Wall clock time and date at job start Mon Mar 30 2020 03:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.62921 * 2 1 4 4 H 1.08997 * 110.72342 * 177.69925 * 3 2 1 5 5 C 1.54934 * 110.66792 * 300.80276 * 3 2 1 6 6 C 1.54597 * 102.92083 * 155.85045 * 5 3 2 7 7 C 1.53987 * 105.14034 * 338.03871 * 6 5 3 8 8 N 1.47907 * 107.06007 * 358.77791 * 7 6 5 9 9 O 1.43756 * 109.62913 * 239.60850 * 2 1 3 10 10 C 1.44790 * 104.81149 * 264.58523 * 9 2 1 11 11 C 1.54909 * 101.72364 * 323.89509 * 10 9 2 12 12 H 1.09001 * 110.70329 * 276.99620 * 11 10 9 13 13 C 1.53001 * 110.69383 * 153.95980 * 11 10 9 14 14 C 1.50704 * 109.47022 * 175.00447 * 13 11 10 15 15 H 1.07999 * 119.99815 * 359.97438 * 14 13 11 16 16 C 1.37872 * 120.00083 * 180.02562 * 14 13 11 17 17 N 1.31515 * 119.99919 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00303 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47235 * 59.99362 * 18 16 14 20 20 H 1.48492 * 109.47306 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46783 * 300.00011 * 18 16 14 22 22 O 1.43368 * 109.50529 * 120.31986 * 2 1 3 23 23 H 1.09003 * 109.47162 * 59.99706 * 1 2 3 24 24 H 1.09004 * 109.47737 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47319 * 300.00192 * 1 2 3 26 26 H 1.08997 * 110.72246 * 274.20498 * 5 3 2 27 27 H 1.08997 * 110.72656 * 37.48843 * 5 3 2 28 28 H 1.08999 * 110.31150 * 96.95653 * 6 5 3 29 29 H 1.08997 * 110.30780 * 219.12473 * 6 5 3 30 30 H 1.08997 * 109.92021 * 239.42491 * 7 6 5 31 31 H 1.09003 * 109.92014 * 118.12750 * 7 6 5 32 32 H 1.00900 * 110.99568 * 264.81950 * 8 7 6 33 33 H 1.08995 * 110.97697 * 82.00864 * 10 9 2 34 34 H 1.09000 * 110.97390 * 205.75262 * 10 9 2 35 35 H 1.08996 * 109.47402 * 295.00192 * 13 11 10 36 36 H 1.08997 * 109.46825 * 55.00533 * 13 11 10 37 37 H 0.96997 * 119.99925 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4410 0.0000 4 1 3.1330 1.4621 0.0409 5 6 1.5285 2.2055 -1.2451 6 6 1.5809 3.6821 -0.7904 7 6 1.5553 3.6303 0.7484 8 7 1.4619 2.2052 1.1330 9 8 2.0129 -0.6850 -1.1680 10 6 2.2617 -2.0410 -0.7254 11 6 2.7837 -1.8113 0.7149 12 1 3.8473 -1.5729 0.7058 13 6 2.5137 -3.0371 1.5897 14 6 3.1391 -2.8339 2.9458 15 1 3.6757 -1.9220 3.1618 16 6 3.0270 -3.8128 3.9103 17 7 2.3739 -4.9236 3.6470 18 14 3.8027 -3.5614 5.5909 19 1 3.2158 -2.3572 6.2318 20 1 3.5406 -4.7510 6.4400 21 1 5.2680 -3.3756 5.4369 22 8 2.0087 -0.6822 1.1666 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3635 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 2.1865 2.0411 -2.0984 27 1 0.5062 1.9111 -1.4827 28 1 2.5008 4.1526 -1.1379 29 1 0.7129 4.2244 -1.1651 30 1 0.6884 4.1738 1.1239 31 1 2.4713 4.0639 1.1498 32 1 0.5030 1.9367 1.2955 33 1 1.3409 -2.6243 -0.7184 34 1 3.0202 -2.5204 -1.3442 35 1 1.4382 -3.1734 1.7024 36 1 2.9447 -3.9210 1.1196 37 1 2.2947 -5.6120 4.3257 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260482931.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:54 Heat of formation + Delta-G solvation = -91.189287 kcal Electronic energy + Delta-G solvation = -18314.545637 eV Core-core repulsion = 15477.651453 eV Total energy + Delta-G solvation = -2836.894184 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.34977 -38.15304 -34.57384 -33.27807 -31.90447 -29.91586 -29.63538 -27.72355 -26.51824 -23.33711 -22.98223 -21.00321 -20.38019 -19.72689 -17.27109 -16.48702 -16.13826 -15.43966 -15.17646 -14.67733 -14.39293 -14.03964 -13.71321 -13.40965 -12.96493 -12.50834 -12.44040 -11.93810 -11.81798 -11.68665 -11.57940 -11.44211 -11.30196 -11.11678 -11.00663 -10.56500 -10.46888 -10.45418 -9.67487 -9.56284 -9.10329 -8.79956 -8.49637 -8.35350 -5.98360 -3.98947 3.38690 3.41732 3.46579 3.71973 4.29170 4.48754 4.50063 4.69457 4.80187 5.01806 5.15068 5.19276 5.35727 5.38235 5.42697 5.44233 5.55351 5.67470 5.75519 5.80458 5.85526 5.96042 6.00690 6.02340 6.15761 6.16455 6.41717 6.47341 6.78647 6.82878 7.39420 7.45939 7.61807 7.88936 7.99414 8.39973 9.05066 9.64265 11.13277 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031386 B = 0.006311 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.901161 B = 4435.529105 C = 5002.434818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.255 3.745 3 C 0.078 3.922 4 H 0.095 0.905 5 C -0.149 4.149 6 C -0.153 4.153 7 C 0.041 3.959 8 N -0.657 5.657 9 O -0.382 6.382 10 C 0.016 3.984 11 C 0.061 3.939 12 H 0.072 0.928 13 C 0.025 3.975 14 C -0.510 4.510 15 H 0.059 0.941 16 C 0.056 3.944 17 N -0.900 5.900 18 Si 0.895 3.105 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.277 1.277 22 O -0.346 6.346 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.338 0.662 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.027 0.973 36 H 0.033 0.967 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.240 12.862 -10.097 16.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.176 3.824 3 C -0.033 4.033 4 H 0.113 0.887 5 C -0.189 4.189 6 C -0.192 4.192 7 C -0.089 4.089 8 N -0.288 5.288 9 O -0.303 6.303 10 C -0.060 4.060 11 C 0.004 3.996 12 H 0.090 0.910 13 C -0.012 4.012 14 C -0.548 4.548 15 H 0.077 0.923 16 C -0.144 4.144 17 N -0.539 5.539 18 Si 0.723 3.277 19 H -0.201 1.201 20 H -0.214 1.214 21 H -0.203 1.203 22 O -0.267 6.267 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.157 0.843 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.729 12.811 -9.539 16.204 hybrid contribution -0.313 0.004 0.175 0.358 sum -3.042 12.815 -9.364 16.161 Atomic orbital electron populations 1.22455 0.95151 1.03709 1.02128 1.23124 0.92248 0.90235 0.76755 1.22914 1.00749 0.91054 0.88551 0.88668 1.23179 1.02157 0.94398 0.99127 1.22821 1.02096 0.96984 0.97267 1.22774 1.02130 0.90567 0.93439 1.62771 1.24550 1.02299 1.39167 1.89101 1.86202 1.22726 1.32229 1.24585 1.01265 0.83608 0.96550 1.24104 0.95064 0.88610 0.91801 0.91011 1.19250 0.98272 0.89446 0.94240 1.21086 1.33906 1.02695 0.97118 0.92323 1.24984 0.95471 0.95172 0.98811 1.69942 1.42200 1.07258 1.34522 0.86605 0.79744 0.77480 0.83904 1.20128 1.21383 1.20258 1.89102 1.69632 1.41523 1.26416 0.91299 0.91214 0.90827 0.90537 0.90935 0.91320 0.91615 0.91709 0.90633 0.84257 0.90971 0.88095 0.95505 0.94931 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.62 8.56 37.16 0.32 -2.30 16 2 C 0.25 4.39 0.95 -26.73 -0.03 4.37 16 3 C 0.08 1.18 3.09 -65.79 -0.20 0.98 16 4 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 5 C -0.15 -1.81 6.14 -24.87 -0.15 -1.96 16 6 C -0.15 -1.55 6.93 -25.38 -0.18 -1.73 16 7 C 0.04 0.46 7.51 -2.75 -0.02 0.44 16 8 N -0.66 -9.63 7.31 -103.18 -0.75 -10.39 16 9 O -0.38 -6.61 10.73 -59.04 -0.63 -7.24 16 10 C 0.02 0.28 7.36 38.16 0.28 0.56 16 11 C 0.06 1.31 3.58 -25.72 -0.09 1.22 16 12 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 13 C 0.02 0.64 4.73 -27.88 -0.13 0.51 16 14 C -0.51 -14.67 9.04 -34.44 -0.31 -14.98 16 15 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 18 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 O -0.35 -7.53 10.47 -59.04 -0.62 -8.15 16 23 H 0.07 0.86 6.15 -51.93 -0.32 0.54 16 24 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 25 H 0.07 1.03 6.22 -51.93 -0.32 0.71 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.07 0.84 5.87 -51.93 -0.30 0.54 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.34 4.71 6.26 -39.29 -0.25 4.46 16 33 H 0.07 1.24 8.04 -51.93 -0.42 0.82 16 34 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 294.17 15.07 4.43 4.43 Total: -1.00 -31.13 294.17 -8.27 -39.40 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.80 Total: 2.41 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -0.61 Total: -11.37 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: -0.02 Total: -36.66 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -1.25 Total: -15.39 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.13 -8.27 -39.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260482931.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.789 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds