Wall clock time and date at job start Mon Mar 30 2020 03:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.62585 * 2 1 4 4 H 1.09002 * 110.59619 * 56.09399 * 3 2 1 5 5 C 1.54937 * 110.81186 * 292.98601 * 3 2 1 6 6 C 1.54588 * 102.92504 * 204.08622 * 5 3 2 7 7 C 1.53997 * 105.13912 * 21.95642 * 6 5 3 8 8 N 1.47904 * 107.05609 * 1.22600 * 7 6 5 9 9 O 1.43753 * 109.50806 * 239.68526 * 2 1 3 10 10 C 1.44788 * 104.80911 * 264.50539 * 9 2 1 11 11 C 1.54914 * 101.72226 * 323.89735 * 10 9 2 12 12 H 1.09006 * 110.69639 * 277.16610 * 11 10 9 13 13 C 1.53001 * 110.84067 * 154.02911 * 11 10 9 14 14 C 1.50698 * 109.46987 * 179.80447 * 13 11 10 15 15 H 1.08004 * 120.00176 * 359.97438 * 14 13 11 16 16 C 1.37877 * 119.99886 * 180.02562 * 14 13 11 17 17 N 1.31515 * 120.00302 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00065 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47393 * 89.99760 * 18 16 14 20 20 H 1.48500 * 109.47256 * 210.00045 * 18 16 14 21 21 H 1.48504 * 109.47294 * 329.99495 * 18 16 14 22 22 O 1.43363 * 109.62989 * 120.39043 * 2 1 3 23 23 H 1.09010 * 109.46981 * 60.00131 * 1 2 3 24 24 H 1.08997 * 109.46992 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47338 * 300.00543 * 1 2 3 26 26 H 1.08997 * 110.72368 * 322.44654 * 5 3 2 27 27 H 1.09004 * 110.72184 * 85.72453 * 5 3 2 28 28 H 1.09004 * 110.31172 * 263.04492 * 6 5 3 29 29 H 1.08997 * 110.31211 * 140.87328 * 6 5 3 30 30 H 1.08998 * 109.91643 * 241.87486 * 7 6 5 31 31 H 1.09003 * 109.91779 * 120.58069 * 7 6 5 32 32 H 1.00897 * 110.99915 * 214.15125 * 8 7 6 33 33 H 1.09001 * 110.97295 * 205.79268 * 10 9 2 34 34 H 1.08994 * 110.97983 * 82.00899 * 10 9 2 35 35 H 1.08994 * 109.47482 * 299.80873 * 13 11 10 36 36 H 1.09008 * 109.47109 * 59.80743 * 13 11 10 37 37 H 0.97002 * 120.00399 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 1 1.6366 1.9935 0.8468 5 6 1.6961 2.1496 -1.3333 6 6 2.7633 3.2646 -1.4210 7 6 3.9161 2.7900 -0.5169 8 7 3.5288 1.4681 0.0219 9 8 2.0101 -0.6839 -1.1697 10 6 2.2600 -2.0403 -0.7289 11 6 2.7855 -1.8117 0.7103 12 1 3.8485 -1.5702 0.6985 13 6 2.5210 -3.0371 1.5874 14 6 3.0477 -2.7837 2.9764 15 1 3.5239 -1.8429 3.2102 16 6 2.9227 -3.7533 3.9487 17 7 2.3433 -4.8991 3.6640 18 14 3.5749 -3.4390 5.6706 19 1 2.5079 -2.8224 6.4992 20 1 3.9962 -4.7247 6.2827 21 1 4.7392 -2.5200 5.5989 22 8 2.0117 -0.6831 1.1648 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.7890 1.4599 -2.1722 27 1 0.6942 2.5770 -1.2930 28 1 2.3573 4.2068 -1.0530 29 1 3.1099 3.3766 -2.4484 30 1 4.0616 3.4961 0.3006 31 1 4.8324 2.6993 -1.1003 32 1 3.8790 1.3433 0.9599 33 1 3.0176 -2.5188 -1.3495 34 1 1.3394 -2.6236 -0.7201 35 1 1.4486 -3.2257 1.6343 36 1 3.0243 -3.9048 1.1607 37 1 2.2549 -5.5811 4.3481 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260482933.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:56 Heat of formation + Delta-G solvation = -117.611415 kcal Electronic energy + Delta-G solvation = -18410.218639 eV Core-core repulsion = 15572.178705 eV Total energy + Delta-G solvation = -2838.039934 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.56691 -38.92065 -36.07530 -35.18012 -33.53240 -31.45588 -30.96050 -28.76736 -28.23326 -25.08672 -23.75374 -22.31169 -21.76643 -20.96252 -18.58734 -18.18000 -17.46222 -17.45277 -16.69609 -16.01530 -15.76973 -15.05620 -14.81128 -14.41359 -14.16400 -13.85958 -13.69546 -13.48979 -13.36003 -13.20304 -13.08816 -12.87109 -12.77152 -12.57579 -12.38866 -12.18716 -12.04867 -11.64372 -11.45485 -11.14092 -10.84949 -10.58614 -10.34567 -9.38686 -8.20044 -6.28411 1.39415 1.40626 1.51798 2.41284 2.60321 3.04720 3.14944 3.21873 3.77469 3.82132 3.88512 4.05256 4.16553 4.17992 4.28869 4.37181 4.41965 4.56034 4.63015 4.74270 4.79281 4.83151 4.90207 4.96457 5.03034 5.13984 5.15500 5.24654 5.35230 5.36213 5.60491 5.76739 5.92972 6.20607 6.33490 6.44135 6.83101 7.38763 8.91930 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032418 B = 0.006415 C = 0.005859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.517146 B = 4363.581137 C = 4777.465109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.254 3.746 3 C 0.067 3.933 4 H 0.063 0.937 5 C -0.109 4.109 6 C -0.124 4.124 7 C 0.038 3.962 8 N -0.677 5.677 9 O -0.367 6.367 10 C 0.026 3.974 11 C 0.079 3.921 12 H 0.066 0.934 13 C 0.029 3.971 14 C -0.527 4.527 15 H 0.053 0.947 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.962 3.038 19 H -0.276 1.276 20 H -0.279 1.279 21 H -0.266 1.266 22 O -0.386 6.386 23 H 0.094 0.906 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.336 0.664 33 H 0.119 0.881 34 H 0.068 0.932 35 H -0.002 1.002 36 H 0.018 0.982 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.199 14.822 -9.967 17.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.177 3.823 3 C -0.043 4.043 4 H 0.081 0.919 5 C -0.147 4.147 6 C -0.162 4.162 7 C -0.091 4.091 8 N -0.306 5.306 9 O -0.288 6.288 10 C -0.051 4.051 11 C 0.022 3.978 12 H 0.084 0.916 13 C -0.008 4.008 14 C -0.565 4.565 15 H 0.071 0.929 16 C -0.196 4.196 17 N -0.573 5.573 18 Si 0.787 3.213 19 H -0.201 1.201 20 H -0.204 1.204 21 H -0.190 1.190 22 O -0.308 6.308 23 H 0.113 0.887 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.151 0.849 33 H 0.136 0.864 34 H 0.086 0.914 35 H 0.016 0.984 36 H 0.037 0.963 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.124 14.437 -10.512 17.894 hybrid contribution 0.045 0.006 1.875 1.875 sum -1.078 14.443 -8.638 16.864 Atomic orbital electron populations 1.22370 0.93277 1.02979 1.03895 1.23455 0.92795 0.90777 0.75305 1.22910 0.89450 0.92827 0.99148 0.91944 1.22438 0.99679 0.97100 0.95458 1.22395 0.94770 0.98235 1.00778 1.22716 0.99337 0.88870 0.98148 1.62843 1.08170 1.31791 1.27788 1.89124 1.86311 1.21602 1.31731 1.24395 1.01279 0.84673 0.94712 1.23620 0.94860 0.86618 0.92735 0.91590 1.19100 0.95822 0.91556 0.94331 1.21428 1.37773 1.00803 0.96459 0.92866 1.25877 0.95643 0.94825 1.03216 1.70066 1.45036 1.06791 1.35397 0.85486 0.78816 0.77690 0.79284 1.20143 1.20438 1.19003 1.88915 1.69973 1.42172 1.29734 0.88686 0.92937 0.90666 0.91067 0.89195 0.89870 0.90030 0.93444 0.90508 0.84883 0.86352 0.91356 0.98381 0.96346 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.90 9.04 71.98 0.65 -4.25 16 2 C 0.25 8.67 0.89 30.60 0.03 8.70 16 3 C 0.07 1.91 2.77 45.26 0.13 2.04 16 4 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 5 C -0.11 -2.41 5.67 31.80 0.18 -2.23 16 6 C -0.12 -2.27 6.93 31.47 0.22 -2.05 16 7 C 0.04 0.84 7.52 86.45 0.65 1.49 16 8 N -0.68 -19.90 6.99 -480.34 -3.36 -23.26 16 9 O -0.37 -12.84 9.86 -126.22 -1.24 -14.09 16 10 C 0.03 0.93 7.36 72.64 0.53 1.47 16 11 C 0.08 3.46 3.61 31.25 0.11 3.57 16 12 H 0.07 2.96 8.14 -2.38 -0.02 2.94 16 13 C 0.03 1.55 4.76 29.85 0.14 1.69 16 14 C -0.53 -30.70 8.95 25.60 0.23 -30.47 16 15 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 16 C 0.00 0.11 5.46 84.65 0.46 0.58 16 17 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 18 Si 0.96 45.28 29.54 68.60 2.03 47.31 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 22 O -0.39 -16.74 10.29 -126.22 -1.30 -18.04 16 23 H 0.09 2.22 7.48 -2.38 -0.02 2.20 16 24 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 25 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.07 1.80 7.17 -2.39 -0.02 1.78 16 27 H 0.09 1.59 8.07 -2.38 -0.02 1.57 16 28 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.34 10.47 8.92 -89.70 -0.80 9.67 16 33 H 0.12 3.74 8.14 -2.39 -0.02 3.72 16 34 H 0.07 2.45 8.05 -2.39 -0.02 2.43 16 35 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 36 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -66.33 299.54 -0.01 -66.34 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.24 Total: 17.76 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 3.33 Total: -19.47 kcal Atomic # 7 Polarization: -76.73 SS G_CDS: -3.07 Total: -79.80 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -2.54 Total: -32.13 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -66.33 -0.01 -66.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260482933.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.271 kcal (2) G-P(sol) polarization free energy of solvation -66.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds