 3.080 2.025 -7.111 8.010 Atomic orbital electron populations 1.21951 0.94675 1.01951 1.01058 1.20961 0.95986 0.95302 0.96327 1.21778 1.00804 0.95233 1.01514 1.21804 1.01565 0.99312 0.95611 1.21401 0.98212 0.83228 0.96832 1.47722 1.25375 1.07338 1.49233 1.20806 0.85142 0.88162 0.79153 1.90623 1.23485 1.84531 1.47043 1.22629 0.92664 0.94265 0.93451 1.88153 1.38131 1.48334 1.53562 1.23318 0.91582 0.88958 0.98487 1.19801 0.81948 0.94611 0.92627 0.91938 1.22074 1.02651 1.48622 0.89916 0.92547 1.25848 0.92682 0.93050 1.06247 1.70897 1.18521 1.46512 1.17916 0.83517 0.75662 0.76819 0.74324 1.20672 1.21332 1.21225 0.92354 0.93536 0.92397 0.92772 0.92882 0.92550 0.93356 0.94130 0.92081 0.90087 0.90884 0.86742 0.91094 0.87600 0.95721 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 7.07 37.15 0.26 -2.01 16 2 C -0.08 -1.38 0.85 -154.51 -0.13 -1.51 16 3 C -0.14 -1.86 8.47 37.16 0.31 -1.54 16 4 C -0.13 -2.05 7.03 37.16 0.26 -1.79 16 5 C 0.13 2.44 4.48 -4.03 -0.02 2.42 16 6 N -0.57 -11.96 1.94 -168.17 -0.33 -12.28 16 7 C 0.48 10.02 6.16 -11.65 -0.07 9.95 16 8 O -0.57 -12.66 14.16 5.55 0.08 -12.58 16 9 C 0.05 0.92 6.98 35.83 0.25 1.18 16 10 O -0.36 -7.76 10.72 -35.23 -0.38 -8.14 16 11 C 0.05 1.15 6.06 37.17 0.23 1.37 16 12 C 0.21 4.79 1.30 -69.29 -0.09 4.70 16 13 H 0.06 1.45 4.55 -51.93 -0.24 1.21 16 14 C -0.59 -15.38 8.24 -34.44 -0.28 -15.66 16 15 H 0.06 1.56 7.83 -52.49 -0.41 1.14 16 16 C 0.03 0.70 5.44 -17.82 -0.10 0.61 16 17 N -0.90 -24.44 13.62 55.43 0.76 -23.68 16 18 Si 1.07 23.86 29.91 -169.99 -5.08 18.77 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 22 H 0.06 1.00 7.85 -51.93 -0.41 0.59 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 1.02 6.10 -51.93 -0.32 0.71 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.86 6.46 -51.93 -0.34 0.53 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 1.05 7.52 -51.93 -0.39 0.66 16 31 H 0.08 1.63 7.90 -51.93 -0.41 1.22 16 32 H 0.07 1.45 7.28 -51.93 -0.38 1.07 16 33 H 0.11 1.92 8.14 -51.93 -0.42 1.49 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.11 2.39 7.84 -51.93 -0.41 1.99 16 36 H 0.02 0.47 8.09 -51.93 -0.42 0.05 16 37 H 0.27 7.01 6.42 -40.82 -0.26 6.75 16 LS Contribution 288.61 15.07 4.35 4.35 Total: -1.00 -28.31 288.61 -5.71 -34.02 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.73 Total: 1.83 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 0.62 Total: -2.29 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.43 Total: -35.97 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.30 Total: -20.72 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -5.08 Total: 18.77 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.31 -5.71 -34.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260432078.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.231 kcal (2) G-P(sol) polarization free energy of solvation -28.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds