Wall clock time and date at job start Mon Mar 30 2020 03:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 112.99584 * 2 1 4 4 N 1.46899 * 109.47270 * 22.82993 * 3 2 1 5 5 C 1.47015 * 111.00107 * 213.37477 * 4 3 2 6 6 C 1.53096 * 109.29024 * 177.62896 * 5 4 3 7 7 O 1.43019 * 109.25898 * 56.83119 * 6 5 4 8 8 C 1.43018 * 113.73576 * 301.32682 * 7 6 5 9 9 C 1.47015 * 111.03282 * 89.71571 * 4 3 2 10 10 H 1.09004 * 109.47010 * 62.41970 * 9 4 3 11 11 C 1.50701 * 109.54687 * 302.33200 * 9 4 3 12 12 H 1.08003 * 119.99539 * 324.06922 * 11 9 4 13 13 C 1.37868 * 120.00297 * 144.07088 * 11 9 4 14 14 N 1.31514 * 120.00099 * 180.02562 * 13 11 9 15 15 Si 1.86806 * 120.00005 * 359.97438 * 13 11 9 16 16 H 1.48501 * 109.47078 * 90.00326 * 15 13 11 17 17 H 1.48497 * 109.47118 * 209.99956 * 15 13 11 18 18 H 1.48493 * 109.47224 * 330.00314 * 15 13 11 19 19 C 1.54029 * 113.93102 * 131.92989 * 2 1 3 20 20 O 1.44173 * 85.52052 * 91.66433 * 19 2 1 21 21 C 1.44176 * 93.33986 * 24.19376 * 20 19 2 22 22 H 1.09001 * 109.47942 * 49.12035 * 1 2 3 23 23 H 1.09005 * 109.46915 * 169.11885 * 1 2 3 24 24 H 1.09006 * 109.47277 * 289.11539 * 1 2 3 25 25 H 1.09001 * 109.46884 * 262.83238 * 3 2 1 26 26 H 1.08997 * 109.47049 * 142.83727 * 3 2 1 27 27 H 1.09006 * 109.50442 * 57.67820 * 5 4 3 28 28 H 1.08997 * 109.50548 * 297.58754 * 5 4 3 29 29 H 1.09005 * 109.50663 * 176.76240 * 6 5 4 30 30 H 1.09002 * 109.51237 * 296.89305 * 6 5 4 31 31 H 1.08997 * 109.50327 * 178.60397 * 8 7 6 32 32 H 1.08996 * 109.50529 * 298.72925 * 8 7 6 33 33 H 0.97011 * 119.99933 * 180.02562 * 14 13 11 34 34 H 1.09004 * 113.86855 * 205.80849 * 19 2 1 35 35 H 1.09000 * 113.86747 * 337.51127 * 19 2 1 36 36 H 1.09004 * 113.86639 * 221.66498 * 21 20 19 37 37 H 1.08995 * 113.98250 * 89.96826 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1277 1.4085 0.0000 4 7 1.1440 2.3579 0.5374 5 6 1.2678 3.6701 -0.1140 6 6 0.1888 4.6093 0.4314 7 8 0.3145 4.6968 1.8534 8 6 0.1973 3.4370 2.5202 9 6 1.2763 2.4859 1.9959 10 1 2.2616 2.8845 2.2378 11 6 1.1094 1.1327 2.6380 12 1 0.4070 0.4228 2.2267 13 6 1.8532 0.8010 3.7504 14 7 1.7080 -0.3801 4.3104 15 14 3.0686 2.0286 4.4614 16 1 2.3853 2.8705 5.4761 17 1 4.1932 1.2987 5.0999 18 1 3.5932 2.8925 3.3736 19 6 2.1547 -0.9408 1.0474 20 8 2.1472 -1.9296 -0.0018 21 6 2.1521 -0.9397 -1.0501 22 1 -0.3635 0.6725 -0.7770 23 1 -0.3633 -1.0092 -0.1940 24 1 -0.3634 0.3365 0.9710 25 1 2.3876 1.6928 -1.0197 26 1 3.0235 1.4230 0.6208 27 1 1.1402 3.5555 -1.1905 28 1 2.2529 4.0879 0.0934 29 1 0.3131 5.5997 -0.0065 30 1 -0.7965 4.2190 0.1764 31 1 0.3278 3.5796 3.5929 32 1 -0.7877 3.0127 2.3261 33 1 2.2311 -0.6133 5.0933 34 1 3.1539 -0.6441 1.3665 35 1 1.4918 -1.1761 1.8800 36 1 1.4868 -1.1742 -1.8812 37 1 3.1494 -0.6414 -1.3731 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260435035.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:30 Heat of formation + Delta-G solvation = -36.391708 kcal Electronic energy + Delta-G solvation = -19288.949098 eV Core-core repulsion = 16454.431115 eV Total energy + Delta-G solvation = -2834.517983 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.03323 -38.59334 -35.26510 -32.91885 -31.33640 -30.50396 -27.57655 -25.89800 -25.69018 -24.72619 -22.86940 -22.24698 -19.34342 -17.94362 -17.26205 -15.80720 -15.60425 -15.19106 -15.08159 -14.87571 -14.49593 -14.06918 -13.63667 -13.21148 -13.07300 -12.87574 -12.35351 -11.95211 -11.52933 -11.34614 -11.13476 -11.06642 -10.86682 -10.78775 -10.21338 -10.15843 -9.86648 -9.64050 -9.41788 -9.14682 -8.92991 -8.71178 -8.54947 -7.37737 -6.21042 -4.23295 3.18177 3.26949 3.30570 4.27628 4.44190 4.55324 4.68986 5.06838 5.12376 5.50104 5.55224 5.67181 5.69480 5.82957 5.95512 5.99853 6.05876 6.09065 6.22379 6.28727 6.35586 6.47075 6.51856 6.59756 6.72693 6.82562 6.96562 6.99607 7.09111 7.20483 7.30929 7.36094 7.84447 7.86952 7.96792 8.51910 8.90516 9.40040 10.87463 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.017872 B = 0.014335 C = 0.009181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.326872 B = 1952.840311 C = 3049.056455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.093 4.093 3 C 0.083 3.917 4 N -0.524 5.524 5 C 0.015 3.985 6 C 0.070 3.930 7 O -0.406 6.406 8 C 0.068 3.932 9 C 0.141 3.859 10 H 0.020 0.980 11 C -0.514 4.514 12 H 0.106 0.894 13 C 0.080 3.920 14 N -0.886 5.886 15 Si 0.859 3.141 16 H -0.274 1.274 17 H -0.287 1.287 18 H -0.265 1.265 19 C 0.065 3.935 20 O -0.400 6.400 21 C 0.029 3.971 22 H 0.046 0.954 23 H 0.034 0.966 24 H 0.091 0.909 25 H 0.049 0.951 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.027 0.973 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.267 0.733 34 H 0.063 0.937 35 H 0.122 0.878 36 H 0.077 0.923 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.272 4.767 -8.275 9.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.094 4.094 3 C -0.045 4.045 4 N -0.249 5.249 5 C -0.114 4.114 6 C -0.007 4.007 7 O -0.325 6.325 8 C -0.008 4.008 9 C 0.034 3.966 10 H 0.038 0.962 11 C -0.552 4.552 12 H 0.123 0.877 13 C -0.124 4.124 14 N -0.523 5.523 15 Si 0.687 3.313 16 H -0.200 1.200 17 H -0.213 1.213 18 H -0.191 1.191 19 C -0.010 4.010 20 O -0.320 6.320 21 C -0.049 4.049 22 H 0.065 0.935 23 H 0.053 0.947 24 H 0.110 0.890 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.045 0.955 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.140 0.860 36 H 0.095 0.905 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.645 4.352 -8.098 9.216 hybrid contribution 1.684 0.961 0.528 2.009 sum 1.039 5.313 -7.571 9.307 Atomic orbital electron populations 1.21493 0.92035 0.98896 1.04037 1.23399 0.97992 0.93895 0.94126 1.21871 0.93390 0.92238 0.97009 1.62428 1.49849 1.06109 1.06531 1.22794 0.97869 0.91909 0.98815 1.22456 0.97744 0.98284 0.82220 1.87870 1.93901 1.32471 1.18254 1.23187 0.99786 0.81904 0.95937 1.20638 0.94434 0.97020 0.84490 0.96213 1.21271 1.24237 0.98386 1.11301 0.87661 1.24968 0.96279 0.94739 0.96384 1.69823 1.41002 1.19679 1.21791 0.87120 0.82173 0.82135 0.79835 1.19972 1.21331 1.19052 1.24372 1.00297 0.84349 0.92018 1.89579 1.95710 1.28837 1.17858 1.24089 0.99160 0.88802 0.92834 0.93451 0.94679 0.89048 0.93227 0.94106 0.91177 0.95462 0.90043 0.93030 0.89875 0.92951 0.92307 0.91857 0.85986 0.90490 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.01 7.86 37.15 0.29 -1.72 16 2 C -0.09 -1.75 0.75 -153.43 -0.11 -1.87 16 3 C 0.08 1.54 4.81 -3.82 -0.02 1.52 16 4 N -0.52 -10.09 3.18 -227.72 -0.72 -10.81 16 5 C 0.01 0.25 5.50 -3.71 -0.02 0.23 16 6 C 0.07 1.13 7.01 37.21 0.26 1.39 16 7 O -0.41 -8.00 10.83 -35.23 -0.38 -8.38 16 8 C 0.07 1.43 6.27 37.21 0.23 1.66 16 9 C 0.14 3.10 1.41 -68.75 -0.10 3.00 16 10 H 0.02 0.48 4.85 -51.93 -0.25 0.23 16 11 C -0.51 -12.39 5.27 -34.44 -0.18 -12.57 16 12 H 0.11 2.69 3.54 -52.48 -0.19 2.50 16 13 C 0.08 2.04 5.10 -17.82 -0.09 1.95 16 14 N -0.89 -23.88 13.30 55.43 0.74 -23.14 16 15 Si 0.86 20.11 27.45 -169.99 -4.67 15.44 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.27 -6.19 5.95 56.52 0.34 -5.86 16 19 C 0.07 1.40 6.29 37.60 0.24 1.64 16 20 O -0.40 -8.36 12.39 -35.23 -0.44 -8.80 16 21 C 0.03 0.49 8.27 37.61 0.31 0.80 16 22 H 0.05 0.81 8.09 -51.93 -0.42 0.39 16 23 H 0.03 0.63 8.05 -51.93 -0.42 0.22 16 24 H 0.09 1.93 4.94 -51.93 -0.26 1.68 16 25 H 0.05 0.80 7.56 -51.93 -0.39 0.41 16 26 H 0.04 0.83 7.20 -51.93 -0.37 0.46 16 27 H 0.07 1.00 8.01 -51.93 -0.42 0.58 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.77 7.98 -51.93 -0.41 1.35 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.06 1.41 7.77 -51.93 -0.40 1.00 16 35 H 0.12 3.01 5.85 -51.93 -0.30 2.70 16 36 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 37 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 LS Contribution 276.74 15.07 4.17 4.17 Total: -1.00 -26.49 276.74 -6.06 -32.55 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.57 Total: 2.92 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 0.81 Total: -3.96 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.01 Total: -33.95 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.82 Total: -17.17 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.67 Total: 15.44 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -26.49 -6.06 -32.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260435035.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.838 kcal (2) G-P(sol) polarization free energy of solvation -26.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds