Wall clock time and date at job start Mon Mar 30 2020 03:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 H 1.09007 * 110.28028 * 305.69843 * 10 9 7 12 12 C 1.54450 * 110.32249 * 183.58416 * 10 9 7 13 13 O 1.45005 * 102.81789 * 219.36462 * 12 10 9 14 14 C 1.44387 * 103.29325 * 36.49620 * 13 12 10 15 15 H 1.09004 * 110.16628 * 80.04529 * 14 13 12 16 16 C 1.53006 * 110.11264 * 201.65743 * 14 13 12 17 17 C 1.53122 * 109.52018 * 56.62032 * 16 14 13 18 18 C 1.53043 * 109.27422 * 182.50427 * 17 16 14 19 19 N 1.46846 * 109.57541 * 59.08098 * 18 17 16 20 20 C 1.46844 * 111.19999 * 298.28970 * 19 18 17 21 21 C 1.53043 * 109.52519 * 61.74259 * 20 19 18 22 22 O 1.43776 * 106.17433 * 320.83568 * 14 13 12 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 25 25 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 26 26 H 1.09003 * 110.72448 * 337.64694 * 12 10 9 27 27 H 1.08996 * 110.73209 * 100.94776 * 12 10 9 28 28 H 1.08995 * 109.52108 * 176.74201 * 16 14 13 29 29 H 1.08998 * 109.50005 * 302.37767 * 17 16 14 30 30 H 1.08994 * 109.50486 * 62.49413 * 17 16 14 31 31 H 1.09000 * 109.41137 * 299.06445 * 18 17 16 32 32 H 1.09002 * 109.45190 * 179.12581 * 18 17 16 33 33 H 1.00894 * 111.00304 * 62.39006 * 19 18 17 34 34 H 1.09003 * 109.46485 * 301.73087 * 20 19 18 35 35 H 1.09001 * 109.45635 * 181.75500 * 20 19 18 36 36 H 1.08994 * 109.50453 * 180.88203 * 21 20 19 37 37 H 1.09001 * 109.52870 * 60.77953 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 1 3.5847 -3.1926 0.8282 12 6 5.5632 -2.6606 0.0897 13 8 5.9220 -3.7386 -0.8112 14 6 4.9572 -3.6144 -1.8783 15 1 5.2575 -2.8241 -2.5663 16 6 4.8275 -4.9422 -2.6274 17 6 4.4473 -6.0507 -1.6419 18 6 4.3803 -7.3867 -2.3855 19 7 5.6836 -7.6751 -2.9974 20 6 6.0465 -6.6485 -3.9826 21 6 6.1649 -5.2907 -3.2865 22 8 3.7082 -3.2762 -1.2516 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6797 -0.8895 25 1 3.8746 -0.6808 0.8905 26 1 5.9846 -1.7155 -0.2529 27 1 5.8862 -2.8820 1.1069 28 1 4.0562 -4.8549 -3.3926 29 1 5.1986 -6.1109 -0.8545 30 1 3.4752 -5.8288 -1.2018 31 1 3.6184 -7.3307 -3.1630 32 1 4.1250 -8.1805 -1.6834 33 1 6.4004 -7.7704 -2.2938 34 1 5.2768 -6.5958 -4.7527 35 1 7.0014 -6.9063 -4.4406 36 1 6.4190 -4.5262 -4.0207 37 1 6.9441 -5.3380 -2.5257 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260495482.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:31 Heat of formation + Delta-G solvation = -128.165402 kcal Electronic energy + Delta-G solvation = -18122.279093 eV Core-core repulsion = 15283.781504 eV Total energy + Delta-G solvation = -2838.497589 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.56728 -39.38290 -36.17062 -35.18104 -33.89808 -32.31250 -31.75454 -28.92399 -26.46798 -24.78200 -23.84266 -23.11302 -22.12890 -21.07260 -18.97230 -18.18517 -17.52002 -17.15299 -16.57131 -16.27777 -15.59909 -15.43981 -15.13672 -15.05284 -14.70043 -14.33795 -14.02464 -13.67940 -13.50283 -13.30695 -13.10014 -13.04950 -12.57902 -12.37428 -12.17750 -12.01357 -11.74733 -11.59623 -11.42847 -11.28275 -11.12226 -10.80003 -10.50089 -9.32593 -8.30265 -6.34871 1.33608 1.36744 1.47576 2.34106 2.61157 2.90637 3.06558 3.41919 3.65485 3.67749 3.85391 3.89195 3.98778 4.15528 4.19696 4.36585 4.46638 4.47106 4.52630 4.60474 4.64922 4.79806 4.87046 4.91092 4.99371 5.04462 5.08530 5.15882 5.23646 5.34285 5.39554 5.58411 6.06753 6.13118 6.26382 6.49162 6.71791 7.27716 8.87284 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.041693 B = 0.005537 C = 0.005286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.414345 B = 5056.107905 C = 5295.880874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.259 1.259 5 H -0.246 1.246 6 H -0.286 1.286 7 C -0.523 4.523 8 H 0.024 0.976 9 C -0.018 4.018 10 C 0.066 3.934 11 H 0.073 0.927 12 C 0.024 3.976 13 O -0.379 6.379 14 C 0.224 3.776 15 H 0.068 0.932 16 C -0.083 4.083 17 C -0.138 4.138 18 C 0.063 3.937 19 N -0.687 5.687 20 C 0.061 3.939 21 C -0.139 4.139 22 O -0.393 6.393 23 H 0.266 0.734 24 H 0.023 0.977 25 H 0.047 0.953 26 H 0.085 0.915 27 H 0.130 0.870 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.346 0.654 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.386 -9.931 -4.759 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.778 3.222 4 H -0.184 1.184 5 H -0.170 1.170 6 H -0.211 1.211 7 C -0.561 4.561 8 H 0.042 0.958 9 C -0.056 4.056 10 C 0.008 3.992 11 H 0.091 0.909 12 C -0.052 4.052 13 O -0.300 6.300 14 C 0.129 3.871 15 H 0.085 0.915 16 C -0.102 4.102 17 C -0.177 4.177 18 C -0.067 4.067 19 N -0.316 5.316 20 C -0.069 4.069 21 C -0.178 4.178 22 O -0.315 6.315 23 H 0.075 0.925 24 H 0.041 0.959 25 H 0.065 0.935 26 H 0.103 0.897 27 H 0.148 0.852 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.164 0.836 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.953 -10.488 -5.308 19.816 hybrid contribution -0.414 1.922 0.774 2.113 sum 15.539 -8.565 -4.534 18.313 Atomic orbital electron populations 1.70087 1.08489 1.28183 1.52676 1.26080 0.95680 1.03679 0.94103 0.85598 0.79343 0.77788 0.79516 1.18409 1.16951 1.21147 1.21261 0.91693 0.92913 1.50262 0.95783 1.19870 0.94975 0.93093 0.97639 1.23465 0.94894 0.94680 0.86134 0.90854 1.24484 0.92387 0.91440 0.96889 1.89332 1.53246 1.52304 1.35086 1.24496 0.76455 0.97171 0.89007 0.91495 1.21374 0.99584 0.92005 0.97244 1.22063 1.01428 0.96013 0.98216 1.21978 0.92236 0.94602 0.97884 1.60718 1.04759 1.46419 1.19673 1.22052 1.02437 0.87681 0.94698 1.22171 0.95135 1.00116 1.00384 1.89000 1.29160 1.78669 1.34643 0.92493 0.95912 0.93539 0.89734 0.85209 0.90297 0.91842 0.93290 0.91315 0.89802 0.83589 0.91029 0.88694 0.90519 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.04 13.96 21.45 0.30 -60.74 16 2 C 0.00 0.05 5.47 84.66 0.46 0.51 16 3 Si 0.95 43.88 27.47 68.60 1.88 45.76 16 4 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.25 -10.36 6.54 99.48 0.65 -9.71 16 6 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 7 C -0.52 -30.95 9.52 25.60 0.24 -30.70 16 8 H 0.02 1.61 7.99 -2.91 -0.02 1.58 16 9 C -0.02 -0.85 3.66 29.85 0.11 -0.74 16 10 C 0.07 2.63 3.66 31.09 0.11 2.75 16 11 H 0.07 3.05 8.14 -2.38 -0.02 3.03 16 12 C 0.02 0.72 7.38 72.47 0.53 1.26 16 13 O -0.38 -11.66 10.18 -125.98 -1.28 -12.95 16 14 C 0.22 7.36 3.53 71.98 0.25 7.61 16 15 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 16 C -0.08 -2.27 2.39 -10.71 -0.03 -2.30 16 17 C -0.14 -3.70 5.06 30.65 0.16 -3.54 16 18 C 0.06 1.36 6.55 86.33 0.57 1.93 16 19 N -0.69 -13.13 6.87 -513.99 -3.53 -16.66 16 20 C 0.06 1.07 6.55 86.33 0.57 1.64 16 21 C -0.14 -2.85 5.28 30.65 0.16 -2.69 16 22 O -0.39 -16.81 10.22 -125.98 -1.29 -18.10 16 23 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 24 H 0.02 1.05 7.20 -2.38 -0.02 1.03 16 25 H 0.05 1.96 7.57 -2.39 -0.02 1.95 16 26 H 0.08 2.31 7.86 -2.39 -0.02 2.29 16 27 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 28 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.06 1.73 7.56 -2.39 -0.02 1.72 16 30 H 0.05 1.57 7.80 -2.39 -0.02 1.56 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.35 5.94 8.86 -89.70 -0.79 5.14 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.46 7.74 -2.39 -0.02 1.44 16 Total: -1.00 -69.50 292.67 -0.58 -70.09 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.19 Total: 16.88 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 3.14 Total: -24.28 kcal Atomic # 7 Polarization: -74.17 SS G_CDS: -3.23 Total: -77.40 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -2.57 Total: -31.04 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.76 kcal Total: -69.50 -0.58 -70.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260495482.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.080 kcal (2) G-P(sol) polarization free energy of solvation -69.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds