Wall clock time and date at job start Mon Mar 30 2020 03:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.62921 * 2 1 4 4 H 1.08997 * 110.72342 * 177.69925 * 3 2 1 5 5 C 1.54934 * 110.66792 * 300.80276 * 3 2 1 6 6 C 1.54597 * 102.92083 * 155.85045 * 5 3 2 7 7 C 1.53987 * 105.14034 * 338.03871 * 6 5 3 8 8 N 1.47907 * 107.06007 * 358.77791 * 7 6 5 9 9 O 1.43756 * 109.62913 * 239.60850 * 2 1 3 10 10 C 1.44790 * 104.81149 * 264.58523 * 9 2 1 11 11 C 1.54909 * 101.72364 * 323.89509 * 10 9 2 12 12 H 1.09001 * 110.70329 * 276.99620 * 11 10 9 13 13 C 1.53001 * 110.69383 * 153.95980 * 11 10 9 14 14 C 1.50704 * 109.47022 * 175.00447 * 13 11 10 15 15 H 1.07999 * 119.99815 * 359.97438 * 14 13 11 16 16 C 1.37872 * 120.00083 * 180.02562 * 14 13 11 17 17 N 1.31515 * 119.99919 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00303 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47235 * 59.99362 * 18 16 14 20 20 H 1.48492 * 109.47306 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46783 * 300.00011 * 18 16 14 22 22 O 1.43368 * 109.50529 * 120.31986 * 2 1 3 23 23 H 1.09003 * 109.47162 * 59.99706 * 1 2 3 24 24 H 1.09004 * 109.47737 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47319 * 300.00192 * 1 2 3 26 26 H 1.08997 * 110.72246 * 274.20498 * 5 3 2 27 27 H 1.08997 * 110.72656 * 37.48843 * 5 3 2 28 28 H 1.08999 * 110.31150 * 96.95653 * 6 5 3 29 29 H 1.08997 * 110.30780 * 219.12473 * 6 5 3 30 30 H 1.08997 * 109.92021 * 239.42491 * 7 6 5 31 31 H 1.09003 * 109.92014 * 118.12750 * 7 6 5 32 32 H 1.00900 * 110.99568 * 264.81950 * 8 7 6 33 33 H 1.08995 * 110.97697 * 82.00864 * 10 9 2 34 34 H 1.09000 * 110.97390 * 205.75262 * 10 9 2 35 35 H 1.08996 * 109.47402 * 295.00192 * 13 11 10 36 36 H 1.08997 * 109.46825 * 55.00533 * 13 11 10 37 37 H 0.96997 * 119.99925 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4410 0.0000 4 1 3.1330 1.4621 0.0409 5 6 1.5285 2.2055 -1.2451 6 6 1.5809 3.6821 -0.7904 7 6 1.5553 3.6303 0.7484 8 7 1.4619 2.2052 1.1330 9 8 2.0129 -0.6850 -1.1680 10 6 2.2617 -2.0410 -0.7254 11 6 2.7837 -1.8113 0.7149 12 1 3.8473 -1.5729 0.7058 13 6 2.5137 -3.0371 1.5897 14 6 3.1391 -2.8339 2.9458 15 1 3.6757 -1.9220 3.1618 16 6 3.0270 -3.8128 3.9103 17 7 2.3739 -4.9236 3.6470 18 14 3.8027 -3.5614 5.5909 19 1 3.2158 -2.3572 6.2318 20 1 3.5406 -4.7510 6.4400 21 1 5.2680 -3.3756 5.4369 22 8 2.0087 -0.6822 1.1666 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3635 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 2.1865 2.0411 -2.0984 27 1 0.5062 1.9111 -1.4827 28 1 2.5008 4.1526 -1.1379 29 1 0.7129 4.2244 -1.1651 30 1 0.6884 4.1738 1.1239 31 1 2.4713 4.0639 1.1498 32 1 0.5030 1.9367 1.2955 33 1 1.3409 -2.6243 -0.7184 34 1 3.0202 -2.5204 -1.3442 35 1 1.4382 -3.1734 1.7024 36 1 2.9447 -3.9210 1.1196 37 1 2.2947 -5.6120 4.3257 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260482931.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:54 Heat of formation + Delta-G solvation = -113.194348 kcal Electronic energy + Delta-G solvation = -18315.499848 eV Core-core repulsion = 15477.651453 eV Total energy + Delta-G solvation = -2837.848395 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.74276 -39.28267 -36.18894 -35.21558 -33.48060 -31.32447 -30.88183 -28.82074 -28.30927 -25.16259 -24.25857 -22.45727 -21.65563 -20.94937 -18.72823 -18.29192 -17.79216 -16.79117 -16.54691 -16.32282 -15.75664 -15.23277 -14.97409 -14.84268 -14.30045 -14.08841 -13.85353 -13.64532 -13.46080 -13.13285 -13.03310 -12.79527 -12.56776 -12.48063 -12.39032 -12.27592 -12.08426 -11.68533 -11.39799 -11.19140 -10.98217 -10.58723 -10.37943 -9.55127 -8.21080 -6.29588 1.39263 1.42555 1.50518 2.38234 2.41477 2.93914 3.14370 3.39136 3.64633 3.73077 3.79768 3.96146 4.02689 4.05712 4.19249 4.30851 4.41965 4.51082 4.52737 4.69424 4.72958 4.79329 4.84350 4.94531 5.05603 5.06875 5.09130 5.16726 5.33400 5.34657 5.55669 5.75170 5.80770 6.18217 6.32023 6.43146 6.81197 7.37790 8.90451 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031386 B = 0.006311 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.901161 B = 4435.529105 C = 5002.434818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.245 3.755 3 C 0.077 3.923 4 H 0.073 0.927 5 C -0.142 4.142 6 C -0.143 4.143 7 C 0.039 3.961 8 N -0.680 5.680 9 O -0.379 6.379 10 C 0.027 3.973 11 C 0.063 3.937 12 H 0.066 0.934 13 C 0.032 3.968 14 C -0.533 4.533 15 H 0.050 0.950 16 C 0.005 3.995 17 N -0.930 5.930 18 Si 0.961 3.039 19 H -0.274 1.274 20 H -0.278 1.278 21 H -0.267 1.267 22 O -0.378 6.378 23 H 0.097 0.903 24 H 0.057 0.943 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.341 0.659 33 H 0.075 0.925 34 H 0.129 0.871 35 H 0.000 1.000 36 H 0.023 0.977 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.479 14.361 -10.683 18.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.167 3.833 3 C -0.034 4.034 4 H 0.091 0.909 5 C -0.181 4.181 6 C -0.182 4.182 7 C -0.091 4.091 8 N -0.312 5.312 9 O -0.299 6.299 10 C -0.050 4.050 11 C 0.006 3.994 12 H 0.084 0.916 13 C -0.005 4.005 14 C -0.570 4.570 15 H 0.068 0.932 16 C -0.193 4.193 17 N -0.570 5.570 18 Si 0.785 3.215 19 H -0.200 1.200 20 H -0.203 1.203 21 H -0.191 1.191 22 O -0.299 6.299 23 H 0.115 0.885 24 H 0.076 0.924 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.160 0.840 33 H 0.093 0.907 34 H 0.146 0.854 35 H 0.019 0.981 36 H 0.041 0.959 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.967 14.326 -10.141 17.802 hybrid contribution -0.255 -0.439 0.362 0.624 sum -3.222 13.887 -9.780 17.288 Atomic orbital electron populations 1.22447 0.93299 1.03468 1.03806 1.23514 0.93618 0.90773 0.75345 1.22815 0.99557 0.90289 0.90722 0.90920 1.23136 1.02359 0.95145 0.97477 1.22780 1.03582 0.95810 0.96065 1.22858 1.02888 0.88781 0.94547 1.62734 1.24784 1.04066 1.39626 1.89094 1.86310 1.22410 1.32073 1.24511 1.02038 0.84054 0.94353 1.23830 0.95039 0.87207 0.93350 0.91564 1.19057 0.96025 0.91302 0.94095 1.21419 1.34270 1.02499 0.98862 0.93212 1.25838 0.95873 0.94815 1.02751 1.70047 1.43117 1.07984 1.35888 0.85567 0.79218 0.77594 0.79083 1.19958 1.20330 1.19141 1.89050 1.69870 1.41815 1.29190 0.88490 0.92418 0.90274 0.90412 0.90062 0.90586 0.89355 0.89713 0.91077 0.83973 0.90664 0.85359 0.98144 0.95904 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.92 8.56 71.98 0.62 -4.30 16 2 C 0.25 8.31 0.95 30.59 0.03 8.34 16 3 C 0.08 2.27 3.09 45.26 0.14 2.41 16 4 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 5 C -0.14 -3.09 6.14 31.80 0.20 -2.90 16 6 C -0.14 -2.49 6.93 31.47 0.22 -2.27 16 7 C 0.04 0.79 7.51 86.44 0.65 1.44 16 8 N -0.68 -19.26 7.31 -480.36 -3.51 -22.77 16 9 O -0.38 -12.65 10.73 -126.22 -1.35 -14.00 16 10 C 0.03 0.91 7.36 72.63 0.53 1.45 16 11 C 0.06 2.75 3.58 31.25 0.11 2.86 16 12 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 13 C 0.03 1.71 4.73 29.85 0.14 1.85 16 14 C -0.53 -31.38 9.04 25.60 0.23 -31.15 16 15 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 16 C 0.01 0.30 5.46 84.65 0.46 0.76 16 17 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 18 Si 0.96 45.74 29.54 68.60 2.03 47.77 16 19 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 22 O -0.38 -16.74 10.47 -126.22 -1.32 -18.06 16 23 H 0.10 2.18 6.15 -2.39 -0.01 2.16 16 24 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 25 H 0.08 2.15 6.22 -2.39 -0.01 2.13 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.08 1.62 5.87 -2.39 -0.01 1.61 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.34 9.08 6.26 -89.69 -0.56 8.52 16 33 H 0.08 2.55 8.04 -2.39 -0.02 2.53 16 34 H 0.13 3.68 8.14 -2.39 -0.02 3.66 16 35 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 36 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -67.39 294.17 -0.06 -67.45 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.49 Total: 17.43 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: 3.33 Total: -21.50 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: -3.23 Total: -79.08 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -2.68 Total: -32.06 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -67.39 -0.06 -67.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260482931.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.748 kcal (2) G-P(sol) polarization free energy of solvation -67.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds