Wall clock time and date at job start Mon Mar 30 2020 03:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00402 * 2 1 4 4 H 1.48507 * 109.47306 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46810 * 299.99687 * 3 2 1 6 6 H 1.48494 * 109.47232 * 59.99838 * 3 2 1 7 7 C 1.37885 * 119.99441 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00088 * 359.97438 * 7 2 1 10 10 O 1.42900 * 110.62812 * 56.89778 * 9 7 2 11 11 C 1.55145 * 110.85959 * 293.69195 * 9 7 2 12 12 C 1.54904 * 101.65324 * 205.89730 * 11 9 7 13 13 N 1.47842 * 104.79984 * 37.06202 * 12 11 9 14 14 C 1.46899 * 111.00379 * 213.63822 * 13 12 11 15 15 C 1.53201 * 109.54018 * 303.82405 * 14 13 12 16 16 C 1.53094 * 109.15031 * 183.15699 * 15 14 13 17 17 O 1.42897 * 109.42427 * 57.60349 * 16 15 14 18 18 C 1.42910 * 114.09866 * 298.83485 * 17 16 15 19 19 C 1.53087 * 109.41156 * 61.16026 * 18 17 16 20 20 C 1.47437 * 108.56879 * 335.91026 * 13 12 11 21 21 H 0.97002 * 119.99646 * 359.97438 * 1 2 3 22 22 H 0.96702 * 114.00213 * 303.10099 * 10 9 7 23 23 H 1.09000 * 110.98473 * 323.98386 * 11 9 7 24 24 H 1.08999 * 110.99196 * 87.76169 * 11 9 7 25 25 H 1.09004 * 110.36863 * 278.23389 * 12 11 9 26 26 H 1.08994 * 110.37520 * 155.89757 * 12 11 9 27 27 H 1.08995 * 109.54311 * 64.08280 * 14 13 12 28 28 H 1.09004 * 109.53705 * 63.24941 * 15 14 13 29 29 H 1.08996 * 109.52044 * 303.05138 * 15 14 13 30 30 H 1.09002 * 109.47681 * 297.61499 * 16 15 14 31 31 H 1.09002 * 109.47842 * 177.59649 * 16 15 14 32 32 H 1.09000 * 109.47702 * 181.14218 * 18 17 16 33 33 H 1.08993 * 109.47856 * 301.16892 * 18 17 16 34 34 H 1.08997 * 109.52912 * 62.29487 * 19 18 17 35 35 H 1.08998 * 109.52609 * 182.48617 * 19 18 17 36 36 H 1.09003 * 109.89171 * 120.39039 * 20 13 12 37 37 H 1.09001 * 109.88973 * 241.42032 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1943 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 0.3662 -2.5696 -1.1205 11 6 0.4707 -2.6865 1.3273 12 6 0.3700 -4.2298 1.4160 13 7 1.6598 -4.7233 0.8881 14 6 1.4848 -5.9958 0.1754 15 6 0.8253 -7.0181 1.1067 16 6 0.7190 -8.3624 0.3819 17 8 2.0210 -8.7862 -0.0269 18 6 2.6669 -7.8924 -0.9359 19 6 2.8517 -6.5293 -0.2642 20 6 2.2280 -3.6936 -0.0011 21 1 -0.4850 0.8401 0.0004 22 1 -0.2687 -1.8417 -1.1667 23 1 1.0318 -2.2828 2.1701 24 1 -0.5186 -2.2330 1.2663 25 1 -0.4548 -4.5921 0.8023 26 1 0.2393 -4.5426 2.4518 27 1 0.8554 -5.8396 -0.7006 28 1 -0.1715 -6.6720 1.3804 29 1 1.4306 -7.1358 2.0054 30 1 0.0803 -8.2532 -0.4947 31 1 0.2894 -9.1049 1.0544 32 1 3.6407 -8.2964 -1.2125 33 1 2.0538 -7.7773 -1.8297 34 1 3.4979 -6.6369 0.6069 35 1 3.3041 -5.8334 -0.9707 36 1 3.2014 -3.3764 0.3733 37 1 2.3308 -4.0912 -1.0108 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260468832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:54 Heat of formation + Delta-G solvation = -98.939556 kcal Electronic energy + Delta-G solvation = -18476.667103 eV Core-core repulsion = 15639.436841 eV Total energy + Delta-G solvation = -2837.230261 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.59852 -37.89191 -35.01897 -32.29036 -32.07946 -31.13045 -28.49103 -28.10636 -24.97475 -23.58293 -23.04465 -20.61648 -19.70304 -19.20087 -17.13042 -16.41862 -15.88413 -15.16098 -14.93376 -14.70362 -14.40250 -13.97851 -13.66442 -13.43264 -12.84136 -12.28543 -12.01279 -11.90092 -11.71218 -11.29212 -11.20632 -11.12275 -10.99991 -10.63792 -10.43925 -10.39793 -10.17880 -10.12819 -9.90287 -9.47941 -9.26526 -8.63076 -8.10534 -7.63774 -6.22942 -4.29793 3.20602 3.29283 3.33824 3.92616 4.29178 4.49818 4.87822 5.04416 5.07857 5.12889 5.32174 5.40336 5.58295 5.64540 5.71274 5.75629 5.85425 5.94020 6.08131 6.11943 6.17166 6.27580 6.32168 6.43123 6.51126 6.60019 6.94180 7.06721 7.23651 7.41095 7.47053 7.66858 7.78747 7.83897 8.13533 8.72033 9.38237 9.50823 10.84435 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.049866 B = 0.005946 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.368087 B = 4708.028766 C = 4932.320211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.530 4.530 8 H 0.063 0.937 9 C 0.236 3.764 10 O -0.593 6.593 11 C -0.132 4.132 12 C 0.043 3.957 13 N -0.525 5.525 14 C 0.080 3.920 15 C -0.148 4.148 16 C 0.063 3.937 17 O -0.387 6.387 18 C 0.063 3.937 19 C -0.148 4.148 20 C 0.058 3.942 21 H 0.267 0.733 22 H 0.383 0.617 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.036 0.964 26 H 0.060 0.940 27 H 0.040 0.960 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.873 -11.356 0.567 11.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.568 4.568 8 H 0.081 0.919 9 C 0.195 3.805 10 O -0.403 6.403 11 C -0.170 4.170 12 C -0.085 4.085 13 N -0.249 5.249 14 C -0.029 4.029 15 C -0.186 4.186 16 C -0.014 4.014 17 O -0.305 6.305 18 C -0.014 4.014 19 C -0.186 4.186 20 C -0.069 4.069 21 H 0.077 0.923 22 H 0.235 0.765 23 H 0.082 0.918 24 H 0.090 0.910 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.498 -12.043 0.921 12.171 hybrid contribution -0.643 1.983 -0.587 2.166 sum 0.855 -10.060 0.334 10.102 Atomic orbital electron populations 1.69601 1.06005 1.27357 1.51108 1.25019 0.94992 0.99525 0.93753 0.86395 0.80160 0.82952 0.77645 1.19627 1.20876 1.20861 1.21654 0.93631 0.90654 1.50906 0.91907 1.19731 0.86241 0.91835 0.82680 1.86068 1.51572 1.53311 1.49382 1.23166 1.01812 0.91349 1.00712 1.23022 0.89840 0.97456 0.98143 1.63733 1.24296 1.02402 1.34498 1.21737 0.95427 0.90744 0.94963 1.22275 1.01681 0.94810 0.99837 1.22570 0.84567 0.96032 0.98221 1.87880 1.30826 1.47241 1.64596 1.22585 0.97550 0.89849 0.91418 1.22266 0.97995 0.96528 1.01769 1.22838 0.98591 0.91329 0.94130 0.92345 0.76499 0.91832 0.90954 0.94613 0.92126 0.94172 0.91006 0.90396 0.93470 0.89033 0.88953 0.93428 0.90372 0.90741 0.90409 0.93517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.08 10.69 55.43 0.59 -23.49 16 2 C 0.07 1.82 5.28 -17.82 -0.09 1.72 16 3 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -14.24 8.22 -34.44 -0.28 -14.52 16 8 H 0.06 1.68 7.53 -52.49 -0.40 1.28 16 9 C 0.24 5.87 0.85 -89.95 -0.08 5.79 16 10 O -0.59 -15.54 13.08 -35.23 -0.46 -16.00 16 11 C -0.13 -3.06 5.67 -24.59 -0.14 -3.20 16 12 C 0.04 0.85 5.40 -2.30 -0.01 0.84 16 13 N -0.53 -10.20 5.03 -223.07 -1.12 -11.33 16 14 C 0.08 1.34 1.57 -67.52 -0.11 1.23 16 15 C -0.15 -2.09 5.17 -26.58 -0.14 -2.23 16 16 C 0.06 0.78 6.84 37.21 0.25 1.04 16 17 O -0.39 -5.36 10.77 -35.23 -0.38 -5.74 16 18 C 0.06 0.80 6.84 37.20 0.25 1.06 16 19 C -0.15 -2.17 5.29 -26.59 -0.14 -2.31 16 20 C 0.06 1.28 5.56 -2.84 -0.02 1.26 16 21 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 22 H 0.38 10.27 6.98 45.56 0.32 10.59 16 23 H 0.06 1.52 8.05 -51.93 -0.42 1.10 16 24 H 0.07 1.77 7.76 -51.93 -0.40 1.37 16 25 H 0.04 0.71 7.44 -51.93 -0.39 0.32 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.99 6.99 -51.93 -0.36 0.63 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.07 1.11 6.81 -51.93 -0.35 0.76 16 36 H 0.08 1.71 7.63 -51.93 -0.40 1.31 16 37 H 0.05 1.02 6.50 -51.93 -0.34 0.68 16 LS Contribution 286.27 15.07 4.31 4.31 Total: -1.00 -27.66 286.27 -7.82 -35.48 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -5.25 Total: 10.42 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -0.50 Total: -9.32 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: -0.53 Total: -34.81 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.84 Total: -21.74 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.66 -7.82 -35.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260468832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.456 kcal (2) G-P(sol) polarization free energy of solvation -27.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds