Wall clock time and date at job start Mon Mar 30 2020 03:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 112.99584 * 2 1 4 4 N 1.46899 * 109.47270 * 22.82993 * 3 2 1 5 5 C 1.47015 * 111.00107 * 213.37477 * 4 3 2 6 6 C 1.53096 * 109.29024 * 177.62896 * 5 4 3 7 7 O 1.43019 * 109.25898 * 56.83119 * 6 5 4 8 8 C 1.43018 * 113.73576 * 301.32682 * 7 6 5 9 9 C 1.47015 * 111.03282 * 89.71571 * 4 3 2 10 10 H 1.09004 * 109.47010 * 62.41970 * 9 4 3 11 11 C 1.50701 * 109.54687 * 302.33200 * 9 4 3 12 12 H 1.08003 * 119.99539 * 324.06922 * 11 9 4 13 13 C 1.37868 * 120.00297 * 144.07088 * 11 9 4 14 14 N 1.31514 * 120.00099 * 180.02562 * 13 11 9 15 15 Si 1.86806 * 120.00005 * 359.97438 * 13 11 9 16 16 H 1.48501 * 109.47078 * 90.00326 * 15 13 11 17 17 H 1.48497 * 109.47118 * 209.99956 * 15 13 11 18 18 H 1.48493 * 109.47224 * 330.00314 * 15 13 11 19 19 C 1.54029 * 113.93102 * 131.92989 * 2 1 3 20 20 O 1.44173 * 85.52052 * 91.66433 * 19 2 1 21 21 C 1.44176 * 93.33986 * 24.19376 * 20 19 2 22 22 H 1.09001 * 109.47942 * 49.12035 * 1 2 3 23 23 H 1.09005 * 109.46915 * 169.11885 * 1 2 3 24 24 H 1.09006 * 109.47277 * 289.11539 * 1 2 3 25 25 H 1.09001 * 109.46884 * 262.83238 * 3 2 1 26 26 H 1.08997 * 109.47049 * 142.83727 * 3 2 1 27 27 H 1.09006 * 109.50442 * 57.67820 * 5 4 3 28 28 H 1.08997 * 109.50548 * 297.58754 * 5 4 3 29 29 H 1.09005 * 109.50663 * 176.76240 * 6 5 4 30 30 H 1.09002 * 109.51237 * 296.89305 * 6 5 4 31 31 H 1.08997 * 109.50327 * 178.60397 * 8 7 6 32 32 H 1.08996 * 109.50529 * 298.72925 * 8 7 6 33 33 H 0.97011 * 119.99933 * 180.02562 * 14 13 11 34 34 H 1.09004 * 113.86855 * 205.80849 * 19 2 1 35 35 H 1.09000 * 113.86747 * 337.51127 * 19 2 1 36 36 H 1.09004 * 113.86639 * 221.66498 * 21 20 19 37 37 H 1.08995 * 113.98250 * 89.96826 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1277 1.4085 0.0000 4 7 1.1440 2.3579 0.5374 5 6 1.2678 3.6701 -0.1140 6 6 0.1888 4.6093 0.4314 7 8 0.3145 4.6968 1.8534 8 6 0.1973 3.4370 2.5202 9 6 1.2763 2.4859 1.9959 10 1 2.2616 2.8845 2.2378 11 6 1.1094 1.1327 2.6380 12 1 0.4070 0.4228 2.2267 13 6 1.8532 0.8010 3.7504 14 7 1.7080 -0.3801 4.3104 15 14 3.0686 2.0286 4.4614 16 1 2.3853 2.8705 5.4761 17 1 4.1932 1.2987 5.0999 18 1 3.5932 2.8925 3.3736 19 6 2.1547 -0.9408 1.0474 20 8 2.1472 -1.9296 -0.0018 21 6 2.1521 -0.9397 -1.0501 22 1 -0.3635 0.6725 -0.7770 23 1 -0.3633 -1.0092 -0.1940 24 1 -0.3634 0.3365 0.9710 25 1 2.3876 1.6928 -1.0197 26 1 3.0235 1.4230 0.6208 27 1 1.1402 3.5555 -1.1905 28 1 2.2529 4.0879 0.0934 29 1 0.3131 5.5997 -0.0065 30 1 -0.7965 4.2190 0.1764 31 1 0.3278 3.5796 3.5929 32 1 -0.7877 3.0127 2.3261 33 1 2.2311 -0.6133 5.0933 34 1 3.1539 -0.6441 1.3665 35 1 1.4918 -1.1761 1.8800 36 1 1.4868 -1.1742 -1.8812 37 1 3.1494 -0.6414 -1.3731 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260435035.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:30 Heat of formation + Delta-G solvation = -55.238898 kcal Electronic energy + Delta-G solvation = -19289.766374 eV Core-core repulsion = 16454.431115 eV Total energy + Delta-G solvation = -2835.335259 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.59159 -40.11841 -36.81768 -34.77113 -32.86536 -32.16828 -29.09405 -27.48954 -27.21015 -26.43936 -24.40080 -23.79002 -20.93289 -19.50997 -19.10474 -17.35667 -17.13052 -16.72508 -16.65114 -16.39190 -16.19734 -15.66965 -15.26274 -14.80710 -14.63938 -14.56967 -13.98927 -13.45007 -13.11197 -12.99132 -12.80433 -12.62360 -12.49963 -12.33451 -11.78438 -11.71941 -11.65155 -11.18997 -11.04217 -10.79085 -10.77698 -10.34539 -10.23651 -8.94943 -8.19010 -6.21257 1.28401 1.35859 1.38060 2.33825 2.88263 3.07413 3.18889 3.28178 3.54855 4.12415 4.18266 4.36499 4.38692 4.46311 4.48038 4.51573 4.54367 4.63609 4.77108 4.80738 4.87005 4.92951 5.01009 5.05755 5.16929 5.29422 5.33090 5.43661 5.50980 5.51547 5.56167 5.73051 6.14598 6.31210 6.40770 6.72521 6.95352 7.43854 8.91552 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.017872 B = 0.014335 C = 0.009181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.326872 B = 1952.840311 C = 3049.056455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.090 4.090 3 C 0.084 3.916 4 N -0.527 5.527 5 C 0.014 3.986 6 C 0.063 3.937 7 O -0.417 6.417 8 C 0.076 3.924 9 C 0.145 3.855 10 H 0.001 0.999 11 C -0.495 4.495 12 H 0.090 0.910 13 C 0.041 3.959 14 N -0.923 5.923 15 Si 0.900 3.100 16 H -0.273 1.273 17 H -0.293 1.293 18 H -0.262 1.262 19 C 0.064 3.936 20 O -0.421 6.421 21 C 0.039 3.961 22 H 0.068 0.932 23 H 0.034 0.966 24 H 0.062 0.938 25 H 0.086 0.914 26 H 0.017 0.983 27 H 0.105 0.895 28 H 0.022 0.978 29 H 0.117 0.883 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.263 0.737 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.360 6.355 -10.912 12.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.091 4.091 3 C -0.044 4.044 4 N -0.252 5.252 5 C -0.115 4.115 6 C -0.013 4.013 7 O -0.337 6.337 8 C -0.001 4.001 9 C 0.037 3.963 10 H 0.018 0.982 11 C -0.533 4.533 12 H 0.108 0.892 13 C -0.159 4.159 14 N -0.563 5.563 15 Si 0.728 3.272 16 H -0.198 1.198 17 H -0.219 1.219 18 H -0.188 1.188 19 C -0.012 4.012 20 O -0.341 6.341 21 C -0.038 4.038 22 H 0.086 0.914 23 H 0.053 0.947 24 H 0.080 0.920 25 H 0.104 0.896 26 H 0.036 0.964 27 H 0.124 0.876 28 H 0.040 0.960 29 H 0.134 0.866 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.737 5.965 -10.760 12.325 hybrid contribution 1.669 0.481 1.227 2.126 sum 0.931 6.445 -9.533 11.545 Atomic orbital electron populations 1.21349 0.91859 0.99226 1.02977 1.23353 0.98017 0.94111 0.93593 1.21904 0.92187 0.91899 0.98449 1.62330 1.50039 1.07988 1.04828 1.22943 0.97771 0.90209 1.00536 1.22788 0.98035 1.00309 0.80181 1.87853 1.93969 1.31338 1.20528 1.22905 0.99115 0.82443 0.95637 1.20475 0.93749 0.95588 0.86477 0.98176 1.21403 1.22560 0.98957 1.10359 0.89235 1.25411 0.97767 0.95525 0.97157 1.69935 1.42521 1.21261 1.22581 0.86470 0.80753 0.80731 0.79279 1.19838 1.21917 1.18753 1.24078 0.99021 0.86085 0.92012 1.89553 1.95823 1.29959 1.18761 1.24315 1.00850 0.86428 0.92217 0.91350 0.94720 0.91961 0.89605 0.96412 0.87644 0.96008 0.86556 0.92207 0.90987 0.93032 0.92771 0.93278 0.89633 0.87702 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.47 7.86 71.98 0.57 -2.91 16 2 C -0.09 -3.23 0.75 -51.48 -0.04 -3.27 16 3 C 0.08 2.90 4.81 86.31 0.42 3.31 16 4 N -0.53 -19.03 3.18 -874.38 -2.78 -21.82 16 5 C 0.01 0.40 5.50 86.31 0.47 0.87 16 6 C 0.06 1.79 7.01 72.01 0.50 2.30 16 7 O -0.42 -15.50 10.83 -148.98 -1.61 -17.11 16 8 C 0.08 3.11 6.27 72.01 0.45 3.56 16 9 C 0.15 6.26 1.41 44.18 0.06 6.32 16 10 H 0.00 0.03 4.85 -2.38 -0.01 0.02 16 11 C -0.49 -24.26 5.27 25.60 0.13 -24.12 16 12 H 0.09 4.71 3.54 -2.91 -0.01 4.70 16 13 C 0.04 2.15 5.10 84.65 0.43 2.59 16 14 N -0.92 -51.83 13.30 21.44 0.29 -51.54 16 15 Si 0.90 42.17 27.45 68.60 1.88 44.05 16 16 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 18 H -0.26 -12.07 5.95 99.48 0.59 -11.48 16 19 C 0.06 2.81 6.29 72.27 0.45 3.27 16 20 O -0.42 -17.27 12.39 -148.98 -1.85 -19.12 16 21 C 0.04 1.19 8.27 72.27 0.60 1.79 16 22 H 0.07 2.13 8.09 -2.39 -0.02 2.11 16 23 H 0.03 1.21 8.05 -2.38 -0.02 1.19 16 24 H 0.06 2.62 4.94 -2.38 -0.01 2.61 16 25 H 0.09 2.36 7.56 -2.39 -0.02 2.34 16 26 H 0.02 0.70 7.20 -2.39 -0.02 0.68 16 27 H 0.11 2.39 8.01 -2.38 -0.02 2.37 16 28 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.12 2.52 8.14 -2.38 -0.02 2.50 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.07 3.05 7.98 -2.39 -0.02 3.03 16 32 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.26 14.30 8.31 -92.70 -0.77 13.53 16 34 H 0.05 2.26 7.77 -2.39 -0.02 2.24 16 35 H 0.09 4.42 5.85 -2.39 -0.01 4.40 16 36 H 0.10 2.69 8.10 -2.38 -0.02 2.67 16 37 H 0.09 2.32 8.10 -2.39 -0.02 2.30 16 Total: -1.00 -58.26 276.74 0.92 -57.34 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.94 Total: 14.48 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 4.05 Total: -6.29 kcal Atomic # 7 Polarization: -70.86 SS G_CDS: -2.50 Total: -73.36 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -3.46 Total: -36.23 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.88 Total: 44.05 kcal Total: -58.26 0.92 -57.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260435035.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.098 kcal (2) G-P(sol) polarization free energy of solvation -58.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds