Wall clock time and date at job start Mon Mar 30 2020 03:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 H 1.09007 * 110.28028 * 305.69843 * 10 9 7 12 12 C 1.54450 * 110.32249 * 183.58416 * 10 9 7 13 13 O 1.45005 * 102.81789 * 219.36462 * 12 10 9 14 14 C 1.44387 * 103.29325 * 36.49620 * 13 12 10 15 15 H 1.09004 * 110.16628 * 80.04529 * 14 13 12 16 16 C 1.53006 * 110.11264 * 201.65743 * 14 13 12 17 17 C 1.53122 * 109.52018 * 56.62032 * 16 14 13 18 18 C 1.53043 * 109.27422 * 182.50427 * 17 16 14 19 19 N 1.46846 * 109.57541 * 59.08098 * 18 17 16 20 20 C 1.46844 * 111.19999 * 298.28970 * 19 18 17 21 21 C 1.53043 * 109.52519 * 61.74259 * 20 19 18 22 22 O 1.43776 * 106.17433 * 320.83568 * 14 13 12 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 25 25 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 26 26 H 1.09003 * 110.72448 * 337.64694 * 12 10 9 27 27 H 1.08996 * 110.73209 * 100.94776 * 12 10 9 28 28 H 1.08995 * 109.52108 * 176.74201 * 16 14 13 29 29 H 1.08998 * 109.50005 * 302.37767 * 17 16 14 30 30 H 1.08994 * 109.50486 * 62.49413 * 17 16 14 31 31 H 1.09000 * 109.41137 * 299.06445 * 18 17 16 32 32 H 1.09002 * 109.45190 * 179.12581 * 18 17 16 33 33 H 1.00894 * 111.00304 * 62.39006 * 19 18 17 34 34 H 1.09003 * 109.46485 * 301.73087 * 20 19 18 35 35 H 1.09001 * 109.45635 * 181.75500 * 20 19 18 36 36 H 1.08994 * 109.50453 * 180.88203 * 21 20 19 37 37 H 1.09001 * 109.52870 * 60.77953 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 1 3.5847 -3.1926 0.8282 12 6 5.5632 -2.6606 0.0897 13 8 5.9220 -3.7386 -0.8112 14 6 4.9572 -3.6144 -1.8783 15 1 5.2575 -2.8241 -2.5663 16 6 4.8275 -4.9422 -2.6274 17 6 4.4473 -6.0507 -1.6419 18 6 4.3803 -7.3867 -2.3855 19 7 5.6836 -7.6751 -2.9974 20 6 6.0465 -6.6485 -3.9826 21 6 6.1649 -5.2907 -3.2865 22 8 3.7082 -3.2762 -1.2516 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6797 -0.8895 25 1 3.8746 -0.6808 0.8905 26 1 5.9846 -1.7155 -0.2529 27 1 5.8862 -2.8820 1.1069 28 1 4.0562 -4.8549 -3.3926 29 1 5.1986 -6.1109 -0.8545 30 1 3.4752 -5.8288 -1.2018 31 1 3.6184 -7.3307 -3.1630 32 1 4.1250 -8.1805 -1.6834 33 1 6.4004 -7.7704 -2.2938 34 1 5.2768 -6.5958 -4.7527 35 1 7.0014 -6.9063 -4.4406 36 1 6.4190 -4.5262 -4.0207 37 1 6.9441 -5.3380 -2.5257 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260495482.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:31 Heat of formation + Delta-G solvation = -105.305425 kcal Electronic energy + Delta-G solvation = -18121.287810 eV Core-core repulsion = 15283.781504 eV Total energy + Delta-G solvation = -2837.506306 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.22054 -38.34250 -34.64579 -33.38028 -32.42142 -30.88078 -30.58219 -27.24467 -25.25078 -23.05394 -22.84467 -22.01027 -20.43524 -19.99826 -16.91913 -16.73887 -16.19986 -15.95840 -15.11273 -14.68952 -14.58966 -14.24876 -13.96460 -13.39489 -13.31896 -12.89715 -12.48497 -12.33465 -12.15396 -11.86767 -11.73251 -11.61135 -11.34323 -11.19363 -10.61009 -10.54864 -10.41944 -10.24267 -9.80259 -9.69105 -9.32672 -8.93439 -8.57596 -8.41800 -6.05797 -4.03593 3.25960 3.34297 3.35723 3.95030 4.14906 4.32520 4.41227 4.74104 4.87745 5.02238 5.11747 5.14898 5.26808 5.29917 5.39606 5.43247 5.49594 5.53253 5.66775 5.76915 5.82033 5.92568 5.94328 6.04544 6.11784 6.24078 6.29822 6.43105 6.58317 6.87083 6.94633 7.17056 7.28547 7.56738 7.74238 8.51156 9.01125 9.54793 11.07785 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.041693 B = 0.005537 C = 0.005286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.414345 B = 5056.107905 C = 5295.880874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.066 3.934 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.268 1.268 6 H -0.286 1.286 7 C -0.511 4.511 8 H 0.075 0.925 9 C -0.023 4.023 10 C 0.071 3.929 11 H 0.085 0.915 12 C 0.014 3.986 13 O -0.384 6.384 14 C 0.230 3.770 15 H 0.064 0.936 16 C -0.083 4.083 17 C -0.145 4.145 18 C 0.056 3.944 19 N -0.688 5.688 20 C 0.058 3.942 21 C -0.149 4.149 22 O -0.360 6.360 23 H 0.263 0.737 24 H 0.022 0.978 25 H 0.025 0.975 26 H 0.070 0.930 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.339 0.661 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.418 -10.361 -4.426 17.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.192 1.192 6 H -0.212 1.212 7 C -0.549 4.549 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.013 3.987 11 H 0.103 0.897 12 C -0.062 4.062 13 O -0.304 6.304 14 C 0.134 3.866 15 H 0.082 0.918 16 C -0.101 4.101 17 C -0.184 4.184 18 C -0.074 4.074 19 N -0.316 5.316 20 C -0.071 4.071 21 C -0.189 4.189 22 O -0.280 6.280 23 H 0.073 0.927 24 H 0.040 0.960 25 H 0.043 0.957 26 H 0.088 0.912 27 H 0.118 0.882 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.156 0.844 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.956 -10.892 -4.978 17.643 hybrid contribution 0.590 2.141 0.680 2.322 sum 13.546 -8.751 -4.298 16.689 Atomic orbital electron populations 1.69909 1.06233 1.26816 1.51071 1.25014 0.94748 0.98973 0.94726 0.86824 0.80315 0.83917 0.78460 1.20228 1.19249 1.21235 1.20971 0.88717 0.94709 1.50472 0.90640 1.19935 0.98685 0.90410 0.96959 1.23557 0.91763 0.96915 0.86425 0.89694 1.24471 0.95933 0.90662 0.95177 1.89333 1.53767 1.52086 1.35239 1.24240 0.77705 0.95604 0.89017 0.91848 1.21324 0.98012 0.93251 0.97554 1.22143 1.03276 0.94756 0.98245 1.22052 0.91627 0.95698 0.98011 1.60709 1.05010 1.46409 1.19488 1.22001 1.01345 0.88736 0.95049 1.22227 0.97229 0.98985 1.00419 1.89019 1.26451 1.78479 1.34097 0.92712 0.95986 0.95665 0.91211 0.88239 0.89534 0.91437 0.90418 0.90984 0.90777 0.84363 0.90953 0.90820 0.91501 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 7 C -0.51 -14.66 9.52 -34.44 -0.33 -14.98 16 8 H 0.08 2.38 7.99 -52.49 -0.42 1.96 16 9 C -0.02 -0.53 3.66 -27.88 -0.10 -0.63 16 10 C 0.07 1.42 3.66 -25.97 -0.10 1.33 16 11 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 12 C 0.01 0.23 7.38 37.92 0.28 0.51 16 13 O -0.38 -6.28 10.18 -59.28 -0.60 -6.88 16 14 C 0.23 3.86 3.53 37.16 0.13 4.00 16 15 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 16 C -0.08 -1.15 2.39 -90.49 -0.22 -1.37 16 17 C -0.15 -1.95 5.06 -26.65 -0.13 -2.08 16 18 C 0.06 0.63 6.55 -3.83 -0.03 0.60 16 19 N -0.69 -7.30 6.87 -113.81 -0.78 -8.08 16 20 C 0.06 0.59 6.55 -3.83 -0.03 0.56 16 21 C -0.15 -1.69 5.28 -26.65 -0.14 -1.83 16 22 O -0.36 -7.53 10.22 -59.28 -0.61 -8.13 16 23 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 24 H 0.02 0.53 7.20 -51.93 -0.37 0.15 16 25 H 0.03 0.56 7.57 -51.93 -0.39 0.17 16 26 H 0.07 1.08 7.86 -51.93 -0.41 0.67 16 27 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.07 0.94 7.56 -51.93 -0.39 0.55 16 30 H 0.08 1.19 7.80 -51.93 -0.40 0.79 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.34 3.32 8.86 -39.29 -0.35 2.97 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.84 7.74 -51.93 -0.40 0.44 16 LS Contribution 292.67 15.07 4.41 4.41 Total: -1.00 -31.22 292.67 -8.34 -39.56 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.11 Total: 1.53 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -0.75 Total: -12.06 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: -0.01 Total: -35.27 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -1.21 Total: -15.02 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.22 -8.34 -39.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260495482.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.747 kcal (2) G-P(sol) polarization free energy of solvation -31.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds