Wall clock time and date at job start Mon Mar 30 2020 03:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86791 * 120.00186 * 2 1 4 4 H 1.48499 * 109.47453 * 264.77670 * 3 2 1 5 5 H 1.48499 * 109.47353 * 24.77835 * 3 2 1 6 6 H 1.48501 * 109.47363 * 144.77641 * 3 2 1 7 7 C 1.37880 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00043 * 6.05793 * 7 2 1 9 9 C 1.50694 * 120.00422 * 186.06220 * 7 2 1 10 10 O 1.42902 * 110.35175 * 61.55499 * 9 7 2 11 11 C 1.54591 * 110.31145 * 183.70232 * 9 7 2 12 12 C 1.54938 * 102.92240 * 140.87162 * 11 9 7 13 13 N 1.48532 * 103.22600 * 322.58415 * 12 11 9 14 14 C 1.46904 * 110.99666 * 159.72138 * 13 12 11 15 15 C 1.53180 * 109.54142 * 177.16043 * 14 13 12 16 16 C 1.53087 * 109.16171 * 183.15301 * 15 14 13 17 17 O 1.42900 * 109.41850 * 57.60907 * 16 15 14 18 18 C 1.42903 * 114.09471 * 298.83750 * 17 16 15 19 19 C 1.53095 * 109.41179 * 61.16250 * 18 17 16 20 20 C 1.47899 * 105.82195 * 39.20767 * 13 12 11 21 21 H 0.97003 * 120.00395 * 359.97438 * 1 2 3 22 22 H 0.96694 * 113.99886 * 57.86732 * 10 9 7 23 23 H 1.09002 * 110.72447 * 259.22566 * 11 9 7 24 24 H 1.08991 * 110.72641 * 22.33344 * 11 9 7 25 25 H 1.09003 * 110.66879 * 204.14595 * 12 11 9 26 26 H 1.09007 * 110.66962 * 81.02165 * 12 11 9 27 27 H 1.09004 * 109.54588 * 297.42118 * 14 13 12 28 28 H 1.09004 * 109.52020 * 303.05557 * 15 14 13 29 29 H 1.09000 * 109.52556 * 63.24395 * 15 14 13 30 30 H 1.09003 * 109.48191 * 297.61904 * 16 15 14 31 31 H 1.09011 * 109.48055 * 177.58902 * 16 15 14 32 32 H 1.08991 * 109.48583 * 301.17401 * 18 17 16 33 33 H 1.09006 * 109.49014 * 181.14268 * 18 17 16 34 34 H 1.08999 * 109.52072 * 182.48253 * 19 18 17 35 35 H 1.08997 * 109.52465 * 62.29114 * 19 18 17 36 36 H 1.09009 * 109.91607 * 94.01850 * 20 13 12 37 37 H 1.08998 * 109.91715 * 215.31577 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.6070 1.9826 -1.3942 5 1 1.3958 2.6820 0.5868 6 1 3.4871 1.4745 0.8075 7 6 2.0045 -1.1941 -0.0005 8 1 1.4690 -2.1268 -0.0997 9 6 3.5051 -1.1979 0.1373 10 8 3.8908 -0.6246 1.3882 11 6 4.0514 -2.6390 0.0162 12 6 5.3514 -2.4489 -0.8051 13 7 4.9871 -1.3861 -1.7767 14 6 6.1870 -0.7322 -2.3160 15 6 5.7769 0.3067 -3.3643 16 6 7.0357 0.9265 -3.9767 17 8 7.8441 -0.1049 -4.5464 18 6 8.2965 -1.0793 -3.6040 19 6 7.0884 -1.7797 -2.9767 20 6 4.1507 -0.4239 -1.0271 21 1 -0.4851 0.8400 0.0004 22 1 3.5139 -1.0715 2.1584 23 1 4.2739 -3.0511 1.0005 24 1 3.3452 -3.2758 -0.5163 25 1 5.6168 -3.3700 -1.3240 26 1 6.1678 -2.1192 -0.1624 27 1 6.7295 -0.2419 -1.5076 28 1 5.1914 -0.1766 -4.1464 29 1 5.1805 1.0864 -2.8906 30 1 7.6002 1.4442 -3.2011 31 1 6.7505 1.6358 -4.7537 32 1 8.8775 -0.5879 -2.8236 33 1 8.9197 -1.8151 -4.1124 34 1 7.4298 -2.4922 -2.2257 35 1 6.5293 -2.3050 -3.7509 36 1 4.7715 0.3831 -0.6376 37 1 3.3762 -0.0190 -1.6785 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260468824.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:53 Heat of formation + Delta-G solvation = -86.145263 kcal Electronic energy + Delta-G solvation = -18663.812844 eV Core-core repulsion = 15827.137385 eV Total energy + Delta-G solvation = -2836.675459 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.73418 -38.16576 -35.33709 -32.60009 -32.29855 -31.19828 -28.92022 -28.35039 -24.85819 -23.76400 -23.00834 -21.15287 -19.85727 -19.44367 -17.08453 -16.53036 -15.97348 -15.60291 -15.09073 -14.76321 -14.48219 -14.12805 -13.87554 -13.27718 -13.01168 -12.64541 -12.35024 -12.25728 -12.04081 -11.58900 -11.37774 -11.24482 -11.17791 -10.77151 -10.55644 -10.30673 -10.15531 -10.07282 -9.97934 -9.57820 -9.00139 -8.68208 -8.38056 -7.91593 -6.16705 -4.25119 3.29621 3.40367 3.59608 3.85036 4.29668 4.44673 4.74480 4.95546 5.03134 5.12790 5.20841 5.29390 5.31924 5.44701 5.49851 5.63610 5.66102 5.71163 5.77983 5.92013 5.94256 6.07079 6.12074 6.17933 6.29963 6.40519 6.53545 6.65749 6.88677 7.11401 7.16264 7.40917 7.58408 7.62117 8.26253 8.81709 8.97833 9.47812 10.94232 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.030535 B = 0.008148 C = 0.007067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.757504 B = 3435.715197 C = 3961.336636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.085 3.915 3 Si 0.869 3.131 4 H -0.283 1.283 5 H -0.298 1.298 6 H -0.232 1.232 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.211 3.789 10 O -0.582 6.582 11 C -0.134 4.134 12 C 0.038 3.962 13 N -0.505 5.505 14 C 0.075 3.925 15 C -0.150 4.150 16 C 0.064 3.936 17 O -0.385 6.385 18 C 0.063 3.937 19 C -0.148 4.148 20 C 0.047 3.953 21 H 0.265 0.735 22 H 0.364 0.636 23 H 0.060 0.940 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.046 0.954 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.034 0.966 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.496 -1.193 -4.229 15.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.119 4.119 3 Si 0.697 3.303 4 H -0.210 1.210 5 H -0.225 1.225 6 H -0.155 1.155 7 C -0.581 4.581 8 H 0.095 0.905 9 C 0.171 3.829 10 O -0.389 6.389 11 C -0.173 4.173 12 C -0.090 4.090 13 N -0.230 5.230 14 C -0.034 4.034 15 C -0.188 4.188 16 C -0.013 4.013 17 O -0.304 6.304 18 C -0.014 4.014 19 C -0.186 4.186 20 C -0.081 4.081 21 H 0.075 0.925 22 H 0.211 0.789 23 H 0.079 0.921 24 H 0.096 0.904 25 H 0.089 0.911 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.113 0.887 32 H 0.065 0.935 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.052 0.948 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.433 -0.904 -5.259 15.388 hybrid contribution 0.250 0.899 1.305 1.605 sum 14.683 -0.005 -3.954 15.206 Atomic orbital electron populations 1.69938 1.06581 1.27406 1.48695 1.24989 0.94580 0.99541 0.92814 0.87124 0.81968 0.82614 0.78613 1.20951 1.22510 1.15492 1.21354 0.89095 0.94975 1.52709 0.90501 1.19850 0.94076 0.87605 0.81381 1.86465 1.75394 1.60702 1.16297 1.23058 0.95742 0.99778 0.98697 1.23155 0.97415 0.95138 0.93273 1.64864 1.15007 1.10825 1.32275 1.21811 0.91317 0.94322 0.95968 1.22250 0.98232 0.98928 0.99395 1.22591 0.90870 0.89689 0.98194 1.87896 1.69000 1.38183 1.35282 1.22568 0.95297 0.91102 0.92420 1.22266 0.96778 0.98473 1.01042 1.23235 0.96000 0.93853 0.94984 0.92505 0.78897 0.92145 0.90448 0.91077 0.94607 0.94473 0.89857 0.90862 0.93487 0.88738 0.93548 0.88896 0.91006 0.90022 0.94783 0.89254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.96 55.43 0.77 -26.13 16 2 C 0.09 2.43 5.39 -17.82 -0.10 2.33 16 3 Si 0.87 21.82 23.84 -169.99 -4.05 17.77 16 4 H -0.28 -6.92 6.95 56.52 0.39 -6.52 16 5 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.23 -5.75 5.42 56.52 0.31 -5.44 16 7 C -0.54 -14.97 8.66 -34.44 -0.30 -15.26 16 8 H 0.08 2.29 7.82 -52.48 -0.41 1.88 16 9 C 0.21 4.89 0.84 -90.42 -0.08 4.81 16 10 O -0.58 -13.19 10.45 -35.23 -0.37 -13.56 16 11 C -0.13 -2.65 6.34 -24.87 -0.16 -2.81 16 12 C 0.04 0.66 5.33 -1.90 -0.01 0.65 16 13 N -0.51 -9.61 5.11 -222.26 -1.14 -10.74 16 14 C 0.07 1.20 1.73 -67.53 -0.12 1.08 16 15 C -0.15 -2.29 5.35 -26.59 -0.14 -2.43 16 16 C 0.06 0.81 6.84 37.20 0.25 1.07 16 17 O -0.38 -5.23 10.77 -35.23 -0.38 -5.61 16 18 C 0.06 0.73 6.84 37.21 0.25 0.99 16 19 C -0.15 -1.94 5.13 -26.59 -0.14 -2.07 16 20 C 0.05 1.04 3.06 -2.75 -0.01 1.03 16 21 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 22 H 0.36 7.19 9.07 45.56 0.41 7.61 16 23 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 24 H 0.08 1.59 7.70 -51.93 -0.40 1.19 16 25 H 0.07 1.09 7.73 -51.93 -0.40 0.69 16 26 H 0.04 0.60 8.02 -51.92 -0.42 0.19 16 27 H 0.04 0.61 7.95 -51.93 -0.41 0.20 16 28 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.07 1.19 7.48 -51.93 -0.39 0.80 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.87 7.08 -51.93 -0.37 0.50 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.03 0.77 6.62 -51.92 -0.34 0.42 16 37 H 0.09 2.18 5.79 -51.93 -0.30 1.88 16 LS Contribution 279.62 15.07 4.21 4.21 Total: -1.00 -30.91 279.62 -6.71 -37.62 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -5.22 Total: 7.06 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -0.53 Total: -10.62 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: -0.36 Total: -36.87 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.75 Total: -19.16 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.05 Total: 17.77 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.91 -6.71 -37.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260468824.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.525 kcal (2) G-P(sol) polarization free energy of solvation -30.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds