Wall clock time and date at job start Mon Mar 30 2020 03:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.62451 * 2 1 4 4 H 1.08995 * 110.59231 * 56.49624 * 3 2 1 5 5 C 1.54941 * 110.66643 * 179.49707 * 3 2 1 6 6 C 1.54587 * 102.91912 * 155.85183 * 5 3 2 7 7 C 1.53997 * 105.14440 * 338.04212 * 6 5 3 8 8 N 1.47901 * 107.05358 * 358.77497 * 7 6 5 9 9 O 1.43365 * 109.63114 * 239.61184 * 2 1 3 10 10 C 1.44194 * 107.29023 * 240.78859 * 9 2 1 11 11 C 1.54919 * 103.07604 * 21.43224 * 10 9 2 12 12 H 1.09002 * 110.97389 * 82.54559 * 11 10 9 13 13 C 1.52997 * 110.98052 * 206.29563 * 11 10 9 14 14 C 1.50700 * 109.47031 * 185.00043 * 13 11 10 15 15 H 1.08000 * 119.99774 * 0.02562 * 14 13 11 16 16 C 1.37877 * 119.99613 * 179.97438 * 14 13 11 17 17 N 1.31510 * 120.00495 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99520 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47171 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46832 * 120.00499 * 18 16 14 21 21 H 1.48501 * 109.47284 * 240.00115 * 18 16 14 22 22 O 1.43746 * 109.63135 * 120.39466 * 2 1 3 23 23 H 1.08999 * 109.47388 * 56.02269 * 1 2 3 24 24 H 1.09003 * 109.47252 * 176.02336 * 1 2 3 25 25 H 1.08999 * 109.47515 * 296.02348 * 1 2 3 26 26 H 1.08999 * 110.72359 * 274.20992 * 5 3 2 27 27 H 1.08996 * 110.72219 * 37.49077 * 5 3 2 28 28 H 1.08999 * 110.31360 * 96.96258 * 6 5 3 29 29 H 1.09007 * 110.31161 * 219.02533 * 6 5 3 30 30 H 1.08996 * 109.91741 * 118.13033 * 7 6 5 31 31 H 1.08999 * 109.91793 * 239.42631 * 7 6 5 32 32 H 1.00896 * 111.00354 * 264.81335 * 8 7 6 33 33 H 1.08990 * 110.69757 * 139.83260 * 10 9 2 34 34 H 1.09007 * 110.69379 * 262.87236 * 10 9 2 35 35 H 1.08999 * 109.46930 * 305.00569 * 13 11 10 36 36 H 1.09005 * 109.46989 * 65.00372 * 13 11 10 37 37 H 0.96998 * 120.00194 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4412 0.0000 4 1 1.6421 1.9914 0.8508 5 6 3.5930 1.4693 0.0127 6 6 3.9186 2.8485 -0.6051 7 6 2.6641 3.2349 -1.4103 8 7 1.7021 2.1196 -1.2763 9 8 2.0117 -0.6831 -1.1648 10 6 2.7885 -1.8097 -0.7104 11 6 2.2653 -2.0381 0.7298 12 1 1.3458 -2.6234 0.7226 13 6 3.3308 -2.7078 1.5999 14 6 2.7479 -3.0249 2.9529 15 1 1.7201 -2.7743 3.1702 16 6 3.5264 -3.6360 3.9128 17 7 4.7778 -3.9416 3.6480 18 14 2.8036 -4.0298 5.5897 19 1 1.3863 -3.5887 5.6339 20 1 2.8735 -5.4940 5.8274 21 1 3.5763 -3.3204 6.6409 22 8 2.0129 -0.6850 1.1678 23 1 -0.3634 0.5743 -0.8522 24 1 -0.3634 -1.0252 -0.0713 25 1 -0.3634 0.4509 0.9234 26 1 3.9715 1.4045 1.0328 27 1 3.9984 0.6658 -0.6020 28 1 4.1043 3.5808 0.1807 29 1 4.7842 2.7733 -1.2633 30 1 2.2308 4.1498 -1.0063 31 1 2.9251 3.3762 -2.4592 32 1 1.7759 1.4828 -2.0554 33 1 2.5989 -2.6843 -1.3324 34 1 3.8512 -1.5669 -0.7029 35 1 3.6633 -3.6294 1.1223 36 1 4.1791 -2.0336 1.7187 37 1 5.3256 -4.3711 4.3235 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260482935.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:58 Heat of formation + Delta-G solvation = -99.067337 kcal Electronic energy + Delta-G solvation = -18435.196238 eV Core-core repulsion = 15597.960436 eV Total energy + Delta-G solvation = -2837.235802 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.41265 -37.88319 -34.60345 -33.40206 -31.95249 -29.97295 -29.34629 -27.95342 -26.51819 -23.28494 -22.65487 -20.83294 -20.47485 -20.09546 -17.17992 -16.53296 -16.08258 -15.42317 -15.17546 -14.64149 -14.19948 -14.01140 -13.66908 -13.42845 -12.92190 -12.64849 -12.28563 -12.09841 -11.82154 -11.76039 -11.36274 -11.33526 -11.20294 -11.17465 -10.96580 -10.61801 -10.51023 -10.43944 -9.72356 -9.45168 -9.16726 -8.99435 -8.58494 -8.43275 -6.05679 -4.07091 3.29901 3.37481 3.42717 3.77526 4.17413 4.42851 4.56317 4.84409 4.92027 5.07155 5.23498 5.28340 5.31960 5.38619 5.51714 5.60878 5.63898 5.75898 5.86000 5.88431 5.93118 5.99024 6.11425 6.22718 6.25661 6.34313 6.38754 6.46697 6.70626 6.80473 7.34184 7.44440 7.54006 7.81167 7.91247 8.30761 8.96997 9.56644 11.05889 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033701 B = 0.006142 C = 0.005959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.629173 B = 4557.507442 C = 4697.621067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.253 3.747 3 C 0.075 3.925 4 H 0.099 0.901 5 C -0.145 4.145 6 C -0.152 4.152 7 C 0.043 3.957 8 N -0.663 5.663 9 O -0.390 6.390 10 C 0.021 3.979 11 C 0.062 3.938 12 H 0.071 0.929 13 C 0.029 3.971 14 C -0.513 4.513 15 H 0.059 0.941 16 C 0.057 3.943 17 N -0.897 5.897 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 O -0.351 6.351 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.344 0.656 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.035 0.965 36 H 0.029 0.971 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.850 9.956 -9.813 14.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.175 3.825 3 C -0.035 4.035 4 H 0.116 0.884 5 C -0.184 4.184 6 C -0.191 4.191 7 C -0.087 4.087 8 N -0.293 5.293 9 O -0.312 6.312 10 C -0.055 4.055 11 C 0.005 3.995 12 H 0.089 0.911 13 C -0.008 4.008 14 C -0.551 4.551 15 H 0.077 0.923 16 C -0.144 4.144 17 N -0.537 5.537 18 Si 0.722 3.278 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 O -0.271 6.271 23 H 0.093 0.907 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.161 0.839 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.047 0.953 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.303 10.416 -9.491 14.734 hybrid contribution 0.652 -0.871 0.777 1.337 sum -3.651 9.546 -8.715 13.431 Atomic orbital electron populations 1.22274 0.94022 1.02650 1.03058 1.23221 0.92790 0.90040 0.76477 1.22911 0.94097 0.92459 0.94026 0.88351 1.23016 0.96450 0.96647 1.02301 1.22797 0.98717 0.97672 0.99920 1.22715 0.90732 0.95667 0.99543 1.62806 1.49862 1.12008 1.04597 1.88695 1.69666 1.42596 1.30203 1.24381 0.96107 0.88490 0.96563 1.24193 1.00249 0.83230 0.91819 0.91114 1.19170 0.92412 0.95167 0.94087 1.21141 0.98094 1.38447 0.97424 0.92306 1.24992 0.94838 0.95740 0.98849 1.69954 1.06887 1.42273 1.34539 0.86491 0.79376 0.77878 0.84030 1.19662 1.21020 1.20969 1.89296 1.85381 1.22800 1.29645 0.90693 0.92229 0.91041 0.90248 0.91086 0.91413 0.91694 0.90828 0.91859 0.83866 0.89070 0.91052 0.94691 0.95268 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.15 37.16 0.34 -2.14 16 2 C 0.25 4.29 0.84 -26.73 -0.02 4.27 16 3 C 0.08 1.14 2.86 -65.78 -0.19 0.96 16 4 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 5 C -0.15 -2.18 6.15 -24.87 -0.15 -2.33 16 6 C -0.15 -1.81 6.93 -25.38 -0.18 -1.99 16 7 C 0.04 0.49 7.52 -2.75 -0.02 0.47 16 8 N -0.66 -8.83 6.88 -103.18 -0.71 -9.54 16 9 O -0.39 -6.55 9.18 -59.05 -0.54 -7.09 16 10 C 0.02 0.36 7.20 38.17 0.27 0.63 16 11 C 0.06 1.29 3.37 -25.72 -0.09 1.20 16 12 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 13 C 0.03 0.72 4.75 -27.88 -0.13 0.58 16 14 C -0.51 -14.39 9.07 -34.44 -0.31 -14.70 16 15 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 18 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 O -0.35 -7.35 10.33 -59.05 -0.61 -7.96 16 23 H 0.07 1.04 7.78 -51.93 -0.40 0.64 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.07 1.14 6.63 -51.93 -0.34 0.80 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.34 4.65 7.75 -39.29 -0.30 4.35 16 33 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.07 1.23 7.55 -51.92 -0.39 0.84 16 35 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 297.28 15.07 4.48 4.48 Total: -1.00 -29.44 297.28 -8.30 -37.74 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.06 Total: 3.03 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -0.57 Total: -11.53 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.03 Total: -35.33 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -1.15 Total: -15.05 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.44 -8.30 -37.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260482935.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.328 kcal (2) G-P(sol) polarization free energy of solvation -29.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds