Wall clock time and date at job start Mon Mar 30 2020 03:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47375 * 2 1 4 4 C 1.52999 * 109.47342 * 239.99788 * 2 1 3 5 5 C 1.53005 * 109.47085 * 119.99969 * 2 1 3 6 6 N 1.46508 * 109.47005 * 54.55719 * 5 2 1 7 7 C 1.33684 * 118.59412 * 88.13940 * 6 5 2 8 8 O 1.21290 * 118.88267 * 1.88975 * 7 6 5 9 9 C 1.50341 * 122.28312 * 181.86210 * 7 6 5 10 10 O 1.42964 * 109.80951 * 344.12600 * 9 7 6 11 11 C 1.43248 * 112.98574 * 49.60209 * 10 9 7 12 12 C 1.46087 * 118.72605 * 268.16833 * 6 5 2 13 13 H 1.08999 * 109.40039 * 41.57442 * 12 6 5 14 14 C 1.50707 * 109.39356 * 281.75552 * 12 6 5 15 15 H 1.07990 * 119.99940 * 333.89136 * 14 12 6 16 16 C 1.37878 * 119.99810 * 153.89843 * 14 12 6 17 17 N 1.31518 * 119.99967 * 8.06049 * 16 14 12 18 18 Si 1.86798 * 120.00044 * 188.06321 * 16 14 12 19 19 H 1.48493 * 109.47037 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47123 * 59.99446 * 18 16 14 21 21 H 1.48506 * 109.46751 * 299.99684 * 18 16 14 22 22 H 1.09002 * 109.47357 * 299.99987 * 1 2 3 23 23 H 1.09002 * 109.47034 * 59.99979 * 1 2 3 24 24 H 1.08999 * 109.47514 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47122 * 179.97438 * 3 2 1 26 26 H 1.08993 * 109.47156 * 299.99892 * 3 2 1 27 27 H 1.09002 * 109.46868 * 59.99713 * 3 2 1 28 28 H 1.09004 * 109.46856 * 306.09769 * 4 2 1 29 29 H 1.09000 * 109.47076 * 66.09120 * 4 2 1 30 30 H 1.08994 * 109.47630 * 186.09603 * 4 2 1 31 31 H 1.09004 * 109.47131 * 294.55777 * 5 2 1 32 32 H 1.09002 * 109.47152 * 174.55586 * 5 2 1 33 33 H 1.09007 * 109.41437 * 224.02685 * 9 7 6 34 34 H 1.08999 * 109.41549 * 104.23318 * 9 7 6 35 35 H 1.08997 * 109.60305 * 171.87740 * 11 10 9 36 36 H 1.08995 * 109.60549 * 51.38502 * 11 10 9 37 37 H 0.96998 * 120.00023 * 355.25315 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2493 6 7 1.4475 -2.0595 1.3166 7 6 2.0710 -3.0671 0.6975 8 8 3.1212 -2.8471 0.1319 9 6 1.5160 -4.4642 0.6784 10 8 0.5048 -4.5976 1.6802 11 6 -0.4696 -3.5485 1.6345 12 6 0.2004 -2.2390 2.0560 13 1 -0.4691 -1.4053 1.8443 14 6 0.4961 -2.2808 3.5332 15 1 1.4664 -2.6031 3.8807 16 6 -0.4724 -1.9078 4.4409 17 7 -1.6993 -1.6684 4.0323 18 14 -0.0418 -1.7425 6.2510 19 1 -1.2494 -1.3322 7.0116 20 1 1.0188 -0.7162 6.4158 21 1 0.4477 -3.0471 6.7645 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.5902 -1.7126 -1.3054 29 1 1.7684 -0.1484 -2.1358 30 1 3.1245 -0.8168 -1.1963 31 1 1.7584 -0.1542 2.1366 32 1 3.1256 -0.8065 1.2019 33 1 2.3180 -5.1754 0.8763 34 1 1.0847 -4.6694 -0.3014 35 1 -1.2865 -3.7782 2.3187 36 1 -0.8556 -3.4518 0.6198 37 1 -1.9073 -1.6868 3.0850 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260432078.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:14 Heat of formation + Delta-G solvation = -107.172314 kcal Electronic energy + Delta-G solvation = -19156.557205 eV Core-core repulsion = 16318.969944 eV Total energy + Delta-G solvation = -2837.587260 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.83238 -38.80294 -38.23296 -36.04743 -34.36672 -30.76832 -29.28578 -28.21603 -28.18579 -27.02709 -25.86587 -24.00874 -20.53999 -19.89987 -18.72369 -18.38817 -17.77811 -17.19705 -16.09473 -15.90956 -15.65548 -15.48705 -15.23376 -14.95713 -14.55617 -14.38644 -14.09311 -13.34461 -13.26768 -12.93724 -12.82467 -12.64194 -12.59330 -12.39222 -12.24267 -12.03142 -11.94012 -11.73723 -11.59745 -11.45106 -11.02253 -10.62455 -10.12970 -9.45218 -8.61098 -6.38103 1.53686 1.57450 1.61160 1.80067 2.10019 2.54261 2.94012 3.16464 3.51084 3.81965 3.86857 3.97029 4.09471 4.26512 4.33284 4.42409 4.51082 4.55973 4.63057 4.74020 4.79598 4.85009 4.85721 4.90872 4.98172 5.00132 5.14474 5.23239 5.36605 5.45423 5.54343 5.81875 6.03064 6.17291 6.50712 6.71203 7.14676 7.36680 8.73435 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021531 B = 0.010489 C = 0.008471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.135557 B = 2668.796391 C = 3304.611587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.081 4.081 3 C -0.131 4.131 4 C -0.116 4.116 5 C 0.125 3.875 6 N -0.572 5.572 7 C 0.473 3.527 8 O -0.589 6.589 9 C 0.048 3.952 10 O -0.380 6.380 11 C 0.060 3.940 12 C 0.217 3.783 13 H 0.058 0.942 14 C -0.604 4.604 15 H 0.033 0.967 16 C -0.010 4.010 17 N -0.921 5.921 18 Si 1.105 2.895 19 H -0.280 1.280 20 H -0.276 1.276 21 H -0.280 1.280 22 H 0.044 0.956 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.030 0.970 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.134 0.866 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.052 0.948 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.843 2.262 -7.824 8.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.082 4.082 3 C -0.188 4.188 4 C -0.174 4.174 5 C 0.002 3.998 6 N -0.300 5.300 7 C 0.261 3.739 8 O -0.472 6.472 9 C -0.031 4.031 10 O -0.298 6.298 11 C -0.017 4.017 12 C 0.115 3.885 13 H 0.075 0.925 14 C -0.642 4.642 15 H 0.051 0.949 16 C -0.211 4.211 17 N -0.558 5.558 18 Si 0.929 3.071 19 H -0.205 1.205 20 H -0.202 1.202 21 H -0.206 1.206 22 H 0.063 0.937 23 H 0.090 0.910 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.152 0.848 34 H 0.121 0.879 35 H 0.106 0.894 36 H 0.070 0.930 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.684 2.530 -6.467 7.445 hybrid contribution 0.569 -0.299 -1.378 1.520 sum 3.253 2.231 -7.844 8.780 Atomic orbital electron populations 1.21879 0.94534 1.01028 1.01611 1.20939 0.95980 0.96561 0.94700 1.21747 1.01155 0.93357 1.02591 1.21699 1.00465 0.98716 0.96488 1.21484 0.97618 0.82789 0.97936 1.47707 1.24993 1.08232 1.49100 1.21262 0.84949 0.88949 0.78741 1.90614 1.24006 1.84901 1.47700 1.22870 0.92692 0.93111 0.94418 1.88122 1.38667 1.48117 1.54921 1.23113 0.91094 0.88018 0.99524 1.19633 0.82515 0.95235 0.91156 0.92462 1.22213 1.01490 1.48517 0.91997 0.94888 1.26854 0.92390 0.92568 1.09271 1.70968 1.19053 1.47888 1.17869 0.83037 0.75748 0.77300 0.71030 1.20535 1.20178 1.20572 0.93685 0.91011 0.94052 0.92261 0.90698 0.92593 0.95131 0.91578 0.93339 0.91730 0.91852 0.84829 0.87862 0.89357 0.92972 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 7.07 71.98 0.51 -3.66 16 2 C -0.08 -2.52 0.85 -52.18 -0.04 -2.57 16 3 C -0.13 -3.31 8.47 71.98 0.61 -2.70 16 4 C -0.12 -3.58 7.03 71.98 0.51 -3.07 16 5 C 0.12 4.81 4.48 86.38 0.39 5.20 16 6 N -0.57 -23.98 1.94 -804.97 -1.56 -25.54 16 7 C 0.47 19.30 6.16 87.71 0.54 19.84 16 8 O -0.59 -25.43 14.16 -3.06 -0.04 -25.47 16 9 C 0.05 1.70 6.98 71.12 0.50 2.19 16 10 O -0.38 -15.78 10.72 -148.98 -1.60 -17.37 16 11 C 0.06 2.52 6.06 71.99 0.44 2.95 16 12 C 0.22 9.84 1.30 44.33 0.06 9.90 16 13 H 0.06 2.68 4.55 -2.39 -0.01 2.67 16 14 C -0.60 -31.62 8.24 25.60 0.21 -31.40 16 15 H 0.03 1.85 7.83 -2.92 -0.02 1.82 16 16 C -0.01 -0.51 5.44 84.65 0.46 -0.05 16 17 N -0.92 -50.12 13.62 21.45 0.29 -49.83 16 18 Si 1.11 48.05 29.91 68.60 2.05 50.10 16 19 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 20 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 22 H 0.04 1.51 7.85 -2.39 -0.02 1.49 16 23 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.04 1.41 6.10 -2.39 -0.01 1.40 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.03 1.03 6.46 -2.38 -0.02 1.01 16 29 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.05 1.60 7.52 -2.39 -0.02 1.58 16 31 H 0.06 2.65 7.90 -2.38 -0.02 2.64 16 32 H 0.06 2.53 7.28 -2.39 -0.02 2.51 16 33 H 0.13 4.18 8.14 -2.38 -0.02 4.16 16 34 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 35 H 0.09 4.01 7.84 -2.39 -0.02 3.99 16 36 H 0.05 1.89 8.09 -2.39 -0.02 1.87 16 37 H 0.26 14.01 6.42 -92.71 -0.60 13.41 16 Total: -1.00 -59.76 288.61 4.53 -55.24 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 1.21 Total: 16.24 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 4.17 Total: -3.37 kcal Atomic # 7 Polarization: -74.09 SS G_CDS: -1.27 Total: -75.36 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -1.64 Total: -42.85 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.05 Total: 50.10 kcal Total: -59.76 4.53 -55.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260432078.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.935 kcal (2) G-P(sol) polarization free energy of solvation -59.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds