Wall clock time and date at job start Mon Mar 30 2020 03:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00402 * 2 1 4 4 H 1.48507 * 109.47306 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46810 * 299.99687 * 3 2 1 6 6 H 1.48494 * 109.47232 * 59.99838 * 3 2 1 7 7 C 1.37885 * 119.99441 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00088 * 359.97438 * 7 2 1 10 10 O 1.42900 * 110.62812 * 56.89778 * 9 7 2 11 11 C 1.55145 * 110.85959 * 293.69195 * 9 7 2 12 12 C 1.54904 * 101.65324 * 205.89730 * 11 9 7 13 13 N 1.47842 * 104.79984 * 37.06202 * 12 11 9 14 14 C 1.46899 * 111.00379 * 213.63822 * 13 12 11 15 15 C 1.53201 * 109.54018 * 303.82405 * 14 13 12 16 16 C 1.53094 * 109.15031 * 183.15699 * 15 14 13 17 17 O 1.42897 * 109.42427 * 57.60349 * 16 15 14 18 18 C 1.42910 * 114.09866 * 298.83485 * 17 16 15 19 19 C 1.53087 * 109.41156 * 61.16026 * 18 17 16 20 20 C 1.47437 * 108.56879 * 335.91026 * 13 12 11 21 21 H 0.97002 * 119.99646 * 359.97438 * 1 2 3 22 22 H 0.96702 * 114.00213 * 303.10099 * 10 9 7 23 23 H 1.09000 * 110.98473 * 323.98386 * 11 9 7 24 24 H 1.08999 * 110.99196 * 87.76169 * 11 9 7 25 25 H 1.09004 * 110.36863 * 278.23389 * 12 11 9 26 26 H 1.08994 * 110.37520 * 155.89757 * 12 11 9 27 27 H 1.08995 * 109.54311 * 64.08280 * 14 13 12 28 28 H 1.09004 * 109.53705 * 63.24941 * 15 14 13 29 29 H 1.08996 * 109.52044 * 303.05138 * 15 14 13 30 30 H 1.09002 * 109.47681 * 297.61499 * 16 15 14 31 31 H 1.09002 * 109.47842 * 177.59649 * 16 15 14 32 32 H 1.09000 * 109.47702 * 181.14218 * 18 17 16 33 33 H 1.08993 * 109.47856 * 301.16892 * 18 17 16 34 34 H 1.08997 * 109.52912 * 62.29487 * 19 18 17 35 35 H 1.08998 * 109.52609 * 182.48617 * 19 18 17 36 36 H 1.09003 * 109.89171 * 120.39039 * 20 13 12 37 37 H 1.09001 * 109.88973 * 241.42032 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1943 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 0.3662 -2.5696 -1.1205 11 6 0.4707 -2.6865 1.3273 12 6 0.3700 -4.2298 1.4160 13 7 1.6598 -4.7233 0.8881 14 6 1.4848 -5.9958 0.1754 15 6 0.8253 -7.0181 1.1067 16 6 0.7190 -8.3624 0.3819 17 8 2.0210 -8.7862 -0.0269 18 6 2.6669 -7.8924 -0.9359 19 6 2.8517 -6.5293 -0.2642 20 6 2.2280 -3.6936 -0.0011 21 1 -0.4850 0.8401 0.0004 22 1 -0.2687 -1.8417 -1.1667 23 1 1.0318 -2.2828 2.1701 24 1 -0.5186 -2.2330 1.2663 25 1 -0.4548 -4.5921 0.8023 26 1 0.2393 -4.5426 2.4518 27 1 0.8554 -5.8396 -0.7006 28 1 -0.1715 -6.6720 1.3804 29 1 1.4306 -7.1358 2.0054 30 1 0.0803 -8.2532 -0.4947 31 1 0.2894 -9.1049 1.0544 32 1 3.6407 -8.2964 -1.2125 33 1 2.0538 -7.7773 -1.8297 34 1 3.4979 -6.6369 0.6069 35 1 3.3041 -5.8334 -0.9707 36 1 3.2014 -3.3764 0.3733 37 1 2.3308 -4.0912 -1.0108 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260468832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:54 Heat of formation + Delta-G solvation = -119.539244 kcal Electronic energy + Delta-G solvation = -18477.560372 eV Core-core repulsion = 15639.436841 eV Total energy + Delta-G solvation = -2838.123531 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.93965 -39.38640 -36.73024 -34.14963 -33.77814 -32.22403 -30.12817 -29.88389 -26.76606 -24.86670 -24.30913 -22.11945 -21.36568 -20.76152 -19.15118 -17.68686 -16.97027 -16.91035 -16.63487 -16.16249 -15.75559 -15.64879 -15.02221 -14.94447 -14.37871 -13.86174 -13.69081 -13.38071 -13.21859 -13.19260 -12.82018 -12.57834 -12.47771 -12.29715 -12.20214 -12.10988 -11.86997 -11.39549 -11.26241 -11.17715 -10.66367 -10.56015 -10.10593 -9.25321 -8.24590 -6.39359 1.38218 1.41510 1.52399 2.37038 2.90845 2.99644 3.07065 3.70724 3.87052 3.90323 4.05054 4.19051 4.25470 4.32207 4.37072 4.43107 4.51972 4.59721 4.60269 4.76278 4.78235 4.82674 4.89746 5.06989 5.09499 5.18445 5.21492 5.36946 5.46190 5.51992 5.78521 5.93761 6.16970 6.24253 6.26820 6.65353 7.31550 7.41088 8.81238 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.049866 B = 0.005946 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.368087 B = 4708.028766 C = 4932.320211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.028 3.972 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.557 4.557 8 H 0.055 0.945 9 C 0.219 3.781 10 O -0.600 6.600 11 C -0.126 4.126 12 C 0.054 3.946 13 N -0.523 5.523 14 C 0.076 3.924 15 C -0.142 4.142 16 C 0.064 3.936 17 O -0.396 6.396 18 C 0.066 3.934 19 C -0.143 4.143 20 C 0.068 3.932 21 H 0.270 0.730 22 H 0.377 0.623 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.036 0.964 26 H 0.084 0.916 27 H 0.023 0.977 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.179 -12.393 0.860 12.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.172 4.172 3 Si 0.788 3.212 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.595 4.595 8 H 0.074 0.926 9 C 0.179 3.821 10 O -0.409 6.409 11 C -0.165 4.165 12 C -0.074 4.074 13 N -0.247 5.247 14 C -0.033 4.033 15 C -0.180 4.180 16 C -0.013 4.013 17 O -0.315 6.315 18 C -0.011 4.011 19 C -0.182 4.182 20 C -0.060 4.060 21 H 0.079 0.921 22 H 0.228 0.772 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.102 0.898 27 H 0.041 0.959 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.804 -13.099 1.216 13.278 hybrid contribution -0.758 2.310 -0.688 2.526 sum 1.046 -10.789 0.528 10.853 Atomic orbital electron populations 1.69678 1.06908 1.28181 1.50909 1.25718 0.95843 1.02395 0.93264 0.85447 0.78921 0.79145 0.77728 1.19495 1.20468 1.20311 1.21911 0.93562 0.92112 1.51907 0.92630 1.19992 0.86709 0.92509 0.82920 1.86061 1.51645 1.52961 1.50278 1.22982 1.00203 0.93876 0.99404 1.22944 0.90064 0.94798 0.99578 1.63786 1.23932 1.02776 1.34233 1.21887 0.96672 0.89984 0.94773 1.22239 1.01442 0.95029 0.99264 1.22686 0.84278 0.95526 0.98803 1.87878 1.31433 1.47452 1.64777 1.22647 0.98839 0.88527 0.91080 1.22235 0.96614 0.97661 1.01643 1.22657 0.97809 0.91030 0.94481 0.92072 0.77217 0.93016 0.92781 0.94614 0.89756 0.95911 0.90624 0.90575 0.92882 0.86543 0.86756 0.92913 0.90670 0.91442 0.90862 0.93833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.38 10.69 21.45 0.23 -49.15 16 2 C 0.03 1.47 5.28 84.66 0.45 1.92 16 3 Si 0.96 42.40 29.54 68.60 2.03 44.42 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 6 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.56 -30.29 8.22 25.60 0.21 -30.08 16 8 H 0.06 3.02 7.53 -2.91 -0.02 3.00 16 9 C 0.22 11.05 0.85 -10.36 -0.01 11.04 16 10 O -0.60 -31.98 13.08 -148.98 -1.95 -33.93 16 11 C -0.13 -5.90 5.67 31.98 0.18 -5.72 16 12 C 0.05 2.07 5.40 86.77 0.47 2.54 16 13 N -0.52 -19.93 5.03 -859.65 -4.32 -24.26 16 14 C 0.08 2.42 1.57 45.04 0.07 2.49 16 15 C -0.14 -3.70 5.17 30.69 0.16 -3.54 16 16 C 0.06 1.41 6.84 72.01 0.49 1.90 16 17 O -0.40 -9.91 10.77 -148.98 -1.60 -11.51 16 18 C 0.07 1.53 6.84 72.01 0.49 2.02 16 19 C -0.14 -4.02 5.29 30.68 0.16 -3.86 16 20 C 0.07 2.99 5.56 86.65 0.48 3.47 16 21 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 22 H 0.38 20.68 6.98 -74.06 -0.52 20.17 16 23 H 0.05 2.50 8.05 -2.39 -0.02 2.48 16 24 H 0.05 2.69 7.76 -2.39 -0.02 2.67 16 25 H 0.04 1.38 7.44 -2.38 -0.02 1.37 16 26 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 27 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.08 1.91 6.99 -2.38 -0.02 1.90 16 29 H 0.08 2.03 8.14 -2.39 -0.02 2.02 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.07 1.97 6.81 -2.39 -0.02 1.95 16 36 H 0.07 3.25 7.63 -2.39 -0.02 3.23 16 37 H 0.04 1.91 6.50 -2.39 -0.02 1.89 16 Total: -1.00 -58.14 286.27 -1.93 -60.07 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: 0.53 Total: 32.17 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: 3.16 Total: -17.81 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: -4.09 Total: -73.41 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -3.55 Total: -45.44 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -58.14 -1.93 -60.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260468832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.468 kcal (2) G-P(sol) polarization free energy of solvation -58.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds