Wall clock time and date at job start Mon Mar 30 2020 03:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86791 * 120.00186 * 2 1 4 4 H 1.48499 * 109.47453 * 264.77670 * 3 2 1 5 5 H 1.48499 * 109.47353 * 24.77835 * 3 2 1 6 6 H 1.48501 * 109.47363 * 144.77641 * 3 2 1 7 7 C 1.37880 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00043 * 6.05793 * 7 2 1 9 9 C 1.50694 * 120.00422 * 186.06220 * 7 2 1 10 10 O 1.42902 * 110.35175 * 61.55499 * 9 7 2 11 11 C 1.54591 * 110.31145 * 183.70232 * 9 7 2 12 12 C 1.54938 * 102.92240 * 140.87162 * 11 9 7 13 13 N 1.48532 * 103.22600 * 322.58415 * 12 11 9 14 14 C 1.46904 * 110.99666 * 159.72138 * 13 12 11 15 15 C 1.53180 * 109.54142 * 177.16043 * 14 13 12 16 16 C 1.53087 * 109.16171 * 183.15301 * 15 14 13 17 17 O 1.42900 * 109.41850 * 57.60907 * 16 15 14 18 18 C 1.42903 * 114.09471 * 298.83750 * 17 16 15 19 19 C 1.53095 * 109.41179 * 61.16250 * 18 17 16 20 20 C 1.47899 * 105.82195 * 39.20767 * 13 12 11 21 21 H 0.97003 * 120.00395 * 359.97438 * 1 2 3 22 22 H 0.96694 * 113.99886 * 57.86732 * 10 9 7 23 23 H 1.09002 * 110.72447 * 259.22566 * 11 9 7 24 24 H 1.08991 * 110.72641 * 22.33344 * 11 9 7 25 25 H 1.09003 * 110.66879 * 204.14595 * 12 11 9 26 26 H 1.09007 * 110.66962 * 81.02165 * 12 11 9 27 27 H 1.09004 * 109.54588 * 297.42118 * 14 13 12 28 28 H 1.09004 * 109.52020 * 303.05557 * 15 14 13 29 29 H 1.09000 * 109.52556 * 63.24395 * 15 14 13 30 30 H 1.09003 * 109.48191 * 297.61904 * 16 15 14 31 31 H 1.09011 * 109.48055 * 177.58902 * 16 15 14 32 32 H 1.08991 * 109.48583 * 301.17401 * 18 17 16 33 33 H 1.09006 * 109.49014 * 181.14268 * 18 17 16 34 34 H 1.08999 * 109.52072 * 182.48253 * 19 18 17 35 35 H 1.08997 * 109.52465 * 62.29114 * 19 18 17 36 36 H 1.09009 * 109.91607 * 94.01850 * 20 13 12 37 37 H 1.08998 * 109.91715 * 215.31577 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.6070 1.9826 -1.3942 5 1 1.3958 2.6820 0.5868 6 1 3.4871 1.4745 0.8075 7 6 2.0045 -1.1941 -0.0005 8 1 1.4690 -2.1268 -0.0997 9 6 3.5051 -1.1979 0.1373 10 8 3.8908 -0.6246 1.3882 11 6 4.0514 -2.6390 0.0162 12 6 5.3514 -2.4489 -0.8051 13 7 4.9871 -1.3861 -1.7767 14 6 6.1870 -0.7322 -2.3160 15 6 5.7769 0.3067 -3.3643 16 6 7.0357 0.9265 -3.9767 17 8 7.8441 -0.1049 -4.5464 18 6 8.2965 -1.0793 -3.6040 19 6 7.0884 -1.7797 -2.9767 20 6 4.1507 -0.4239 -1.0271 21 1 -0.4851 0.8400 0.0004 22 1 3.5139 -1.0715 2.1584 23 1 4.2739 -3.0511 1.0005 24 1 3.3452 -3.2758 -0.5163 25 1 5.6168 -3.3700 -1.3240 26 1 6.1678 -2.1192 -0.1624 27 1 6.7295 -0.2419 -1.5076 28 1 5.1914 -0.1766 -4.1464 29 1 5.1805 1.0864 -2.8906 30 1 7.6002 1.4442 -3.2011 31 1 6.7505 1.6358 -4.7537 32 1 8.8775 -0.5879 -2.8236 33 1 8.9197 -1.8151 -4.1124 34 1 7.4298 -2.4922 -2.2257 35 1 6.5293 -2.3050 -3.7509 36 1 4.7715 0.3831 -0.6376 37 1 3.3762 -0.0190 -1.6785 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260468824.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:53 Heat of formation + Delta-G solvation = -111.922455 kcal Electronic energy + Delta-G solvation = -18664.930627 eV Core-core repulsion = 15827.137385 eV Total energy + Delta-G solvation = -2837.793242 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.02055 -39.54752 -36.89862 -34.52253 -33.91449 -32.23254 -30.42699 -30.07623 -26.60823 -24.99644 -24.26349 -22.58386 -21.26248 -21.02247 -19.11172 -17.76729 -17.25678 -16.93536 -16.77354 -16.05023 -15.91665 -15.57668 -15.19296 -14.93482 -14.69968 -14.28132 -13.91308 -13.72194 -13.36716 -13.31795 -12.87480 -12.72607 -12.34533 -12.28655 -12.15434 -12.00604 -11.89147 -11.38815 -11.29993 -11.00211 -10.81950 -10.60668 -10.24937 -9.39319 -8.39098 -6.50100 1.28887 1.34933 1.56556 2.33230 2.83736 2.95538 3.01774 3.54894 3.70275 3.84826 3.98065 4.07178 4.14241 4.21346 4.28673 4.33926 4.36133 4.50503 4.55168 4.69186 4.71221 4.75335 4.83776 4.88364 5.02112 5.06931 5.12036 5.25405 5.31000 5.35561 5.57585 5.89719 6.07647 6.17105 6.22794 6.60454 7.14930 7.31017 8.75558 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.030535 B = 0.008148 C = 0.007067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.757504 B = 3435.715197 C = 3961.336636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.034 3.966 3 Si 0.930 3.070 4 H -0.276 1.276 5 H -0.301 1.301 6 H -0.223 1.223 7 C -0.544 4.544 8 H 0.039 0.961 9 C 0.205 3.795 10 O -0.585 6.585 11 C -0.132 4.132 12 C 0.046 3.954 13 N -0.518 5.518 14 C 0.071 3.929 15 C -0.151 4.151 16 C 0.069 3.931 17 O -0.398 6.398 18 C 0.062 3.938 19 C -0.140 4.140 20 C 0.056 3.944 21 H 0.267 0.733 22 H 0.376 0.624 23 H 0.081 0.919 24 H 0.061 0.939 25 H 0.098 0.902 26 H 0.050 0.950 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.109 0.891 32 H 0.059 0.941 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.032 0.968 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.567 -1.187 -4.382 18.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.165 4.165 3 Si 0.755 3.245 4 H -0.202 1.202 5 H -0.228 1.228 6 H -0.145 1.145 7 C -0.581 4.581 8 H 0.057 0.943 9 C 0.165 3.835 10 O -0.392 6.392 11 C -0.171 4.171 12 C -0.081 4.081 13 N -0.242 5.242 14 C -0.038 4.038 15 C -0.189 4.189 16 C -0.008 4.008 17 O -0.317 6.317 18 C -0.015 4.015 19 C -0.178 4.178 20 C -0.072 4.072 21 H 0.076 0.924 22 H 0.225 0.775 23 H 0.100 0.900 24 H 0.079 0.921 25 H 0.116 0.884 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.127 0.873 32 H 0.078 0.922 33 H 0.135 0.865 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.050 0.950 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.526 -0.917 -5.410 18.365 hybrid contribution -0.745 0.793 1.366 1.746 sum 16.781 -0.123 -4.044 17.261 Atomic orbital electron populations 1.70061 1.08230 1.28242 1.50978 1.25746 0.95139 1.02908 0.92746 0.86178 0.80792 0.78575 0.78940 1.20239 1.22822 1.14507 1.21646 0.91776 0.93320 1.51401 0.94259 1.19818 0.91423 0.90311 0.81950 1.86410 1.75135 1.61192 1.16493 1.22985 0.96617 0.97140 1.00313 1.23181 0.96195 0.95713 0.93005 1.64837 1.16648 1.10618 1.32140 1.21958 0.90461 0.95294 0.96086 1.22254 0.99305 0.98446 0.98893 1.22601 0.89672 0.89659 0.98907 1.87890 1.68901 1.38649 1.36272 1.22743 0.94739 0.91231 0.92759 1.22235 0.96685 0.97906 1.00998 1.22904 0.95786 0.94381 0.94155 0.92445 0.77524 0.90016 0.92054 0.88394 0.93212 0.94385 0.91266 0.92481 0.92220 0.87329 0.92232 0.86509 0.89380 0.90996 0.94955 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.36 13.96 21.45 0.30 -58.06 16 2 C 0.03 2.00 5.39 84.66 0.46 2.46 16 3 Si 0.93 45.75 23.84 68.60 1.64 47.39 16 4 H -0.28 -13.16 6.95 99.48 0.69 -12.47 16 5 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 6 H -0.22 -10.53 5.42 99.48 0.54 -9.99 16 7 C -0.54 -30.60 8.66 25.60 0.22 -30.38 16 8 H 0.04 2.45 7.82 -2.91 -0.02 2.42 16 9 C 0.21 9.37 0.84 -10.66 -0.01 9.36 16 10 O -0.58 -25.46 10.45 -148.98 -1.56 -27.02 16 11 C -0.13 -5.02 6.34 31.80 0.20 -4.82 16 12 C 0.05 1.47 5.33 86.65 0.46 1.93 16 13 N -0.52 -18.80 5.11 -857.11 -4.38 -23.18 16 14 C 0.07 2.08 1.73 45.03 0.08 2.16 16 15 C -0.15 -4.40 5.35 30.68 0.16 -4.24 16 16 C 0.07 1.58 6.84 72.01 0.49 2.07 16 17 O -0.40 -9.62 10.77 -148.98 -1.60 -11.22 16 18 C 0.06 1.20 6.84 72.01 0.49 1.69 16 19 C -0.14 -3.22 5.13 30.69 0.16 -3.06 16 20 C 0.06 2.43 3.06 86.45 0.26 2.70 16 21 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 22 H 0.38 14.25 9.07 -74.06 -0.67 13.58 16 23 H 0.08 2.71 8.08 -2.39 -0.02 2.69 16 24 H 0.06 2.50 7.70 -2.39 -0.02 2.48 16 25 H 0.10 2.62 7.73 -2.39 -0.02 2.61 16 26 H 0.05 1.47 8.02 -2.38 -0.02 1.45 16 27 H 0.04 1.14 7.95 -2.38 -0.02 1.12 16 28 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.06 1.82 7.48 -2.39 -0.02 1.80 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.09 1.74 7.08 -2.39 -0.02 1.72 16 35 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.03 1.41 6.62 -2.38 -0.02 1.39 16 37 H 0.06 2.94 5.79 -2.39 -0.01 2.93 16 Total: -1.00 -67.22 279.62 -2.43 -69.65 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.20 Total: 22.55 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: 2.98 Total: -20.10 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -4.08 Total: -81.24 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -3.16 Total: -38.24 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.64 Total: 47.39 kcal Total: -67.22 -2.43 -69.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260468824.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.276 kcal (2) G-P(sol) polarization free energy of solvation -67.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds