Wall clock time and date at job start Mon Mar 30 2020 03:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.62451 * 2 1 4 4 H 1.08995 * 110.59231 * 56.49624 * 3 2 1 5 5 C 1.54941 * 110.66643 * 179.49707 * 3 2 1 6 6 C 1.54587 * 102.91912 * 155.85183 * 5 3 2 7 7 C 1.53997 * 105.14440 * 338.04212 * 6 5 3 8 8 N 1.47901 * 107.05358 * 358.77497 * 7 6 5 9 9 O 1.43365 * 109.63114 * 239.61184 * 2 1 3 10 10 C 1.44194 * 107.29023 * 240.78859 * 9 2 1 11 11 C 1.54919 * 103.07604 * 21.43224 * 10 9 2 12 12 H 1.09002 * 110.97389 * 82.54559 * 11 10 9 13 13 C 1.52997 * 110.98052 * 206.29563 * 11 10 9 14 14 C 1.50700 * 109.47031 * 185.00043 * 13 11 10 15 15 H 1.08000 * 119.99774 * 0.02562 * 14 13 11 16 16 C 1.37877 * 119.99613 * 179.97438 * 14 13 11 17 17 N 1.31510 * 120.00495 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99520 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47171 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46832 * 120.00499 * 18 16 14 21 21 H 1.48501 * 109.47284 * 240.00115 * 18 16 14 22 22 O 1.43746 * 109.63135 * 120.39466 * 2 1 3 23 23 H 1.08999 * 109.47388 * 56.02269 * 1 2 3 24 24 H 1.09003 * 109.47252 * 176.02336 * 1 2 3 25 25 H 1.08999 * 109.47515 * 296.02348 * 1 2 3 26 26 H 1.08999 * 110.72359 * 274.20992 * 5 3 2 27 27 H 1.08996 * 110.72219 * 37.49077 * 5 3 2 28 28 H 1.08999 * 110.31360 * 96.96258 * 6 5 3 29 29 H 1.09007 * 110.31161 * 219.02533 * 6 5 3 30 30 H 1.08996 * 109.91741 * 118.13033 * 7 6 5 31 31 H 1.08999 * 109.91793 * 239.42631 * 7 6 5 32 32 H 1.00896 * 111.00354 * 264.81335 * 8 7 6 33 33 H 1.08990 * 110.69757 * 139.83260 * 10 9 2 34 34 H 1.09007 * 110.69379 * 262.87236 * 10 9 2 35 35 H 1.08999 * 109.46930 * 305.00569 * 13 11 10 36 36 H 1.09005 * 109.46989 * 65.00372 * 13 11 10 37 37 H 0.96998 * 120.00194 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4412 0.0000 4 1 1.6421 1.9914 0.8508 5 6 3.5930 1.4693 0.0127 6 6 3.9186 2.8485 -0.6051 7 6 2.6641 3.2349 -1.4103 8 7 1.7021 2.1196 -1.2763 9 8 2.0117 -0.6831 -1.1648 10 6 2.7885 -1.8097 -0.7104 11 6 2.2653 -2.0381 0.7298 12 1 1.3458 -2.6234 0.7226 13 6 3.3308 -2.7078 1.5999 14 6 2.7479 -3.0249 2.9529 15 1 1.7201 -2.7743 3.1702 16 6 3.5264 -3.6360 3.9128 17 7 4.7778 -3.9416 3.6480 18 14 2.8036 -4.0298 5.5897 19 1 1.3863 -3.5887 5.6339 20 1 2.8735 -5.4940 5.8274 21 1 3.5763 -3.3204 6.6409 22 8 2.0129 -0.6850 1.1678 23 1 -0.3634 0.5743 -0.8522 24 1 -0.3634 -1.0252 -0.0713 25 1 -0.3634 0.4509 0.9234 26 1 3.9715 1.4045 1.0328 27 1 3.9984 0.6658 -0.6020 28 1 4.1043 3.5808 0.1807 29 1 4.7842 2.7733 -1.2633 30 1 2.2308 4.1498 -1.0063 31 1 2.9251 3.3762 -2.4592 32 1 1.7759 1.4828 -2.0554 33 1 2.5989 -2.6843 -1.3324 34 1 3.8512 -1.5669 -0.7029 35 1 3.6633 -3.6294 1.1223 36 1 4.1791 -2.0336 1.7187 37 1 5.3256 -4.3711 4.3235 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260482935.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:57 Heat of formation + Delta-G solvation = -118.960018 kcal Electronic energy + Delta-G solvation = -18436.058850 eV Core-core repulsion = 15597.960436 eV Total energy + Delta-G solvation = -2838.098414 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.81710 -39.04996 -36.16822 -35.30615 -33.55868 -31.43128 -30.65056 -29.07229 -28.28862 -25.16681 -23.86080 -22.45271 -21.58646 -21.40940 -18.80484 -18.25477 -17.67777 -16.75910 -16.59202 -16.28800 -15.68175 -15.33563 -14.87885 -14.69789 -14.34786 -14.17951 -13.88035 -13.67332 -13.35382 -13.10939 -13.07997 -12.93435 -12.53832 -12.49114 -12.34775 -12.32029 -12.10558 -11.65569 -11.49277 -11.19496 -10.94839 -10.62540 -10.45830 -9.64519 -8.23579 -6.32724 1.38334 1.39450 1.52494 2.38692 2.39606 2.87294 3.11250 3.37437 3.63364 3.74604 3.83913 3.91784 4.03106 4.14511 4.26793 4.33403 4.47739 4.53977 4.55637 4.67766 4.73180 4.80565 4.90028 4.99244 5.05421 5.06294 5.09901 5.20637 5.26364 5.32458 5.51717 5.72741 5.74070 6.14246 6.23809 6.42999 6.78837 7.35314 8.88425 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033701 B = 0.006142 C = 0.005959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.629173 B = 4557.507442 C = 4697.621067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.246 3.754 3 C 0.077 3.923 4 H 0.094 0.906 5 C -0.148 4.148 6 C -0.145 4.145 7 C 0.044 3.956 8 N -0.660 5.660 9 O -0.383 6.383 10 C 0.031 3.969 11 C 0.066 3.934 12 H 0.073 0.927 13 C 0.035 3.965 14 C -0.533 4.533 15 H 0.054 0.946 16 C 0.004 3.996 17 N -0.931 5.931 18 Si 0.962 3.038 19 H -0.266 1.266 20 H -0.274 1.274 21 H -0.279 1.279 22 O -0.379 6.379 23 H 0.091 0.909 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.344 0.656 33 H 0.118 0.882 34 H 0.068 0.932 35 H 0.024 0.976 36 H 0.000 1.000 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.810 10.824 -10.437 15.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.169 3.831 3 C -0.033 4.033 4 H 0.112 0.888 5 C -0.188 4.188 6 C -0.184 4.184 7 C -0.085 4.085 8 N -0.289 5.289 9 O -0.305 6.305 10 C -0.045 4.045 11 C 0.009 3.991 12 H 0.091 0.909 13 C -0.002 4.002 14 C -0.571 4.571 15 H 0.072 0.928 16 C -0.194 4.194 17 N -0.571 5.571 18 Si 0.787 3.213 19 H -0.190 1.190 20 H -0.199 1.199 21 H -0.205 1.205 22 O -0.299 6.299 23 H 0.110 0.890 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.161 0.839 33 H 0.136 0.864 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.018 0.982 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.272 11.296 -10.132 16.064 hybrid contribution 0.972 -1.105 0.950 1.751 sum -4.300 10.191 -9.182 14.376 Atomic orbital electron populations 1.22252 0.92548 1.02840 1.03902 1.23517 0.93861 0.90487 0.75244 1.22833 0.93981 0.91469 0.95051 0.88759 1.22987 0.96484 0.98309 1.00993 1.22771 0.99607 0.95698 1.00308 1.22818 0.89826 0.95103 1.00797 1.62826 1.50524 1.12061 1.03532 1.88690 1.69604 1.42323 1.29864 1.24290 0.95889 0.89615 0.94742 1.23918 0.98963 0.83322 0.92941 0.90926 1.18967 0.92713 0.94426 0.94086 1.21486 0.98055 1.38549 0.98962 0.92776 1.25868 0.95190 0.95509 1.02832 1.70062 1.08138 1.42941 1.35966 0.85436 0.78725 0.78054 0.79082 1.19039 1.19934 1.20512 1.89255 1.85919 1.22847 1.31917 0.89016 0.92500 0.90851 0.92498 0.92472 0.90596 0.90552 0.89747 0.89791 0.83887 0.86378 0.91396 0.95753 0.98201 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.60 9.15 71.98 0.66 -3.94 16 2 C 0.25 8.19 0.84 30.60 0.03 8.21 16 3 C 0.08 2.28 2.86 45.26 0.13 2.41 16 4 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 5 C -0.15 -4.43 6.15 31.80 0.20 -4.23 16 6 C -0.14 -3.19 6.93 31.47 0.22 -2.98 16 7 C 0.04 0.87 7.52 86.45 0.65 1.52 16 8 N -0.66 -16.14 6.88 -480.35 -3.30 -19.44 16 9 O -0.38 -12.39 9.18 -126.20 -1.16 -13.55 16 10 C 0.03 1.05 7.20 72.64 0.52 1.57 16 11 C 0.07 2.75 3.37 31.25 0.11 2.86 16 12 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 13 C 0.04 1.82 4.75 29.85 0.14 1.96 16 14 C -0.53 -30.44 9.07 25.60 0.23 -30.21 16 15 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 16 C 0.00 0.23 5.46 84.66 0.46 0.69 16 17 N -0.93 -55.91 13.29 21.45 0.28 -55.63 16 18 Si 0.96 44.63 29.54 68.60 2.03 46.66 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 O -0.38 -16.04 10.33 -126.20 -1.30 -17.35 16 23 H 0.09 2.35 7.78 -2.39 -0.02 2.33 16 24 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.06 1.84 6.63 -2.39 -0.02 1.82 16 28 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.34 8.49 7.75 -89.70 -0.70 7.80 16 33 H 0.12 3.38 8.14 -2.39 -0.02 3.36 16 34 H 0.07 2.36 7.55 -2.38 -0.02 2.34 16 35 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 37 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -63.06 297.28 0.23 -62.83 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.35 Total: 18.62 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: 3.34 Total: -22.14 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -3.02 Total: -75.07 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -2.46 Total: -30.89 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -63.06 0.23 -62.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260482935.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.134 kcal (2) G-P(sol) polarization free energy of solvation -63.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds